Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p04700 Brassica napus HOM05D006484 ORTHO05D008002 5.7e-150 534.3 279 100.0
BraA04t16182Z Brassica rapa HOM05D006484 ORTHO05D008002 5.7e-150 534.3 279 100.0
BcaC02g09737 Brassica carinata HOM05D006484 ORTHO05D008002 2.3e-143 512.3 279 96.8
C04p37040 Brassica napus HOM05D006484 ORTHO05D008002 2.3e-143 512.3 279 96.8
BolC4t25282H Brassica oleracea HOM05D006484 ORTHO05D008002 2.3e-143 512.3 279 96.8
BcaB02g08436 Brassica carinata HOM05D006484 ORTHO05D008002 2.4e-140 502.3 280 94.6
Sp5g07210 Schrenkiella parvula HOM05D006484 ORTHO05D008002 1.5e-134 483.0 283 91.2
BraA09t40274Z Brassica rapa HOM05D006484 ORTHO05D008002 2.2e-133 479.2 281 91.5
A09p48180 Brassica napus HOM05D006484 ORTHO05D008002 2.9e-133 478.8 281 91.8
C08p30440 Brassica napus HOM05D006484 ORTHO05D008002 6.4e-133 477.6 281 91.5
BcaC07g39842 Brassica carinata HOM05D006484 ORTHO05D008002 8.3e-133 477.2 281 91.1
BolC8t50667H Brassica oleracea HOM05D006484 ORTHO05D008002 3.2e-132 475.3 281 91.1
AL5G36370 Arabidopsis lyrata HOM05D006484 ORTHO05D008002 6.6e-130 467.6 279 89.6
Thhalv10010599m.g Eutrema salsugineum HOM05D006484 ORTHO05D008002 1.1e-129 466.8 282 88.7
CARHR165250 Cardamine hirsuta HOM05D006484 ORTHO05D008002 2.8e-128 462.2 281 87.9
AT3G55250 Arabidopsis thaliana HOM05D006484 ORTHO05D008002 8.9e-127 457.2 281 86.8
Carub.0005s2191 Capsella rubella HOM05D006484 ORTHO05D008002 1.1e-121 440.3 281 84.0
Aa31LG10G9850 Aethionema arabicum HOM05D006484 ORTHO05D008002 1.9e-116 422.9 294 76.9
THA.LOC104805398 Tarenaya hassleriana HOM05D006484 ORTHO05D008002 5.8e-110 401.4 283 75.6
BcaB01g00117 Brassica carinata HOM05D006484 ORTHO05D008002 1.4e-108 396.7 279 80.3
Duzib147G0204 Durio zibethinus HOM05D006484 ORTHO05D008002 4.3e-97 358.6 267 69.3
COL.COLO4_28946 Corchorus olitorius HOM05D006484 ORTHO05D008002 1.6e-96 356.7 272 66.9
Thecc.04G008700 Theobroma cacao HOM05D006484 ORTHO05D008002 1.5e-94 350.1 272 66.5
Hund05806 Selenicereus undatus HOM05D006484 ORTHO05D008002 3.4e-94 349.0 235 75.3
Manes.17G122200 Manihot esculenta HOM05D006484 ORTHO05D008002 1.7e-93 346.7 270 65.9
TWI56G0797 Tripterygium wilfordii HOM05D006484 ORTHO05D008002 2.2e-93 346.3 270 65.9
Gohir.D11G071200 Gossypium hirsutum HOM05D006484 ORTHO05D008002 3.8e-93 345.5 275 64.7
Gorai.007G076500 Gossypium raimondii HOM05D006484 ORTHO05D008002 3.8e-93 345.5 275 64.7
PGR142G1659 Punica granatum HOM05D006484 ORTHO05D008002 4.2e-92 342.0 265 69.4
Gohir.A11G067300 Gossypium hirsutum HOM05D006484 ORTHO05D008002 5.5e-92 341.7 275 64.0
Haze_14667 Corylus avellana HOM05D006484 ORTHO05D008002 9.3e-92 340.9 278 63.7
