Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 3.6e-264 914.4 485 100.0
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 6.1e-256 887.1 485 97.9
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 5.1e-186 654.8 489 77.7
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 5.1e-186 654.8 489 77.7
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 3.3e-177 625.5 489 75.1
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 6.7e-170 601.3 519 69.2
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 7.2e-148 528.1 526 63.9
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 4.2e-140 502.3 516 61.2
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 8.8e-130 468.0 496 59.9
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 4.1e-127 459.1 520 57.9
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 1.2e-126 457.6 497 58.8
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.0e-125 454.5 522 57.3
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 2.4e-111 406.8 514 52.5
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.4e-82 311.2 524 44.5
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 6.4e-64 249.2 553 38.7
C07p46840 Brassica napus HOM05D006793 ORTHO05D003476 8.7e-45 185.7 359 43.2
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.6e-38 164.9 541 32.3
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 6.0e-38 162.9 496 32.3
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 2.5e-36 157.5 525 31.0
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 9.7e-36 155.6 492 32.5
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.6e-35 154.8 496 33.1
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 1.8e-34 151.4 532 30.3
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 5.3e-34 149.8 492 31.9
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 2.0e-33 147.9 573 29.1
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 2.6e-33 147.5 494 31.4
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.6e-33 147.5 515 30.5
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 4.5e-33 146.7 508 30.5
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 5.9e-33 146.4 564 30.1
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.0e-32 145.6 499 32.5
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.3e-32 145.2 510 32.7
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 1.7e-32 144.8 488 29.5
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 2.2e-32 144.4 506 32.4
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 2.9e-32 144.1 534 30.9
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 2.9e-32 144.1 528 29.5
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 2.9e-32 144.1 543 29.1
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 6.5e-32 142.9 507 30.0
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.1e-31 142.1 515 29.9
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 3.2e-31 140.6 499 31.3
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 4.2e-31 140.2 492 31.7
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 9.4e-31 139.0 499 28.5
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 9.4e-31 139.0 507 30.4
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 1.6e-30 138.3 489 31.7
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 1.6e-30 138.3 497 29.6
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.6e-30 138.3 504 30.0
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 3.6e-30 137.1 521 31.9
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 3.6e-30 137.1 517 31.5
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 3.6e-30 137.1 539 29.1
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 6.1e-30 136.3 498 31.1
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 7.9e-30 136.0 518 30.7
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.0e-29 135.6 522 29.3
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 1.4e-29 135.2 507 32.0
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 1.4e-29 135.2 505 30.5
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.8e-29 134.8 498 30.3
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.8e-29 134.8 515 29.9
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 3.9e-29 133.7 527 30.0
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 3.9e-29 133.7 528 29.0
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 6.7e-29 132.9 529 31.4
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 3.3e-28 130.6 513 31.4
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 4.3e-28 130.2 562 28.8
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 4.3e-28 130.2 525 29.3
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 5.7e-28 129.8 524 29.0
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 5.7e-28 129.8 493 28.4
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 1.7e-27 128.3 497 31.8
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 3.7e-27 127.1 533 29.6
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 4.8e-27 126.7 182 45.6
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 6.3e-27 126.3 486 29.6
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 8.2e-27 125.9 512 29.3
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.1e-26 125.6 520 29.6
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.8e-26 124.8 510 29.8
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 1.8e-26 124.8 505 28.1
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 9.1e-26 122.5 528 29.5
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 9.1e-26 122.5 523 28.5
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.0e-25 121.3 505 29.5
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 2.0e-25 121.3 108 60.2
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 2.6e-25 120.9 288 35.8
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 5.9e-25 119.8 520 29.0
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 5.9e-25 119.8 505 26.7
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 7.7e-25 119.4 493 29.2
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.7e-24 118.2 542 28.4
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 1.7e-24 118.2 504 28.6
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 2.2e-24 117.9 505 26.5
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 2.9e-24 117.5 128 54.7
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 3.8e-24 117.1 523 27.0
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 5.0e-24 116.7 524 27.7
