Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 5.5e-56 220.7 109 100.0
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 5.5e-56 220.7 109 100.0
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 9.7e-53 209.9 109 93.6
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 2.1e-47 192.2 114 84.2
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 1.0e-46 189.9 105 89.5
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.5e-45 186.0 114 81.6
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.5e-45 186.0 114 81.6
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 3.3e-45 184.9 114 82.5
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 5.7e-45 184.1 114 80.7
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 7.4e-45 183.7 114 81.6
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 7.4e-45 183.7 114 81.6
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 1.0e-41 173.3 93 91.4
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 1.9e-40 169.1 115 75.7
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 1.4e-38 162.9 114 73.7
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 6.3e-36 154.1 113 71.7
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 3.1e-35 151.8 109 71.6
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 2.1e-31 139.0 122 65.6
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 3.4e-29 131.7 121 57.9
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 1.4e-14 83.2 105 47.6
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 4.0e-14 81.6 99 46.5
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 1.2e-13 80.1 102 45.1
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 1.3e-12 76.6 116 42.2
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 1.3e-12 76.6 116 42.2
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 1.3e-12 76.6 89 48.3
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.7e-12 76.3 127 42.5
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 2.2e-12 75.9 111 41.4
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 2.2e-12 75.9 62 61.3
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 2.2e-12 75.9 92 46.7
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 3.7e-12 75.1 101 44.6
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 6.4e-12 74.3 93 46.2
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 6.4e-12 74.3 97 45.4
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 1.4e-11 73.2 121 38.8
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 1.4e-11 73.2 121 38.8
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 1.9e-11 72.8 96 44.8
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 3.2e-11 72.0 112 42.0
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 5.4e-11 71.2 104 43.3
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 7.0e-11 70.9 122 41.8
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 9.2e-11 70.5 127 40.9
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 9.2e-11 70.5 92 44.6
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 1.2e-10 70.1 123 39.0
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 1.2e-10 70.1 93 45.2
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 1.6e-10 69.7 88 43.2
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 2.0e-10 69.3 111 40.5
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 2.0e-10 69.3 96 44.8
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 2.0e-10 69.3 123 38.2
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 2.7e-10 68.9 122 38.5
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 3.5e-10 68.6 124 37.9
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 3.5e-10 68.6 54 63.0
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 4.6e-10 68.2 77 46.8
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 4.6e-10 68.2 117 39.3
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 6.0e-10 67.8 77 46.8
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 1.7e-09 66.2 56 64.3
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 1.7e-09 66.2 90 42.2
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 2.3e-09 65.9 100 42.0
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 3.0e-09 65.5 45 68.9
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 5.0e-09 64.7 76 47.4
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 6.6e-09 64.3 95 45.3
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 6.6e-09 64.3 125 42.4
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 1.5e-08 63.2 59 55.9
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 1.9e-08 62.8 112 40.2
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 2.5e-08 62.4 52 57.7
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 3.3e-08 62.0 85 43.5
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 3.3e-08 62.0 63 52.4
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 3.3e-08 62.0 63 52.4
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 3.3e-08 62.0 63 52.4
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 4.3e-08 61.6 77 45.5
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 4.3e-08 61.6 62 50.0
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 5.6e-08 61.2 96 37.5
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 5.6e-08 61.2 121 39.7
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 9.5e-08 60.5 111 37.8
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 2.8e-07 58.9 67 49.3
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 1.4e-06 56.6 52 53.8
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 1.4e-06 56.6 111 39.6
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 1.8e-06 56.2 37 67.6
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 1.8e-06 56.2 55 49.1
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 1.8e-06 56.2 55 49.1
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 8.9e-06 53.9 52 48.1
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 8.9e-06 53.9 38 63.2


User provided reference genes

Program Settings