Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p03220 Brassica napus HOM05D004475 ORTHO05D005235 5.8e-62 240.7 123 100.0
BraA04t16044Z Brassica rapa HOM05D004475 ORTHO05D005235 2.5e-49 198.7 125 88.0
BolC8t50880H Brassica oleracea HOM05D004475 ORTHO05D005235 1.9e-41 172.6 141 71.6
BcaC07g40061 Brassica carinata HOM05D004475 ORTHO05D005235 5.6e-41 171.0 117 82.1
Sp5g05320 Schrenkiella parvula HOM05D004475 ORTHO05D005235 7.4e-41 170.6 117 82.1
Thhalv10006224m.g Eutrema salsugineum HOM05D004475 ORTHO05D005235 9.6e-41 170.2 117 82.1
C08p32680 Brassica napus HOM05D004475 ORTHO05D005235 4.8e-40 167.9 119 82.4
Carub.0001s3807 Capsella rubella HOM05D004475 ORTHO05D005235 4.8e-40 167.9 117 81.2
BcaC08g44832 Brassica carinata HOM05D004475 ORTHO05D005235 6.2e-40 167.5 117 80.3
A09p50200 Brassica napus HOM05D004475 ORTHO05D005235 1.1e-39 166.8 119 81.5
BraA09t40470Z Brassica rapa HOM05D004475 ORTHO05D005235 1.1e-39 166.8 119 81.5
A07p23330 Brassica napus HOM05D004475 ORTHO05D005235 1.8e-39 166.0 117 79.5
C06p24380 Brassica napus HOM05D004475 ORTHO05D005235 2.4e-39 165.6 117 79.5
BraA07t29998Z Brassica rapa HOM05D004475 ORTHO05D005235 3.1e-39 165.2 117 79.5
BcaC02g09925 Brassica carinata HOM05D004475 ORTHO05D005235 4.0e-39 164.9 117 80.3
C04p35100 Brassica napus HOM05D004475 ORTHO05D005235 4.0e-39 164.9 117 80.3
BolC4t25066H Brassica oleracea HOM05D004475 ORTHO05D005235 4.0e-39 164.9 117 80.3
AL5G38770 Arabidopsis lyrata HOM05D004475 ORTHO05D005235 1.5e-38 162.9 118 79.7
AT3G57280 Arabidopsis thaliana HOM05D004475 ORTHO05D005235 3.4e-38 161.8 118 78.8
BolC6t37586H Brassica oleracea HOM05D004475 ORTHO05D005235 1.3e-37 159.8 117 77.8
Carub.0005s2413 Capsella rubella HOM05D004475 ORTHO05D005235 2.9e-37 158.7 114 78.1
CARHR167480 Cardamine hirsuta HOM05D004475 ORTHO05D005235 7.1e-36 154.1 117 75.2
BcaC02g09926 Brassica carinata HOM05D004475 ORTHO05D005235 1.2e-35 153.3 113 77.9
THA.LOC104824427 Tarenaya hassleriana HOM05D004475 ORTHO05D005235 5.1e-34 147.9 119 70.6
Aa31LG10G12150 Aethionema arabicum HOM05D004475 ORTHO05D005235 5.6e-33 144.4 118 68.6
QL07p004070 Quercus lobata HOM05D004475 ORTHO05D005235 5.3e-31 137.9 113 67.3
Cfa016767 Carpinus fangiana HOM05D004475 ORTHO05D005235 6.9e-31 137.5 115 67.0
Potri.003G094300 Populus trichocarpa HOM05D004475 ORTHO05D005235 6.9e-31 137.5 117 65.0
QL02p076199 Quercus lobata HOM05D004475 ORTHO05D005235 6.9e-31 137.5 114 66.7
QL07p004140 Quercus lobata HOM05D004475 ORTHO05D005235 1.2e-30 136.7 115 66.1
Haze_19778 Corylus avellana HOM05D004475 ORTHO05D005235 2.0e-30 136.0 117 65.0
CANSAT80G2630 Cannabis sativa HOM05D004475 ORTHO05D005235 3.4e-30 135.2 115 63.5
Prupe.2G152500 Prunus persica HOM05D004475 ORTHO05D005235 3.4e-30 135.2 115 66.1
Potri.001G139800 Populus trichocarpa HOM05D004475 ORTHO05D005235 1.0e-29 133.7 114 64.9
Eucgr.A02304 Eucalyptus grandis HOM05D004475 ORTHO05D005235 1.3e-29 133.3 112 67.0
SGA_v2.0_scaffold69G23128 Striga asiatica HOM05D004475 ORTHO05D005235 1.3e-29 133.3 140 57.9
Rhsim03G0029800 Rhododendron simsii HOM05D004475 ORTHO05D005235 1.7e-29 132.9 115 63.5
