Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 3.5e-40 167.9 89 100.0
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 3.5e-40 167.9 89 100.0
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 3.5e-40 167.9 89 100.0
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 3.5e-40 167.9 89 100.0
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 3.5e-40 167.9 89 100.0
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 3.5e-40 167.9 89 100.0
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 1.4e-38 162.5 89 96.6
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 7.2e-38 160.2 89 95.5
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 8.0e-37 156.8 91 92.3
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 3.3e-35 151.4 89 88.8
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 1.1e-33 146.4 89 84.3
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 1.1e-33 146.4 89 84.3
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 1.1e-33 146.4 89 84.3
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 1.8e-33 145.6 89 85.4
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 1.8e-33 145.6 89 85.4
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 4.1e-33 144.4 89 87.6
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 5.3e-33 144.1 88 88.6
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 7.0e-33 143.7 89 86.5
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 1.7e-31 139.0 77 92.2
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 2.8e-26 121.7 73 84.9
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 6.3e-26 120.6 89 74.2
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 9.4e-22 106.7 92 66.3
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 8.0e-21 103.6 78 74.4
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 2.8e-18 95.1 91 63.7
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 6.3e-18 94.0 73 65.8
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 8.3e-18 93.6 70 70.0
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 1.1e-17 93.2 73 72.6
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 3.1e-17 91.7 84 63.1
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 9.1e-17 90.1 68 69.1
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 1.2e-16 89.7 72 66.7
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 1.6e-16 89.4 78 62.8
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 2.0e-16 89.0 70 67.1
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 2.0e-16 89.0 89 56.2
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 2.7e-16 88.6 70 67.1
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 2.7e-16 88.6 68 64.7
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 3.5e-16 88.2 70 68.6
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 4.5e-16 87.8 71 67.6
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 5.9e-16 87.4 83 61.4
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 5.9e-16 87.4 72 66.7
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 5.9e-16 87.4 72 65.3
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 7.7e-16 87.0 73 65.8
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 7.7e-16 87.0 80 57.5
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 1.0e-15 86.7 70 62.9
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 1.0e-15 86.7 87 57.5
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 1.7e-15 85.9 81 59.3
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.7e-15 85.9 76 65.8
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.3e-15 85.5 79 62.0
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 2.3e-15 85.5 87 56.3
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.9e-15 85.1 72 62.5
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 3.8e-15 84.7 83 59.0
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 3.8e-15 84.7 71 64.8
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 5.0e-15 84.3 79 64.6
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 5.0e-15 84.3 72 63.9
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 6.6e-15 84.0 80 60.0
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 6.6e-15 84.0 71 59.2
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 6.6e-15 84.0 77 61.0
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 6.6e-15 84.0 68 66.2
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 6.6e-15 84.0 73 64.4
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 8.6e-15 83.6 83 57.8
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.1e-14 83.2 79 63.3
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 1.1e-14 83.2 75 61.3
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 1.5e-14 82.8 85 58.8
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 1.5e-14 82.8 83 59.0
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 3.3e-14 81.6 83 57.8
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 3.3e-14 81.6 87 58.6
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 3.3e-14 81.6 93 53.8
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 5.5e-14 80.9 86 55.8
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 9.5e-14 80.1 78 61.5
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 1.2e-13 79.7 75 58.7
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 2.8e-13 78.6 85 56.5
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 6.1e-13 77.4 97 52.6
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 8.0e-13 77.0 78 59.0
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.0e-12 75.1 100 51.0
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.0e-12 75.1 100 51.0
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 3.0e-12 75.1 68 55.9
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 3.0e-12 75.1 68 55.9
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 3.0e-12 75.1 78 60.3
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 4.0e-12 74.7 96 50.0
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.0e-12 74.7 98 51.0
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 4.0e-12 74.7 90 54.4
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 5.2e-12 74.3 92 52.2
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 5.2e-12 74.3 93 52.7
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 6.8e-12 73.9 84 53.6
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 6.8e-12 73.9 97 50.5
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 8.9e-12 73.6 91 51.6
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 8.9e-12 73.6 91 51.6
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.5e-11 72.8 69 50.7
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 4.4e-11 71.2 74 55.4
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 4.4e-11 71.2 74 55.4
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 4.4e-11 71.2 74 55.4
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 4.4e-11 71.2 69 59.4
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 9.8e-11 70.1 90 52.2
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 1.3e-10 69.7 74 54.1
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 1.3e-10 69.7 74 54.1
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 1.3e-10 69.7 83 51.8
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 2.2e-10 68.9 103 41.7
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 2.2e-10 68.9 72 58.3
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 2.8e-10 68.6 73 57.5
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 3.7e-10 68.2 81 51.9
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 8.3e-10 67.0 73 52.1
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 1.1e-09 66.6 75 53.3
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 2.4e-09 65.5 79 51.9
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 3.1e-09 65.1 78 52.6
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 4.1e-09 64.7 77 48.1
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 5.4e-09 64.3 54 66.7
Thhalv10017703m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 2.0e-08 62.4 45 71.1
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 2.0e-08 62.4 88 47.7
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 2.0e-08 62.4 99 42.4
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 2.7e-08 62.0 55 61.8
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 2.7e-08 62.0 83 50.6
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 7.8e-08 60.5 73 53.4
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 7.8e-08 60.5 79 51.9
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 1.3e-07 59.7 70 50.0
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 1.3e-07 59.7 83 48.2
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 1.3e-07 59.7 55 61.8
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 1.3e-07 59.7 69 53.6
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 1.7e-07 59.3 100 44.0
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 1.7e-07 59.3 63 58.7
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 1.7e-07 59.3 69 53.6
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 2.3e-07 58.9 69 53.6
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 2.9e-07 58.5 50 64.0
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 3.9e-07 58.2 74 55.4
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 3.9e-07 58.2 103 43.7
Sp4g18110 Schrenkiella parvula HOM05D005113 ORTHO05D006045 3.9e-07 58.2 43 67.4
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 5.0e-07 57.8 88 43.2
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 6.6e-07 57.4 72 48.6
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 8.6e-07 57.0 105 41.0
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 8.6e-07 57.0 92 45.7
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 1.1e-06 56.6 60 60.0
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 1.5e-06 56.2 79 45.6
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 1.5e-06 56.2 85 45.9
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 2.5e-06 55.5 79 54.4
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 3.3e-06 55.1 72 50.0
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 4.3e-06 54.7 63 54.0
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 5.6e-06 54.3 57 54.4
Phvul.007G265600 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 7.3e-06 53.9 63 52.4
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 9.5e-06 53.5 74 45.9


User provided reference genes

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