Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p05780 Brassica napus HOM05D001128 ORTHO05D000721 1.2e-172 609.8 301 100.0
BraA04t16274Z Brassica rapa HOM05D001128 ORTHO05D000721 4.7e-166 587.8 310 94.5
BcaC02g09109 Brassica carinata HOM05D001128 ORTHO05D000721 1.2e-129 466.8 314 80.6
C04p38580 Brassica napus HOM05D001128 ORTHO05D000721 5.1e-128 461.5 320 78.8
BolC4t25433H Brassica oleracea HOM05D001128 ORTHO05D000721 4.3e-127 458.4 338 76.0
BcaB02g08495 Brassica carinata HOM05D001128 ORTHO05D000721 2.4e-101 372.9 328 68.9
Sp5g08400 Schrenkiella parvula HOM05D001128 ORTHO05D000721 1.1e-93 347.4 362 59.1
A09p46920 Brassica napus HOM05D001128 ORTHO05D000721 1.9e-82 310.1 333 58.6
BraA09t40159Z Brassica rapa HOM05D001128 ORTHO05D000721 8.0e-81 304.7 334 57.8
BcaC07g39751 Brassica carinata HOM05D001128 ORTHO05D000721 7.0e-77 291.6 349 55.6
C08p29250 Brassica napus HOM05D001128 ORTHO05D000721 7.0e-77 291.6 349 55.6
BolC8t50527H Brassica oleracea HOM05D001128 ORTHO05D000721 8.6e-75 284.6 362 53.6
Thhalv10010478m.g Eutrema salsugineum HOM05D001128 ORTHO05D000721 4.5e-68 262.3 378 50.5
BcaB01g00225 Brassica carinata HOM05D001128 ORTHO05D000721 2.3e-67 260.0 346 50.9
AL5G35000 Arabidopsis lyrata HOM05D001128 ORTHO05D000721 2.0e-60 236.9 364 47.8
BcaB02g07755 Brassica carinata HOM05D001128 ORTHO05D000721 2.1e-57 226.9 347 49.0
CARHR163900 Cardamine hirsuta HOM05D001128 ORTHO05D000721 3.6e-57 226.1 355 47.9
Carub.0005s2059 Capsella rubella HOM05D001128 ORTHO05D000721 2.3e-56 223.4 367 45.8
AT3G54000 Arabidopsis thaliana HOM05D001128 ORTHO05D000721 2.3e-51 206.8 365 44.4
BcaC08g44658 Brassica carinata HOM05D001128 ORTHO05D000721 3.9e-51 206.1 356 44.7
A07p21900 Brassica napus HOM05D001128 ORTHO05D000721 3.9e-51 206.1 337 47.2
C06p21800 Brassica napus HOM05D001128 ORTHO05D000721 3.9e-51 206.1 356 44.7
BraA07t29871Z Brassica rapa HOM05D001128 ORTHO05D000721 6.6e-51 205.3 348 46.3
THA.LOC104806538 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 5.6e-50 202.2 398 42.5
BolC6t37368H Brassica oleracea HOM05D001128 ORTHO05D000721 9.5e-50 201.4 351 44.7
THA.LOC104823397 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 6.0e-44 182.2 406 40.9
Aa31LG10G8860 Aethionema arabicum HOM05D001128 ORTHO05D000721 1.2e-36 157.9 361 41.3
THA.LOC104805648 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 1.3e-30 137.9 387 36.2
Thecc.05G027900 Theobroma cacao HOM05D001128 ORTHO05D000721 2.2e-30 137.1 407 34.9
Manes.09G099100 Manihot esculenta HOM05D001128 ORTHO05D000721 3.9e-27 126.3 406 33.7
Cpa.g.sc56.66 Carica papaya HOM05D001128 ORTHO05D000721 5.1e-27 125.9 408 34.8
TWI77G0372 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 3.3e-26 123.2 389 34.7
Gorai.006G178800 Gossypium raimondii HOM05D001128 ORTHO05D000721 1.3e-25 121.3 397 33.5
TWI74G1371 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 1.6e-25 120.9 401 34.9
Gohir.D09G157200 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.8e-25 120.2 398 33.7
Duzib128G0075 Durio zibethinus HOM05D001128 ORTHO05D000721 2.0e-23 114.0 401 33.4
Duzib093G0147 Durio zibethinus HOM05D001128 ORTHO05D000721 5.8e-23 112.5 402 31.6
QL07p027947 Quercus lobata HOM05D001128 ORTHO05D000721 9.9e-23 111.7 407 33.4
Actinidia13814 Actinidia chinensis HOM05D001128 ORTHO05D000721 1.7e-22 110.9 418 32.1
