Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 2519.2 1358 100.0
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 2475.3 1358 97.9
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 2473.7 1358 97.8
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 2473.7 1358 97.8
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 2471.4 1353 97.6
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 2358.6 1363 92.8
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 2348.2 1327 93.7
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 2347.4 1395 91.0
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 2347.4 1395 91.0
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 2315.8 1265 94.8
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 2301.2 1324 92.2
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 2284.2 1359 89.8
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 2262.6 1442 86.1
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 2262.6 1358 88.4
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 2254.6 1278 91.6
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 2228.0 1359 88.3
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 2116.7 1439 79.8
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 2065.8 1263 84.3
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 1993.4 1219 87.6
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1836.6 1283 73.5
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1815.0 1270 73.4
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1814.7 1264 73.1
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1814.7 1365 71.1
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1807.0 1289 72.1
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1801.2 1266 73.3
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1801.2 1273 73.4
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1799.3 1273 73.6
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1798.5 1286 73.3
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1794.2 1275 74.1
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1792.7 1274 72.3
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1790.0 1295 71.6
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1788.9 1290 72.1
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1787.3 1274 72.8
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1779.2 1286 72.5
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1778.8 1358 69.0
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 1777.3 1386 67.3
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1776.1 1270 72.0
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1774.6 1273 72.0
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1771.5 1362 68.4
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1770.0 1275 72.0
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1765.4 1274 71.2
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1751.1 1274 71.0
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 1748.8 1288 69.6
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1746.9 1269 71.5
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1743.8 1209 73.9
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1740.3 1274 70.4
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1738.8 1385 65.7
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 1736.5 1282 70.0
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 1731.5 1263 70.2
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1731.5 1275 71.4
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1725.3 1265 70.1
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1724.5 1264 70.1
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1719.5 1262 70.4
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1719.1 1294 70.7
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1716.8 1276 69.8
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1716.4 1276 69.7
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1715.3 1291 69.7
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1709.5 1274 69.6
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1708.0 1274 69.7
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1706.8 1285 69.1
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 1705.6 1274 70.2
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 1699.5 1274 70.2
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1696.4 1250 69.7
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1695.6 1351 66.5
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1694.1 1276 69.2
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 1690.2 1352 67.6
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1689.5 1273 69.5
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1682.5 1272 69.7
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1679.5 1291 67.8
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 1678.3 1258 68.3
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 1677.1 1281 69.1
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1676.0 1266 68.6
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1675.6 1266 68.3
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1675.2 1303 66.6
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1674.4 1290 69.4
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 1671.0 1271 69.2
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 1668.3 1287 66.6
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1667.1 1296 68.7
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1660.6 1200 77.8
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 1657.1 1273 68.3
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1653.6 1351 64.8
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 1649.0 1287 67.5
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1628.6 1272 67.2
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 0.0e+00 1627.1 1381 64.2
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 1618.2 1414 61.9
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1591.6 1287 66.0
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1588.5 1279 66.6
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1587.8 1093 75.2
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1585.9 1278 66.0
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 0.0e+00 1568.5 1269 64.7
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1561.2 1274 64.7
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1552.3 1280 64.2
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1521.9 1058 74.5
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 0.0e+00 1516.9 1297 61.8
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1481.5 1274 62.7
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1442.9 1046 72.4
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1442.2 1134 66.4
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 0.0e+00 1432.5 1161 64.4
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1427.9 1094 68.4
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 0.0e+00 1397.1 1304 56.7
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 0.0e+00 1327.8 1361 55.3
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 0.0e+00 1322.8 1076 66.1
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1156.4 830 71.6
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 0.0e+00 1127.5 1262 49.2
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 0.0e+00 1077.4 1272 46.5
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 3.2e-310 1068.9 1263 48.2
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 1.4e-302 1043.5 1234 47.2
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 1.2e-296 1023.8 1266 45.3
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 1.9e-283 979.9 721 69.8
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 2.5e-251 873.2 1250 42.0
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 1.2e-240 837.8 802 59.2
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.1e-173 614.4 612 56.2
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 8.9e-172 609.0 1300 33.2
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 3.3e-166 590.5 1251 30.5
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 6.2e-157 559.7 535 59.6
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 3.3e-118 431.0 358 62.6
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 2.5e-105 388.3 350 62.0
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 3.1e-92 344.7 1114 25.6
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 4.0e-79 301.2 1102 24.3
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 1.3e-61 243.0 1201 24.1
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 2.3e-58 232.3 213 60.1
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 2.3e-58 232.3 213 60.1
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.4e-53 214.2 207 54.6
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 1.1e-52 213.4 180 61.1
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.7e-51 208.8 214 52.8
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.7e-50 203.8 215 51.2
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.4e-46 191.4 177 57.1
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 5.8e-46 191.0 222 43.7
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 1.7e-45 189.5 161 60.2
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 6.4e-45 187.6 181 58.6
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.0e-42 180.3 162 60.5
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.9e-42 178.3 162 59.9
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 1.6e-35 156.4 137 64.2
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.9e-33 149.4 135 60.0
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.7e-27 129.0 122 57.4
MBI15_g38850_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.3e-26 126.7 142 54.9
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 1.8e-26 126.3 128 53.9
MBI13_g46003_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.6e-24 119.8 106 56.6
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 8.4e-21 107.5 88 62.5
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.4e-20 106.7 98 60.2
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.2e-20 105.1 71 73.2
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.5e-20 104.8 96 61.5
HanXRQChr05g0161121 Helianthus annuus HOM05D004602 ORTHO05D005906 2.1e-19 102.8 90 56.7
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 3.5e-19 102.1 61 78.7
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 2.5e-17 95.9 77 62.3
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 2.5e-17 95.9 77 62.3
PGSC0003DMG400020858 Solanum tuberosum HOM05D004602 ORTHO05D005906 5.7e-17 94.7 108 49.1
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 1.6e-16 93.2 97 55.7
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 3.7e-16 92.0 67 65.7
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 4.1e-15 88.6 57 78.9
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.1e-15 88.6 64 68.8
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.9e-15 87.8 68 63.2
Rhsim06G0100000 Rhododendron simsii HOM05D004602 ORTHO05D005906 2.0e-14 86.3 63 71.4
PGSC0003DMG400020862 Solanum tuberosum HOM05D004602 ORTHO05D005906 2.6e-14 85.9 97 49.5
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 1.4e-12 80.1 61 67.2
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 5.7e-09 68.2 64 56.2
BcaB02g08331 Brassica carinata HOM05D004602 ORTHO05D014120 6.9e-07 61.2 33 87.9
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 6.9e-07 61.2 160 26.2
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 9.1e-07 60.8 175 26.3
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 1.5e-06 60.1 135 27.4
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 1.5e-06 60.1 135 27.4
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 4.5e-06 58.5 158 25.9
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 5.9e-06 58.2 81 49.4
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 5.9e-06 58.2 155 26.5
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 7.7e-06 57.8 157 24.2
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 7.7e-06 57.8 135 25.9


User provided reference genes

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