MD17G1035000 Malus domestica HOM05D006484 ORTHO05D008002 1.2e-91 340.5 267 65.2
Ciclev10016148m.g Citrus clementina HOM05D006484 ORTHO05D008002 2.1e-91 339.7 277 63.5
Prupe.3G283800 Prunus persica HOM05D006484 ORTHO05D008002 2.1e-91 339.7 251 66.9
CANSAT64G2071 Cannabis sativa HOM05D006484 ORTHO05D008002 7.9e-91 337.8 274 65.7
Cfa007430 Carpinus fangiana HOM05D006484 ORTHO05D008002 7.9e-91 337.8 232 69.8
FAN14G3872 Fragaria x ananassa HOM05D006484 ORTHO05D008002 7.9e-91 337.8 269 64.3
MBI16_g26453_MAGBIO Magnolia biondii HOM05D006484 ORTHO05D008002 1.8e-90 336.7 275 63.6
Nitab4.5_0005176g0030 Nicotiana tabacum HOM05D006484 ORTHO05D008002 1.8e-90 336.7 278 62.6
arahy.Tifrunner.gnm1.ann1.J6NIZK Arachis hypogaea HOM05D006484 ORTHO05D008002 2.3e-90 336.3 234 70.9
arahy.Tifrunner.gnm1.ann1.ND36BV Arachis hypogaea HOM05D006484 ORTHO05D008002 2.3e-90 336.3 234 70.9
FvH4_6g50620 Fragaria vesca HOM05D006484 ORTHO05D008002 2.3e-90 336.3 269 64.3
CiPaw.03G037700 Carya illinoinensis HOM05D006484 ORTHO05D008002 3.0e-90 335.9 279 63.8
FAN02G1518 Fragaria x ananassa HOM05D006484 ORTHO05D008002 3.0e-90 335.9 269 64.3
RcHm_v2.0_Chr2g0171411 Rosa chinensis HOM05D006484 ORTHO05D008002 3.0e-90 335.9 269 64.7
QL02p076682 Quercus lobata HOM05D006484 ORTHO05D008002 6.7e-90 334.7 253 66.4
Hma1.2p1_0802F.1_g220370 Hydrangea macrophylla HOM05D006484 ORTHO05D008002 8.7e-90 334.3 233 70.0
Nitab4.5_0003337g0080 Nicotiana tabacum HOM05D006484 ORTHO05D008002 1.5e-89 333.6 279 61.6
Aqoxy3G01007 Aquilegia oxysepala HOM05D006484 ORTHO05D008002 1.9e-89 333.2 265 64.2
Dinv33496 Davidia involucrata HOM05D006484 ORTHO05D008002 1.9e-89 333.2 245 66.9
SalBow7G4444 Salvia bowleyana HOM05D006484 ORTHO05D008002 2.5e-89 332.8 275 62.5
GSVIVG01032484001 Vitis vinifera HOM05D006484 ORTHO05D008002 4.3e-89 332.0 228 71.5
MELO3C009955.2 Cucumis melo HOM05D006484 ORTHO05D008002 1.3e-88 330.5 273 63.0
Rhsim08G0055200 Rhododendron simsii HOM05D006484 ORTHO05D008002 2.1e-88 329.7 265 62.3
TAR629G1796 Trochodendron aralioides HOM05D006484 ORTHO05D008002 2.1e-88 329.7 234 70.9
CSS0043741 Camellia sinensis var. sinensis HOM05D006484 ORTHO05D008002 6.3e-88 328.2 261 63.6
Potri.017G073000 Populus trichocarpa HOM05D006484 ORTHO05D008002 6.3e-88 328.2 234 67.5
SGA_v2.0_scaffold30G12470 Striga asiatica HOM05D006484 ORTHO05D008002 1.1e-87 327.4 236 68.2
FAN09G0334 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.4e-87 327.0 277 61.7
ClCG10G014230 Citrullus lanatus HOM05D006484 ORTHO05D008002 1.8e-87 326.6 234 68.8
CsaV3_3G042410 Cucumis sativus L. HOM05D006484 ORTHO05D008002 1.8e-87 326.6 274 62.8
Sed0007993 Sechium edule HOM05D006484 ORTHO05D008002 1.8e-87 326.6 268 63.8
