Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.5e-116 422.2 222 100.0
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 3.7e-115 418.3 222 99.1
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 7.9e-110 400.6 222 95.5
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 7.9e-110 400.6 222 95.5
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 7.9e-110 400.6 222 95.5
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 2.1e-102 375.9 220 91.8
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 5.1e-101 371.3 220 90.5
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 8.7e-101 370.5 220 90.9
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 8.7e-101 370.5 220 90.9
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 1.1e-100 370.2 220 90.5
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.5e-100 369.8 221 90.5
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 4.3e-100 368.2 220 90.0
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.2e-99 365.9 220 90.0
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 2.8e-99 365.5 220 89.1
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 1.5e-97 359.8 220 88.2
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 5.0e-96 354.8 220 87.3
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 7.2e-95 350.9 200 90.5
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 4.2e-87 325.1 214 83.6
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 5.7e-84 314.7 183 92.9
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.3e-80 303.5 227 74.4
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.6e-78 296.6 210 79.5
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.4e-74 282.7 228 70.2
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 5.3e-74 281.6 180 85.6
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.3e-74 281.6 225 69.8
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 8.5e-72 274.2 230 66.1
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 4.2e-71 271.9 231 65.8
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 9.4e-71 270.8 238 64.3
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 9.4e-71 270.8 231 65.8
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.6e-70 270.0 230 65.2
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.6e-70 270.0 206 68.4
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.6e-70 270.0 229 65.1
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 2.1e-70 269.6 233 63.9
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 3.6e-70 268.9 232 64.2
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 3.6e-70 268.9 231 64.1
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 4.7e-70 268.5 230 65.7
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.0e-69 267.3 212 68.9
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 2.3e-69 266.2 207 68.1
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 3.0e-69 265.8 223 65.9
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 5.2e-69 265.0 231 62.8
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 6.8e-69 264.6 207 67.1
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 8.8e-69 264.2 216 66.2
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 8.8e-69 264.2 216 66.2
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 8.8e-69 264.2 220 65.5
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.2e-68 263.8 210 68.1
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 2.0e-68 263.1 207 66.7
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 2.6e-68 262.7 207 67.1
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.6e-68 262.7 208 67.3
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.6e-68 262.7 209 67.5
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.6e-68 262.7 208 67.3
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 3.4e-68 262.3 235 60.9
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 3.4e-68 262.3 199 69.8
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 3.4e-68 262.3 207 66.7
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 4.4e-68 261.9 202 68.8
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 4.4e-68 261.9 230 62.6
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.7e-68 261.5 212 67.5
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 7.5e-68 261.2 208 66.8
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 9.8e-68 260.8 209 67.0
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 9.8e-68 260.8 209 67.0
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 9.8e-68 260.8 214 66.8
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.3e-67 260.4 209 67.0
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.3e-67 260.4 212 67.5
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.7e-67 260.0 194 70.1
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 2.2e-67 259.6 211 65.9
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 2.2e-67 259.6 210 67.1
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 2.2e-67 259.6 212 66.5
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 2.2e-67 259.6 203 67.5
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.8e-67 259.2 208 65.9
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.8e-67 259.2 211 66.4
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.8e-67 259.2 211 66.4
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 2.8e-67 259.2 209 66.5
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.8e-67 259.2 204 68.6
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 2.8e-67 259.2 210 66.2
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 3.7e-67 258.8 198 70.2
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 4.8e-67 258.5 233 63.5
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 4.8e-67 258.5 215 64.7
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.3e-67 258.1 229 62.9
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.3e-67 258.1 229 62.9
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 8.3e-67 257.7 231 63.2
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.1e-66 257.3 211 64.9
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-66 257.3 229 62.4
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.1e-66 257.3 204 68.1
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.8e-66 256.5 229 62.4
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.8e-66 256.5 229 62.4
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.8e-66 256.5 213 65.3
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 2.4e-66 256.1 236 61.4
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 3.1e-66 255.8 198 69.7
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 5.4e-66 255.0 217 62.7
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.4e-66 255.0 230 63.0
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 7.0e-66 254.6 202 66.8
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 9.1e-66 254.2 204 66.7
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 1.2e-65 253.8 203 65.5
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.2e-65 253.8 229 61.6
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.6e-65 253.4 212 64.6
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 2.0e-65 253.1 203 66.0
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.0e-65 253.1 229 60.3
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 2.7e-65 252.7 210 66.2
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 2.7e-65 252.7 213 62.9
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 7.7e-65 251.1 215 63.7
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 7.7e-65 251.1 239 60.3
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 7.7e-65 251.1 210 64.3
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 7.7e-65 251.1 207 65.2
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.3e-64 250.4 212 62.3
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.7e-64 250.0 197 66.0
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 2.2e-64 249.6 222 62.2
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 8.5e-64 247.7 236 60.2
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 8.5e-64 247.7 212 62.3
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.1e-63 247.3 232 59.9
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 4.2e-63 245.4 225 60.0
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 9.5e-63 244.2 225 59.6
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.1e-62 243.0 194 64.9
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.1e-62 243.0 199 65.3
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 6.1e-62 241.5 199 65.3
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 8.0e-62 241.1 210 61.4
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.4e-61 240.4 230 57.8
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.3e-61 239.6 199 66.3
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 2.3e-61 239.6 219 61.2
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 5.2e-61 238.4 219 60.7
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 2.0e-60 236.5 216 58.3
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 4.9e-59 231.9 194 60.3
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 1.1e-58 230.7 194 59.8
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 2.4e-58 229.6 203 59.1
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 2.7e-57 226.1 205 62.4
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.0e-56 224.2 205 62.0
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 8.0e-54 214.5 196 59.7
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 1.4e-53 213.8 193 62.2
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.4e-50 203.0 204 52.9
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 5.4e-50 201.8 148 68.9
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.6e-46 190.3 232 53.4
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 2.1e-46 189.9 173 56.6
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.0e-44 183.3 216 53.2
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 7.3e-39 164.9 125 66.4
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 3.6e-38 162.5 126 64.3
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 7.1e-34 148.3 140 60.7
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 9.2e-34 147.9 102 70.6
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 1.2e-33 147.5 114 64.9
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 2.1e-33 146.7 222 44.6
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 2.3e-32 143.3 125 63.2
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 3.3e-31 139.4 107 65.4
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 2.4e-13 80.1 90 54.4
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.3e-11 74.3 62 59.7


User provided reference genes

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