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 8.5e-24 115.9 555 26.8
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 7.2e-23 112.8 540 28.9
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.2e-22 112.1 498 28.7
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 1.2e-22 112.1 134 48.5
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 2.7e-22 110.9 494 27.7
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 3.6e-22 110.5 174 41.4
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 1.4e-21 108.6 371 31.0
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 2.3e-21 107.8 485 28.7
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 3.9e-21 107.1 532 27.8
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 2.0e-20 104.8 346 30.9
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 2.6e-20 104.4 245 36.3
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 3.3e-20 104.0 90 57.8
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 3.3e-20 104.0 519 26.6
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 7.4e-20 102.8 513 26.9
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 1.3e-19 102.1 600 26.0
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 8.2e-19 99.4 550 25.1
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 2.4e-18 97.8 533 27.6
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 3.1e-18 97.4 86 59.3
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 4.5e-17 93.6 103 49.5
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 7.7e-17 92.8 75 61.3
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 2.7e-14 84.3 93 47.3
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 6.1e-14 83.2 59 69.5
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 8.0e-14 82.8 403 27.8
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 2.3e-13 81.3 151 37.1
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 6.7e-13 79.7 49 77.6
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.1e-12 79.0 240 31.2
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 1.5e-12 78.6 398 29.1
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.6e-12 77.8 486 26.3
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 7.4e-12 76.3 447 24.4
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 1.4e-10 72.0 346 28.9
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 5.3e-10 70.1 85 41.2
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 7.0e-10 69.7 79 38.0
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 9.1e-10 69.3 82 40.2
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 2.6e-09 67.8 199 29.1
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 2.6e-09 67.8 70 42.9
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 4.5e-09 67.0 75 38.7
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 5.9e-09 66.6 76 36.8
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 7.7e-09 66.2 71 43.7
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.3e-08 65.5 61 44.3
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 1.7e-08 65.1 286 26.2
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 5.0e-08 63.5 210 24.3
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 6.5e-08 63.2 223 26.0
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 8.5e-08 62.8 104 34.6
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 1.1e-07 62.4 68 41.2
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 1.1e-07 62.4 76 38.2
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.1e-07 62.4 231 24.2
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 1.9e-07 61.6 461 24.5
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 1.9e-07 61.6 218 27.5
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 2.5e-07 61.2 88 33.0
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.5e-07 61.2 232 25.0
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 2.5e-07 61.2 75 38.7
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 3.2e-07 60.8 50 50.0
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 3.2e-07 60.8 229 24.5
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 3.2e-07 60.8 79 39.2
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 4.2e-07 60.5 74 39.2
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 4.2e-07 60.5 83 33.7
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 4.2e-07 60.5 200 26.0
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 5.5e-07 60.1 74 39.2
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 5.5e-07 60.1 115 29.6
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 7.2e-07 59.7 152 28.9
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 7.2e-07 59.7 86 37.2
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 7.2e-07 59.7 81 37.0
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 9.4e-07 59.3 77 36.4
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 9.4e-07 59.3 214 25.7
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 9.4e-07 59.3 220 25.9
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 9.4e-07 59.3 58 41.4
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 1.2e-06 58.9 305 24.3
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.6e-06 58.5 50 50.0
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 1.6e-06 58.5 75 36.0
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 2.1e-06 58.2 55 43.6
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 2.1e-06 58.2 71 35.2
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 2.7e-06 57.8 98 31.6
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 3.6e-06 57.4 211 26.5
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 3.6e-06 57.4 54 40.7
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 3.6e-06 57.4 75 36.0
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 3.6e-06 57.4 54 44.4
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 3.6e-06 57.4 75 34.7
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 3.6e-06 57.4 71 33.8
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 4.7e-06 57.0 95 41.1
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 6.1e-06 56.6 52 42.3
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 6.1e-06 56.6 225 24.9
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 6.1e-06 56.6 75 33.3
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 6.1e-06 56.6 80 38.8
PSO063G6649 Papaver somniferum HOM05D045975 ORTHO05D003476 8.0e-06 56.2 75 34.7
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 8.0e-06 56.2 85 29.4


User provided reference genes

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