Gohir.A09G161600 Gossypium hirsutum HOM05D001128 ORTHO05D000721 3.8e-22 109.8 406 31.3
Gohir.A04G086100 Gossypium hirsutum HOM05D001128 ORTHO05D000721 6.4e-22 109.0 402 33.3
CSS0004370 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 1.9e-21 107.5 337 34.4
COL.COLO4_14683 Corchorus olitorius HOM05D001128 ORTHO05D000721 7.1e-21 105.5 407 32.4
Oeu013161.1 Olea europaea HOM05D001128 ORTHO05D000721 2.7e-20 103.6 378 32.0
Gohir.D04G126000 Gossypium hirsutum HOM05D001128 ORTHO05D000721 3.5e-20 103.2 402 33.1
TAR636G2726 Trochodendron aralioides HOM05D001128 ORTHO05D000721 4.6e-20 102.8 375 29.6
CiPaw.10G150200 Carya illinoinensis HOM05D001128 ORTHO05D000721 6.0e-20 102.4 412 29.9
CANSAT35G1304 Cannabis sativa HOM05D001128 ORTHO05D000721 1.3e-19 101.3 418 31.6
Gorai.012G109000 Gossypium raimondii HOM05D001128 ORTHO05D000721 1.8e-19 100.9 402 32.8
Gorai.007G377500 Gossypium raimondii HOM05D001128 ORTHO05D000721 8.7e-19 98.6 357 35.0
Prupe.6G265300 Prunus persica HOM05D001128 ORTHO05D000721 1.5e-18 97.8 353 33.1
Actinidia29161 Actinidia chinensis HOM05D001128 ORTHO05D000721 1.9e-18 97.4 415 30.4
Oeu001830.1 Olea europaea HOM05D001128 ORTHO05D000721 2.5e-18 97.1 389 31.6
Haze_20899 Corylus avellana HOM05D001128 ORTHO05D000721 3.3e-18 96.7 417 31.2
Hma1.2p1_1521F.1_g288670 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 7.4e-18 95.5 416 29.8
Rhsim05G0200600 Rhododendron simsii HOM05D001128 ORTHO05D000721 7.4e-18 95.5 421 29.9
ClCG10G021590 Citrullus lanatus HOM05D001128 ORTHO05D000721 1.3e-17 94.7 375 29.3
DCAR_028803 Daucus carota HOM05D001128 ORTHO05D000721 1.3e-17 94.7 374 31.3
Gohir.D11G347100 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.3e-17 94.7 300 36.0
Oeu018335.1 Olea europaea HOM05D001128 ORTHO05D000721 1.3e-17 94.7 381 32.3
TAR623G0478 Trochodendron aralioides HOM05D001128 ORTHO05D000721 1.3e-17 94.7 410 31.0
vmacro20201 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 1.3e-17 94.7 393 31.0
CiPaw.09G202700 Carya illinoinensis HOM05D001128 ORTHO05D000721 1.6e-17 94.4 284 34.5
Sed0025256 Sechium edule HOM05D001128 ORTHO05D000721 1.6e-17 94.4 362 29.0
CsaV3_3G034430 Cucumis sativus L. HOM05D001128 ORTHO05D000721 2.8e-17 93.6 376 32.4
MELO3C009213.2 Cucumis melo HOM05D001128 ORTHO05D000721 4.8e-17 92.8 373 31.1
Cfa017294 Carpinus fangiana HOM05D001128 ORTHO05D000721 8.1e-17 92.0 422 30.6
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 1.4e-16 91.3 356 31.7
ClCG10G021600 Citrullus lanatus HOM05D001128 ORTHO05D000721 1.8e-16 90.9 360 30.0
Gohir.A11G328200 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.8e-16 90.9 363 33.3
BcaB02g07756 Brassica carinata HOM05D001128 ORTHO05D000721 2.4e-16 90.5 151 45.0
Lsat_1_v5_gn_8_80861 Lactuca sativa HOM05D001128 ORTHO05D000721 3.1e-16 90.1 398 31.2
Phvul.008G113400 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 3.1e-16 90.1 396 29.5
SalBow1G2079 Salvia bowleyana HOM05D001128 ORTHO05D000721 6.9e-16 89.0 370 30.0
Hma1.2p1_0671F.1_g200660 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 1.2e-15 88.2 406 29.6
Potri.016G105000 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.2e-15 88.2 428 30.8
Glyma.07G141000 Glycine max HOM05D001128 ORTHO05D000721 1.5e-15 87.8 396 29.0
Potri.006G093000 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.5e-15 87.8 431 30.4
