Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 0.0e+00 1177.9 593 100.0
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 0.0e+00 1155.2 593 98.0
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 0.0e+00 1127.1 593 95.6
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 0.0e+00 1120.1 593 95.1
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 0.0e+00 1083.2 593 91.9
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 1.4e-278 962.6 615 82.0
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 2.9e-268 928.3 612 79.7
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 9.3e-267 923.3 613 79.3
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 3.9e-265 917.9 612 79.1
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 2.8e-263 911.8 613 78.8
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.8e-262 909.1 612 78.6
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 1.2e-261 906.4 638 76.5
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 3.8e-260 901.4 596 78.9
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 1.1e-256 889.8 613 77.5
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 9.1e-254 880.2 590 77.3
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.5e-248 862.8 611 74.8
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 2.5e-243 845.5 614 74.3
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 3.4e-208 728.8 636 64.3
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 4.6e-197 691.8 626 62.8
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 4.7e-186 655.2 637 59.2
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.1e-162 576.6 558 58.8
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 1.8e-156 557.0 630 50.2
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 3.3e-155 552.7 635 50.6
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 5.7e-155 552.0 630 50.3
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 4.1e-153 545.8 605 49.9
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.6e-152 541.6 605 49.8
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.2e-151 540.0 605 49.4
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 1.8e-148 530.4 639 49.1
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 6.7e-148 528.5 633 49.1
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.9e-147 526.9 643 49.3
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 7.4e-147 525.0 637 49.5
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 2.8e-146 523.1 634 48.7
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 3.1e-145 519.6 636 49.1
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 1.5e-144 517.3 636 47.5
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 1.0e-143 514.6 634 49.2
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 3.8e-143 512.7 641 48.2
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 4.2e-142 509.2 642 47.0
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 7.2e-142 508.4 630 47.9
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.9e-141 505.0 630 47.9
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.8e-138 496.5 638 46.4
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 7.0e-137 491.9 663 44.2
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 5.0e-135 485.7 636 45.9
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 6.5e-135 485.3 611 47.5
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 2.5e-134 483.4 607 47.8
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 2.5e-134 483.4 622 45.3
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 5.7e-131 472.2 613 45.7
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.8e-129 467.2 615 44.7
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.2e-128 464.5 702 43.2
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 5.9e-128 462.2 648 45.2
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 1.7e-127 460.7 639 44.3
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 5.0e-127 459.1 610 45.2
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 1.1e-126 458.0 612 46.2
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 3.2e-126 456.4 611 46.8
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 1.6e-125 454.1 621 42.5
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 1.6e-125 454.1 611 46.3
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 2.7e-125 453.4 645 44.5
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 1.0e-124 451.4 608 45.6
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 1.8e-124 450.7 611 44.4
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 5.2e-124 449.1 647 44.4
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 6.7e-124 448.7 621 44.1
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 8.8e-124 448.4 629 44.0
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 7.5e-123 445.3 634 45.0
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 9.7e-123 444.9 638 43.6
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 1.3e-122 444.5 607 45.5
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 1.3e-122 444.5 640 45.5
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 2.2e-122 443.7 640 45.3
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.8e-122 443.4 612 43.6
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 3.7e-122 443.0 624 44.4
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 5.3e-121 439.1 648 43.8
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 5.3e-121 439.1 632 43.0
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 5.3e-121 439.1 633 44.4
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 1.6e-120 437.6 614 44.5
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 2.0e-120 437.2 635 43.3
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 2.7e-120 436.8 633 43.4
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 3.5e-120 436.4 618 44.5
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 4.5e-120 436.0 612 44.3
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 4.5e-120 436.0 614 43.3
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 4.5e-120 436.0 606 44.7
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 5.9e-120 435.6 607 44.6
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.3e-119 434.5 501 49.9
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 2.2e-119 433.7 632 43.0
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 8.5e-119 431.8 618 44.0
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 1.5e-118 431.0 609 44.5
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 5.5e-118 429.1 658 42.1
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 8.0e-117 425.2 618 43.7