MSTRG.15510 Avicennia marina HOM05D006484 ORTHO05D008002 2.4e-87 326.2 263 64.3
Migut.K01368 Erythranthe guttata HOM05D006484 ORTHO05D008002 2.4e-87 326.2 234 67.1
Eucgr.I01814 Eucalyptus grandis HOM05D006484 ORTHO05D008002 4.1e-87 325.5 266 63.2
Sopen02g031660 Solanum pennellii HOM05D006484 ORTHO05D008002 4.1e-87 325.5 274 62.8
Peaxi162Scf00129g00106 Petunia axillaris HOM05D006484 ORTHO05D008002 5.3e-87 325.1 239 66.9
Cc07_g02300 Coffea canephora HOM05D006484 ORTHO05D008002 6.9e-87 324.7 228 70.2
Sabra16G0230700 Salix brachista HOM05D006484 ORTHO05D008002 6.9e-87 324.7 280 60.7
unitig_88.g27777 Utricularia gibba HOM05D000190 ORTHO05D000113 9.0e-87 324.3 259 61.4
Solyc02g086890.3 Solanum lycopersicum HOM05D006484 ORTHO05D008002 1.5e-86 323.6 274 62.4
PGSC0003DMG401000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 5.9e-86 321.6 231 68.8
PGSC0003DMG402000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 5.9e-86 321.6 231 68.8
FAN05G1767 Fragaria x ananassa HOM05D006484 ORTHO05D008002 7.6e-86 321.2 303 57.4
Lj7A591T78 Lonicera japonica HOM05D006484 ORTHO05D008002 1.0e-85 320.9 234 68.4
Lsat_1_v5_gn_0_26201 Lactuca sativa HOM05D006484 ORTHO05D008002 1.7e-85 320.1 232 68.1
Lalb_Chr21g0319431 Lupinus albus HOM05D006484 ORTHO05D008002 1.7e-85 320.1 234 66.7
HanXRQChr15g0474541 Helianthus annuus HOM05D006484 ORTHO05D008002 2.2e-85 319.7 232 68.1
EL10Ac6g14629 Beta vulgaris HOM05D006484 ORTHO05D008002 1.1e-84 317.4 272 61.4
Glyma.13G169000 Glycine max HOM05D006484 ORTHO05D008002 4.2e-84 315.5 233 65.7
Glyma.19G009200 Glycine max HOM05D006484 ORTHO05D008002 4.2e-84 315.5 233 64.8
Lj2g0018435 Lotus japonicus HOM05D006484 ORTHO05D008002 3.6e-83 312.4 247 62.8
VMungo0464G2075 Vigna mungo HOM05D006484 ORTHO05D008002 6.1e-83 311.6 233 64.4
ECA246G1918 Erigeron canadensis HOM05D006484 ORTHO05D008002 1.3e-82 310.5 230 66.1
Ca_04198_v3 Cicer arietinum L. HOM05D006484 ORTHO05D008002 3.9e-82 308.9 235 66.0
Phvul.004G016700 Phaseolus vulgaris HOM05D006484 ORTHO05D008002 1.1e-81 307.4 233 63.9
PSO832G1464 Papaver somniferum HOM05D006484 ORTHO05D008002 4.3e-81 305.4 235 66.0
Ah.02g127510 Amaranthus hybridus HOM05D006484 ORTHO05D008002 7.4e-81 304.7 220 70.0
TPR.G2295 Trifolium pratense HOM05D006484 ORTHO05D008002 9.7e-81 304.3 233 64.4
PSO063G6163 Papaver somniferum HOM05D006484 ORTHO05D008002 1.3e-80 303.9 235 65.1
Psat1g058640 Pisum sativum HOM05D006484 ORTHO05D008002 8.2e-80 301.2 228 65.8
Sc10g0003790 Simmondsia chinensis HOM05D006484 ORTHO05D008002 1.2e-78 297.4 240 62.5
Medtr6g007180 Medicago truncatula HOM05D006484 ORTHO05D008002 1.0e-77 294.3 239 61.5
ATR0730G086 Amborella trichopoda HOM05D006484 ORTHO05D008002 2.7e-75 286.2 228 62.3