vmacro21959 Vaccinium macrocarpon HOM05D004475 ORTHO05D005235 2.2e-29 132.5 115 62.6
Sabra03G0063400 Salix brachista HOM05D004475 ORTHO05D005235 2.9e-29 132.1 118 61.9
CiPaw.10G036200 Carya illinoinensis HOM05D004475 ORTHO05D005235 6.5e-29 131.0 112 65.2
GSVIVG01005040001 Vitis vinifera HOM05D004475 ORTHO05D005235 6.5e-29 131.0 109 66.1
Manes.09G010600 Manihot esculenta HOM05D004475 ORTHO05D005235 8.4e-29 130.6 117 63.2
CSS0035330 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 1.1e-28 130.2 112 65.2
Lj1A1123G21 Lonicera japonica HOM05D004475 ORTHO05D005235 1.1e-28 130.2 113 64.6
CSS0043412 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 1.4e-28 129.8 115 64.3
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 2.5e-28 129.0 116 60.3
PGSC0003DMG400008171 Solanum tuberosum HOM05D004475 ORTHO05D005235 3.2e-28 128.6 117 60.7
Migut.J01712 Erythranthe guttata HOM05D004475 ORTHO05D005235 4.2e-28 128.3 115 62.6
Actinidia38137 Actinidia chinensis HOM05D004475 ORTHO05D005235 5.5e-28 127.9 113 62.8
Nitab4.5_0000082g0290 Nicotiana tabacum HOM05D004475 ORTHO05D005235 7.1e-28 127.5 115 62.6
Lj2A388T27 Lonicera japonica HOM05D004475 ORTHO05D005235 9.3e-28 127.1 117 62.4
Nitab4.5_0010656g0010 Nicotiana tabacum HOM05D004475 ORTHO05D005235 9.3e-28 127.1 115 61.7
Thecc.04G085100 Theobroma cacao HOM05D004475 ORTHO05D005235 9.3e-28 127.1 113 63.7
COL.COLO4_31106 Corchorus olitorius HOM05D004475 ORTHO05D005235 1.2e-27 126.7 113 62.8
Lj1g0003764 Lotus japonicus HOM05D004475 ORTHO05D005235 1.2e-27 126.7 115 59.1
Solyc10g079260.2 Solanum lycopersicum HOM05D004475 ORTHO05D005235 1.2e-27 126.7 117 59.8
CAN.G641.30 Capsicum annuum HOM05D004475 ORTHO05D005235 3.5e-27 125.2 117 59.0
Peaxi162Scf00002g00359 Petunia axillaris HOM05D004475 ORTHO05D005235 3.5e-27 125.2 113 61.1
FAN10G0874 Fragaria x ananassa HOM05D004475 ORTHO05D005235 4.6e-27 124.8 113 60.2
FAN06G2315 Fragaria x ananassa HOM05D004475 ORTHO05D005235 7.9e-27 124.0 113 59.3
FAN06G2651 Fragaria x ananassa HOM05D004475 ORTHO05D005235 7.9e-27 124.0 113 59.3
Glyma.19G135000 Glycine max HOM05D004475 ORTHO05D005235 1.0e-26 123.6 113 59.3
Phvul.001G128700 Phaseolus vulgaris HOM05D004475 ORTHO05D005235 1.0e-26 123.6 115 58.3
Lalb_Chr01g0017241 Lupinus albus HOM05D004475 ORTHO05D005235 1.3e-26 123.2 115 59.1
RcHm_v2.0_Chr1g0351831 Rosa chinensis HOM05D004475 ORTHO05D005235 1.3e-26 123.2 113 58.4
Ca_22428_v3 Cicer arietinum L. HOM05D004475 ORTHO05D005235 1.8e-26 122.9 115 58.3
ClCG04G003840 Citrullus lanatus HOM05D004475 ORTHO05D005235 1.8e-26 122.9 113 62.8
FAN01G1920 Fragaria x ananassa HOM05D004475 ORTHO05D005235 1.8e-26 122.9 115 57.4
SalBow6G6503 Salvia bowleyana HOM05D004475 ORTHO05D005235 1.8e-26 122.9 115 60.0
arahy.Tifrunner.gnm1.ann1.AU6CR8 Arachis hypogaea HOM05D004475 ORTHO05D005235 3.0e-26 122.1 115 56.5
arahy.Tifrunner.gnm1.ann1.Y19QZX Arachis hypogaea HOM05D004475 ORTHO05D005235 3.0e-26 122.1 115 56.5
FvH4_7g12800 Fragaria vesca HOM05D004475 ORTHO05D005235 3.0e-26 122.1 113 58.4
Medtr7g090890 Medicago truncatula HOM05D004475 ORTHO05D005235 3.9e-26 121.7 113 59.3
CAN.G1237.9 Capsicum annuum HOM05D004475 ORTHO05D005235 5.1e-26 121.3 112 58.9
