Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 2.5e-37 158.3 80 100.0
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 2.6e-23 111.7 84 71.4
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 2.5e-21 105.1 85 69.4
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 2.1e-20 102.1 85 68.2
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 7.9e-20 100.1 84 69.0
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 1.0e-19 99.8 84 69.0
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 6.7e-19 97.1 84 66.7
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 1.1e-18 96.3 84 69.0
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.5e-18 95.9 84 64.3
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 7.4e-18 93.6 84 66.7
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 7.4e-18 93.6 84 66.7
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 9.7e-18 93.2 84 67.9
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 9.7e-18 93.2 84 67.9
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 9.7e-18 93.2 84 67.9
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 1.2e-15 86.3 83 62.7
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 3.5e-15 84.7 83 56.6
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 4.5e-15 84.3 80 57.5
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 1.3e-14 82.8 84 54.8
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.3e-14 82.8 83 57.8
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.7e-14 82.4 80 61.2
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 2.2e-14 82.0 83 57.8
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 2.9e-14 81.6 80 60.0
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 3.8e-14 81.3 83 57.8
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 5.0e-14 80.9 83 56.6
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 5.0e-14 80.9 80 58.8
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 6.5e-14 80.5 80 57.5
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 6.5e-14 80.5 83 55.4
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 6.5e-14 80.5 80 58.8
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.1e-13 79.7 83 56.6
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.1e-13 79.7 80 58.8
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.5e-13 79.3 80 57.5
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 1.5e-13 79.3 80 58.8
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 1.5e-13 79.3 78 59.0
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.5e-13 79.3 78 59.0
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 1.9e-13 79.0 83 55.4
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 2.5e-13 78.6 83 51.8
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 2.5e-13 78.6 80 56.2
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 3.2e-13 78.2 83 55.4
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 4.2e-13 77.8 80 55.0
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 4.2e-13 77.8 80 57.5
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 4.2e-13 77.8 80 56.2
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 4.2e-13 77.8 80 57.5
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 4.2e-13 77.8 80 57.5
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 4.2e-13 77.8 78 57.7
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 4.2e-13 77.8 83 54.2
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 5.5e-13 77.4 80 55.0
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 5.5e-13 77.4 80 55.0
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 5.5e-13 77.4 80 57.5
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 5.5e-13 77.4 83 51.8
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 5.5e-13 77.4 78 57.7
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 5.5e-13 77.4 78 55.1
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 7.2e-13 77.0 80 52.5
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 7.2e-13 77.0 83 54.2
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 7.2e-13 77.0 83 54.2
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 7.2e-13 77.0 80 57.5
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 1.2e-12 76.3 80 52.5
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.6e-12 75.9 80 57.5
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.1e-12 75.5 80 57.5
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 2.1e-12 75.5 81 56.8
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 2.1e-12 75.5 80 55.0
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 2.1e-12 75.5 83 55.4
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 2.7e-12 75.1 80 51.2
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 2.7e-12 75.1 83 53.0
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 2.7e-12 75.1 81 53.1
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 2.7e-12 75.1 80 53.8
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 2.7e-12 75.1 80 56.2
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 6.1e-12 73.9 83 56.6
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 8.0e-12 73.6 78 59.0
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.0e-11 73.2 81 51.9
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 1.0e-11 73.2 80 52.5
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 1.4e-11 72.8 80 55.0
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 3.0e-11 71.6 83 53.0
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 3.0e-11 71.6 80 55.0
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 4.0e-11 71.2 80 53.8
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 4.0e-11 71.2 80 53.8
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 5.2e-11 70.9 80 52.5
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 5.2e-11 70.9 83 49.4
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 6.7e-11 70.5 80 50.0
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 8.8e-11 70.1 81 50.6
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 1.1e-10 69.7 80 55.0
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 1.1e-10 69.7 83 51.8
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.1e-10 69.7 83 48.2
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.1e-10 69.7 83 48.2
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 1.5e-10 69.3 80 56.2
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.0e-10 68.9 78 53.8
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 2.6e-10 68.6 80 55.0
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 2.6e-10 68.6 83 49.4
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 3.3e-10 68.2 80 51.2
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.3e-10 68.2 81 51.9
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 4.4e-10 67.8 81 50.6
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 4.4e-10 67.8 83 48.2
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 7.5e-10 67.0 80 52.5
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 7.5e-10 67.0 84 52.4
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 7.5e-10 67.0 83 47.0
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 1.7e-09 65.9 83 47.0
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 3.7e-09 64.7 81 50.6
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 3.7e-09 64.7 80 50.0
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 6.3e-09 63.9 80 51.2
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 6.3e-09 63.9 80 51.2
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 8.2e-09 63.5 80 46.2
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 1.1e-08 63.2 80 48.8
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 1.8e-08 62.4 80 46.2
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 1.8e-08 62.4 80 46.2
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 4.1e-08 61.2 83 44.6
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 5.3e-08 60.8 80 48.8
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 5.3e-08 60.8 82 47.6
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 9.1e-08 60.1 83 49.4
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 1.6e-07 59.3 81 43.2
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 1.6e-07 59.3 80 46.2
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 2.0e-07 58.9 82 47.6
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 7.7e-07 57.0 81 40.7
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.0e-06 56.6 80 42.5
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 5.0e-06 54.3 81 44.4


User provided reference genes

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