Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p03610 Brassica napus HOM05D005060 ORTHO05D005975 2.8e-60 235.3 144 100.0
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 3.4e-53 211.8 144 89.6
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 3.4e-53 211.8 144 89.6
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 3.4e-53 211.8 144 89.6
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 6.4e-52 207.6 144 88.2
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 6.4e-52 207.6 144 88.2
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 2.4e-51 205.7 147 87.1
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 2.4e-51 205.7 147 87.1
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 2.4e-51 205.7 147 87.1
BcaC07g40108 Brassica carinata HOM05D005060 ORTHO05D005975 8.9e-46 187.2 144 84.0
Sp5g05680 Schrenkiella parvula HOM05D005060 ORTHO05D005975 1.2e-45 186.8 151 79.5
BraA07t29972Z Brassica rapa HOM05D000531 ORTHO05D001630 1.1e-43 180.3 148 79.1
BolC6t37551H Brassica oleracea HOM05D005060 ORTHO05D005975 4.1e-43 178.3 144 81.2
C06p23830 Brassica napus HOM05D005060 ORTHO05D005975 5.4e-43 177.9 144 81.2
BcaB02g08343 Brassica carinata HOM05D005060 ORTHO05D005975 9.2e-43 177.2 144 77.1
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 3.5e-42 175.3 145 78.6
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 1.7e-41 172.9 119 81.5
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 1.6e-39 166.4 152 73.0
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 8.1e-39 164.1 151 72.2
Carub.0005s2365 Capsella rubella HOM05D005060 ORTHO05D005975 5.2e-38 161.4 153 74.5
AL5G38310 Arabidopsis lyrata HOM05D005060 ORTHO05D005975 1.2e-37 160.2 153 75.2
Thhalv10006294m.g Eutrema salsugineum HOM05D005060 ORTHO05D005975 2.6e-37 159.1 151 74.8
A07p12270 Brassica napus HOM05D006945 ORTHO05D005549 1.1e-24 117.1 86 79.1
A07p12290 Brassica napus HOM05D006945 ORTHO05D005549 1.1e-24 117.1 86 79.1
BraA07t29011Z Brassica rapa HOM05D006945 ORTHO05D005549 1.1e-24 117.1 86 79.1
BcaB03g14272 Brassica carinata HOM05D005060 ORTHO05D005975 2.0e-21 106.3 133 56.4
Aa31LG10G11770 Aethionema arabicum HOM05D005060 ORTHO05D005975 3.1e-14 82.4 156 57.7
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 9.0e-14 80.9 151 45.7
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 9.0e-14 80.9 137 40.9
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 2.6e-13 79.3 150 46.7
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 2.6e-13 79.3 150 46.7
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 5.8e-13 78.2 151 47.7
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 1.3e-12 77.0 148 46.6
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.7e-12 76.6 150 46.0
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 2.2e-12 76.3 156 41.0
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 3.8e-12 75.5 151 44.4
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 6.4e-12 74.7 154 42.9
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 6.4e-12 74.7 127 42.5
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 8.4e-12 74.3 144 41.7
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 1.1e-11 73.9 155 47.7
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 1.1e-11 73.9 118 50.8
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 1.9e-11 73.2 152 41.4
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 4.2e-11 72.0 156 44.2
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 4.2e-11 72.0 160 40.6
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 4.2e-11 72.0 151 48.3
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 5.4e-11 71.6 154 40.3
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 9.3e-11 70.9 165 42.4
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 9.3e-11 70.9 162 42.6
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 9.3e-11 70.9 126 42.9
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 9.3e-11 70.9 153 43.1
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 1.6e-10 70.1 153 45.1
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 1.6e-10 70.1 119 47.9
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 1.6e-10 70.1 95 60.0
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 2.1e-10 69.7 148 39.2
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 2.1e-10 69.7 155 46.5
THA.LOC104803240 Tarenaya hassleriana HOM05D005060 ORTHO05D005975 2.7e-10 69.3 153 51.6
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 4.6e-10 68.6 90 65.6
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 7.9e-10 67.8 166 44.0
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.0e-09 67.4 152 44.7
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 1.3e-09 67.0 120 47.5
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.8e-09 66.6 142 44.4
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 3.0e-09 65.9 146 38.4
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 5.1e-09 65.1 142 45.8
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 5.1e-09 65.1 142 43.0
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 5.1e-09 65.1 142 45.8
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 5.1e-09 65.1 143 44.1
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 6.7e-09 64.7 91 59.3
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 8.7e-09 64.3 146 45.9
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 1.5e-08 63.5 144 48.6
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 4.3e-08 62.0 149 38.9
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 4.3e-08 62.0 150 44.0
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 4.3e-08 62.0 154 47.4
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 5.6e-08 61.6 60 71.7
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 1.6e-07 60.1 155 38.1
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 4.8e-07 58.5 149 43.0
Glyma.03G120300 Glycine max HOM05D005060 ORTHO05D005975 1.1e-06 57.4 162 45.1
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 1.1e-06 57.4 152 42.8
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.1e-06 57.4 151 43.0
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 1.4e-06 57.0 151 36.4
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 1.4e-06 57.0 148 41.2


User provided reference genes

Program Settings