Duzib106G0325 Durio zibethinus HOM05D001128 ORTHO05D000721 2.6e-15 87.0 337 33.8
Lj3C959G13 Lonicera japonica HOM05D001128 ORTHO05D000721 7.6e-15 85.5 333 30.6
VMungo1383G1773 Vigna mungo HOM05D001128 ORTHO05D000721 7.6e-15 85.5 398 30.7
MSTRG.5621 Avicennia marina HOM05D001128 ORTHO05D000721 1.7e-14 84.3 326 32.8
Atru.chr8.2106 Acer truncatum HOM05D001128 ORTHO05D000721 4.9e-14 82.8 436 30.0
MELO3C003199.2 Cucumis melo HOM05D001128 ORTHO05D000721 4.9e-14 82.8 398 29.4
CsaV3_4G025740 Cucumis sativus L. HOM05D001128 ORTHO05D000721 6.4e-14 82.4 400 29.0
Sabra16G0104100 Salix brachista HOM05D001128 ORTHO05D000721 8.4e-14 82.0 389 30.8
Nitab4.5_0000008g0230 Nicotiana tabacum HOM05D001128 ORTHO05D000721 2.5e-13 80.5 323 32.5
TPR.G13630 Trifolium pratense HOM05D001128 ORTHO05D000721 3.2e-13 80.1 424 28.3
Oeu009915.1 Olea europaea HOM05D001128 ORTHO05D000721 5.5e-13 79.3 388 28.4
MSTRG.10240 Avicennia marina HOM05D001128 ORTHO05D000721 9.3e-13 78.6 367 29.7
Nn2g13535 Nelumbo nucifera HOM05D001128 ORTHO05D000721 9.3e-13 78.6 385 28.6
ClCG00G003060 Citrullus lanatus HOM05D001128 ORTHO05D000721 1.2e-12 78.2 260 33.5
HPP92_026966 Vanilla planifolia HOM05D001128 ORTHO05D000721 1.2e-12 78.2 335 26.6
Aqoxy1G00786 Aquilegia oxysepala HOM05D001128 ORTHO05D000721 1.6e-12 77.8 405 28.1
Nitab4.5_0003264g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 2.1e-12 77.4 324 31.8
Lsat_1_v5_gn_9_31700 Lactuca sativa HOM05D001128 ORTHO05D000721 4.6e-12 76.3 355 29.9
Nitab4.5_0000119g0370 Nicotiana tabacum HOM05D001128 ORTHO05D000721 4.6e-12 76.3 328 29.9
MD12G1155400 Malus domestica HOM05D001128 ORTHO05D000721 7.9e-12 75.5 369 29.3
PSO384G2375 Papaver somniferum HOM05D001128 ORTHO05D000721 7.9e-12 75.5 423 29.1
HPP92_015345 Vanilla planifolia HOM05D001128 ORTHO05D000721 7.9e-12 75.5 336 26.8
PSO339G4622 Papaver somniferum HOM05D001128 ORTHO05D000721 1.0e-11 75.1 427 28.6
Migut.J00260 Erythranthe guttata HOM05D001128 ORTHO05D000721 1.3e-11 74.7 376 28.2
PGSC0003DMG400019191 Solanum tuberosum HOM05D001128 ORTHO05D000721 1.8e-11 74.3 374 29.7
MBI05_g02674_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 2.3e-11 73.9 199 35.7
Nitab4.5_0002823g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 2.3e-11 73.9 388 29.6
Sed0002927 Sechium edule HOM05D001128 ORTHO05D000721 5.1e-11 72.8 345 29.6
Solyc10g084970.2 Solanum lycopersicum HOM05D001128 ORTHO05D000721 6.7e-11 72.4 401 29.2
Lj1g0009897 Lotus japonicus HOM05D001128 ORTHO05D000721 8.7e-11 72.0 405 26.4
RcHm_v2.0_Chr3g0464501 Rosa chinensis HOM05D001128 ORTHO05D000721 8.7e-11 72.0 369 27.9
Sopen10g034430 Solanum pennellii HOM05D001128 ORTHO05D000721 1.1e-10 71.6 394 28.9
Glyma.18G191000 Glycine max HOM05D001128 ORTHO05D000721 1.5e-10 71.2 278 29.1
unitig_749.g14177 Utricularia gibba HOM05D001128 ORTHO05D000721 1.5e-10 71.2 276 29.3
Ca_07581_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 2.5e-10 70.5 288 30.2
Dinv37107 Davidia involucrata HOM05D001128 ORTHO05D000721 2.5e-10 70.5 202 37.6
Peaxi162Scf00132g00911 Petunia axillaris HOM05D001128 ORTHO05D000721 2.5e-10 70.5 371 27.8
HPP92_018175 Vanilla planifolia HOM05D001128 ORTHO05D000721 2.5e-10 70.5 341 28.4
Ca_05146_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 9.6e-10 68.6 362 26.8
MBI14_g02856_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 1.3e-09 68.2 269 28.6