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 1.4e-116 424.5 626 43.6
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.3e-116 423.7 638 42.5
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 2.3e-116 423.7 630 42.4
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.0e-116 423.3 648 42.0
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 3.4e-115 419.9 637 43.0
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 5.7e-115 419.1 617 44.2
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 1.7e-114 417.5 631 42.6
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 2.2e-114 417.2 617 42.6
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 3.7e-114 416.4 505 49.3
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 1.4e-113 414.5 606 42.2
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 2.4e-113 413.7 628 41.9
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 4.1e-113 412.9 612 43.8
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 2.0e-112 410.6 631 42.2
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.3e-111 407.9 637 41.6
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.9e-111 406.8 669 40.5
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.8e-111 406.4 671 40.5
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.1e-110 404.8 591 43.3
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.2e-109 401.4 648 40.4
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 4.7e-109 399.4 651 40.9
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 8.0e-109 398.7 553 44.1
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.2e-107 394.8 631 40.4
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.8e-106 390.2 619 41.8
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 6.3e-106 389.0 616 40.7
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.8e-105 387.5 616 40.6
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 2.4e-105 387.1 629 42.1
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 9.2e-105 385.2 618 40.5
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 5.9e-104 382.5 610 41.0
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 5.9e-104 382.5 642 40.0
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 6.6e-103 379.0 652 40.6
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 8.6e-103 378.6 618 40.1
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.9e-102 377.5 604 39.2
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 8.9e-100 368.6 592 41.0
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 1.2e-99 368.2 608 39.6
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.5e-99 367.9 396 51.0
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 5.8e-99 365.9 614 38.1
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 9.8e-99 365.2 627 37.5
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 4.9e-98 362.8 632 40.5
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.4e-97 361.3 568 42.1
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 1.7e-95 354.4 400 50.2
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 1.5e-91 341.3 621 36.4
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 1.1e-89 335.1 607 38.1
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.2e-83 315.1 354 52.3
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 2.7e-80 303.9 608 37.3
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.1e-76 292.0 326 51.2
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.2e-74 284.3 459 42.7
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 2.1e-72 277.7 392 45.4
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 6.6e-71 272.7 373 44.2
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.4e-65 254.2 257 51.0
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.1e-64 251.1 346 46.0
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.0e-63 247.3 383 43.1
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 2.8e-61 240.7 463 34.8
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 8.1e-61 239.2 490 34.1
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 3.8e-58 230.3 551 33.9
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.6e-56 224.9 385 39.2
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 3.7e-53 213.8 252 48.4
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 1.4e-52 211.8 389 36.0
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 1.1e-49 202.2 630 29.5
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 2.3e-47 194.5 245 43.7
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 3.3e-46 190.7 579 29.5
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 7.4e-46 189.5 239 46.0
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 5.3e-44 183.3 250 46.0
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.0e-43 181.4 325 40.0
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.0e-42 179.1 203 47.8
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 8.8e-31 139.4 214 39.3
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.0e-30 138.3 179 43.6
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 3.7e-29 134.0 243 40.7
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 2.4e-28 131.3 242 36.8
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 3.4e-27 127.5 257 36.2
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 7.7e-27 126.3 267 33.0
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.9e-26 124.4 97 61.9
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 3.2e-25 120.9 252 34.9
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.2e-24 119.0 142 45.8
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 8.2e-21 106.3 218 38.5
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 9.1e-20 102.8 186 40.3
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 6.1e-16 90.1 171 36.3
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 1.5e-14 85.5 269 29.7
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 7.4e-14 83.2 74 54.1
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 2.8e-13 81.3 178 34.8
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 1.1e-12 79.3 246 31.3
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.4e-12 78.2 137 41.6
Aa31LG2G20020 Aethionema arabicum HOM05D003892 ORTHO05D004522 6.5e-10 70.1 70 64.3
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 6.1e-08 63.5 95 35.8
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 8.0e-08 63.2 92 41.3
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 3.0e-07 61.2 227 27.8
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 3.4e-06 57.8 39 64.1
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 9.7e-06 56.2 128 36.7


User provided reference genes

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