CDE05G1394 Ceratophyllum demersum HOM05D001719 ORTHO05D008883 5.1e-74 282.0 218 62.8
DCAR_021681 Daucus carota HOM05D006484 ORTHO05D008002 1.3e-72 277.3 300 51.7
BolC3t16636H Brassica oleracea HOM05D006484 ORTHO05D008002 4.8e-72 275.4 175 83.4
Os05g0526200 Oryza sativa ssp. japonica HOM05D006484 ORTHO05D008002 8.2e-72 274.6 266 55.6
Nn4g22800 Nelumbo nucifera HOM05D006484 ORTHO05D008002 4.1e-71 272.3 232 60.3
BolC7t43763H Brassica oleracea HOM05D006484 ORTHO05D008002 2.5e-68 263.1 195 73.8
HPP92_024318 Vanilla planifolia HOM05D006484 ORTHO05D008002 4.4e-65 252.3 243 55.6
Actinidia35740 Actinidia chinensis HOM05D006484 ORTHO05D008002 2.6e-62 243.0 181 63.5
Cpa.g.sc39.92 Carica papaya HOM05D006484 ORTHO05D008002 1.0e-58 231.1 174 69.0
AUR62007841 Chenopodium quinoa HOM05D006484 ORTHO05D008002 2.6e-57 226.5 235 54.5
vmacro18241 Vaccinium macrocarpon HOM05D006484 ORTHO05D008002 8.2e-56 221.5 275 47.3
Pp3c21_1380 Physcomitrium patens HOM05D006484 ORTHO05D008002 5.9e-46 188.7 208 46.6
AagrBONN_evm.TU.Sc2ySwM_344.2636 Anthoceros agrestis HOM05D006484 ORTHO05D008002 5.5e-44 182.2 206 45.1
AUR62003035 Chenopodium quinoa HOM05D006484 ORTHO05D008002 5.5e-44 182.2 205 51.2
Zm00001eb215070 Zea mays HOM05D006484 ORTHO05D008002 7.2e-44 181.8 162 56.2
Mapoly0095s0016 Marchantia polymorpha HOM05D006484 ORTHO05D008002 1.4e-42 177.6 240 40.4
SMO165G0092 Selaginella moellendorffii HOM05D006484 ORTHO05D008002 9.8e-41 171.4 198 46.0
BcaC06g34142 Brassica carinata HOM05D006484 ORTHO05D008002 2.4e-39 166.8 137 67.9
HPP92_024280 Vanilla planifolia HOM05D006484 ORTHO05D008002 5.9e-38 162.2 168 52.4
CBR_g163 Chara braunii HOM05D006484 ORTHO05D008002 3.8e-37 159.5 231 40.7
CAN.G473.120 Capsicum annuum HOM05D006484 ORTHO05D008002 2.2e-32 143.7 148 54.7
Atru.chr6.2293 Acer truncatum HOM05D006484 ORTHO05D008002 2.9e-32 143.3 87 73.6
CAN.G685.18 Capsicum annuum HOM05D006484 ORTHO05D008002 1.5e-28 131.0 91 70.3
MD09G1034600 Malus domestica HOM05D006484 ORTHO05D000001 2.9e-24 116.7 98 63.3
Atru.chr6.2294 Acer truncatum HOM05D006484 ORTHO05D008002 3.9e-21 106.3 84 66.7
arahy.Tifrunner.gnm1.ann1.QWBN9A Arachis hypogaea HOM05D006484 ORTHO05D008002 1.3e-16 91.3 59 71.2
TPR.G33278 Trifolium pratense HOM05D006484 ORTHO05D008002 7.3e-12 75.5 51 64.7
Cre03.g183400 Chlamydomonas reinhardtii HOM05D006484 ORTHO05D008002 1.4e-10 71.2 192 26.0
MD09G1034700 Malus domestica HOM05D006484 ORTHO05D008002 5.8e-09 65.9 76 51.3
arahy.Tifrunner.gnm1.ann1.5V94PQ Arachis hypogaea HOM05D005791 ORTHO05D008002 4.1e-07 59.7 34 79.4


User provided reference genes

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