PGR031G3883 Punica granatum HOM05D001128 ORTHO05D000721 1.3e-09 68.2 334 28.4
CDE02G2787 Ceratophyllum demersum HOM05D001128 ORTHO05D000721 2.8e-09 67.0 329 27.4
PGR004G1424 Punica granatum HOM05D001128 ORTHO05D000721 2.8e-09 67.0 377 28.4
Medtr0027s0090 Medicago truncatula HOM05D001128 ORTHO05D000721 3.7e-09 66.6 386 26.2
Sed0022303 Sechium edule HOM05D001128 ORTHO05D000721 4.8e-09 66.2 348 26.7
Migut.L01977 Erythranthe guttata HOM05D001128 ORTHO05D000721 6.2e-09 65.9 307 29.6
Sopen09g006510 Solanum pennellii HOM05D001128 ORTHO05D000721 6.2e-09 65.9 406 28.1
Eucgr.B02733 Eucalyptus grandis HOM05D001128 ORTHO05D000721 8.2e-09 65.5 389 27.0
Psat7g240440 Pisum sativum HOM05D001128 ORTHO05D000721 8.2e-09 65.5 364 28.0
LjContig00047_ERROPOS266959g0024685 Lotus japonicus HOM05D001128 ORTHO05D000721 1.4e-08 64.7 379 28.2
Solyc09g011690.4 Solanum lycopersicum HOM05D001128 ORTHO05D000721 1.4e-08 64.7 406 27.6
Eucgr.K03018 Eucalyptus grandis HOM05D001128 ORTHO05D000721 1.8e-08 64.3 409 27.1
HanXRQChr10g0292031 Helianthus annuus HOM05D001128 ORTHO05D000721 1.8e-08 64.3 324 27.8
Psat0s1845g0240 Pisum sativum HOM05D001128 ORTHO05D000721 1.8e-08 64.3 313 29.7
MSTRG.19049 Avicennia marina HOM05D001128 ORTHO05D000721 2.4e-08 63.9 239 32.2
Oeu024612.2 Olea europaea HOM05D001128 ORTHO05D000721 2.4e-08 63.9 133 39.8
TAR633G0212 Trochodendron aralioides HOM05D001128 ORTHO05D000721 2.4e-08 63.9 236 33.5
PGSC0003DMG400011013 Solanum tuberosum HOM05D001128 ORTHO05D000721 3.1e-08 63.5 401 27.9
ECA247G0052 Erigeron canadensis HOM05D001128 ORTHO05D000721 5.3e-08 62.8 322 27.6
GSVIVG01024844001 Vitis vinifera HOM05D001128 ORTHO05D000721 6.9e-08 62.4 304 30.6
HanXRQChr06g0176291 Helianthus annuus HOM05D001128 ORTHO05D000721 9.0e-08 62.0 402 27.1
Atru.chr3.4033 Acer truncatum HOM05D001128 ORTHO05D000721 1.2e-07 61.6 231 32.0
Actinidia14078 Actinidia chinensis HOM05D001128 ORTHO05D000721 1.5e-07 61.2 379 27.4
Glyma.03G073712 Glycine max HOM05D001128 ORTHO05D000721 1.5e-07 61.2 377 29.7
Gohir.D10G238700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.0e-07 60.8 395 25.3
MELO3C009212.2 Cucumis melo HOM05D001128 ORTHO05D000721 3.4e-07 60.1 336 27.4
Glyma.11G225400 Glycine max HOM05D001128 ORTHO05D000721 3.4e-07 60.1 364 26.4
Gorai.012G073700 Gossypium raimondii HOM05D001128 ORTHO05D000721 5.8e-07 59.3 389 26.7
Gorai.011G274600 Gossypium raimondii HOM05D001128 ORTHO05D000721 7.6e-07 58.9 401 24.9
Nitab4.5_0000652g0060 Nicotiana tabacum HOM05D001128 ORTHO05D000721 7.6e-07 58.9 321 29.9
Gohir.A10G226400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.0e-06 58.5 397 24.9
Duzib168G0052 Durio zibethinus HOM05D001128 ORTHO05D000721 2.2e-06 57.4 300 28.7
Ah.10g036830 Amaranthus hybridus HOM05D001128 ORTHO05D000721 2.9e-06 57.0 405 25.9
Gohir.D04G065500 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.9e-06 57.0 388 26.3
Manes.01G167300 Manihot esculenta HOM05D001128 ORTHO05D000721 2.9e-06 57.0 330 24.8
AUR62022804 Chenopodium quinoa HOM05D001128 ORTHO05D000721 3.8e-06 56.6 399 25.8
FAN06G3577 Fragaria x ananassa HOM05D001128 ORTHO05D000721 6.5e-06 55.8 320 25.6
Os01g0850000 Oryza sativa ssp. japonica HOM05D001128 ORTHO05D000721 8.4e-06 55.5 358 23.7


User provided reference genes

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