MBI05_g34359_MAGBIO Magnolia biondii HOM05D004475 ORTHO05D005235 5.1e-26 121.3 114 59.6
PSO541G2072 Papaver somniferum HOM05D004475 ORTHO05D005235 5.1e-26 121.3 115 58.3
PSO675G0454 Papaver somniferum HOM05D004475 ORTHO05D005235 5.1e-26 121.3 117 59.0
Peaxi162Scf00130g00932 Petunia axillaris HOM05D004475 ORTHO05D005235 6.7e-26 120.9 113 58.4
CsaV3_4G027790 Cucumis sativus L. HOM05D004475 ORTHO05D005235 8.7e-26 120.6 113 60.2
ATR0749G001 Amborella trichopoda HOM05D004475 ORTHO05D005235 1.1e-25 120.2 118 55.9
PGSC0003DMG400012719 Solanum tuberosum HOM05D004475 ORTHO05D005235 1.1e-25 120.2 113 59.3
MELO3C026314.2 Cucumis melo HOM05D004475 ORTHO05D005235 1.5e-25 119.8 113 60.2
Glyma.03G133200 Glycine max HOM05D004475 ORTHO05D005235 1.5e-25 119.8 113 58.4
Oeu008174.1 Olea europaea HOM05D004475 ORTHO05D005235 1.5e-25 119.8 117 60.7
Sabra01G0108900 Salix brachista HOM05D004475 ORTHO05D005235 1.9e-25 119.4 133 52.6
SalBow1G0186 Salvia bowleyana HOM05D004475 ORTHO05D005235 1.9e-25 119.4 121 57.9
DCAR_013617 Daucus carota HOM05D004475 ORTHO05D005235 2.5e-25 119.0 111 57.7
HanXRQChr01g0008311 Helianthus annuus HOM05D004475 ORTHO05D005235 2.5e-25 119.0 115 60.0
Nitab4.5_0000826g0170 Nicotiana tabacum HOM05D004475 ORTHO05D005235 5.7e-25 117.9 112 57.1
Aqoxy5G02252 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 7.4e-25 117.5 115 57.4
arahy.Tifrunner.gnm1.ann1.QEH0EE Arachis hypogaea HOM05D004475 ORTHO05D005235 7.4e-25 117.5 115 53.9
HanXRQChr08g0209421 Helianthus annuus HOM05D004475 ORTHO05D005235 1.3e-24 116.7 114 59.6
Solyc04g016440.4 Solanum lycopersicum HOM05D004475 ORTHO05D005235 1.6e-24 116.3 113 57.5
Dinv18682 Davidia involucrata HOM05D004475 ORTHO05D005235 2.2e-24 115.9 115 59.1
Sopen04g008540 Solanum pennellii HOM05D004475 ORTHO05D005235 2.2e-24 115.9 113 57.5
Lsat_1_v5_gn_5_161180 Lactuca sativa HOM05D004475 ORTHO05D005235 4.8e-24 114.8 115 57.4
Nn7g36424 Nelumbo nucifera HOM05D004475 ORTHO05D005235 4.8e-24 114.8 115 57.4
TAR369G1128 Trochodendron aralioides HOM05D004475 ORTHO05D005235 4.8e-24 114.8 115 59.1
TPR.G32720 Trifolium pratense HOM05D004475 ORTHO05D005235 3.1e-23 112.1 113 56.6
MSTRG.6404 Avicennia marina HOM05D004475 ORTHO05D005235 5.3e-23 111.3 113 59.3
Aqoxy1G03236 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 9.0e-23 110.5 118 55.9
Ah.04g151370 Amaranthus hybridus HOM05D004475 ORTHO05D005235 1.2e-22 110.2 108 54.6
Dinv39670 Davidia involucrata HOM05D004475 ORTHO05D005235 1.5e-22 109.8 113 58.4
HanXRQChr10g0298201 Helianthus annuus HOM05D004475 ORTHO05D005235 4.5e-22 108.2 115 54.8
ECA240G3656 Erigeron canadensis HOM05D004475 ORTHO05D005235 1.3e-21 106.7 114 54.4
MSTRG.10806 Avicennia marina HOM05D004475 ORTHO05D005235 2.5e-20 102.4 102 60.8
Cpa.g.sc182.27 Carica papaya HOM05D004475 ORTHO05D005235 5.5e-20 101.3 117 54.7
unitig_26.g9059 Utricularia gibba HOM05D004475 ORTHO05D005235 9.3e-20 100.5 113 53.1
TWI53G0253 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 4.6e-19 98.2 72 70.8
Cc06_g18210 Coffea canephora HOM05D004475 ORTHO05D005235 1.4e-18 96.7 103 53.4
SHI12342 Sapria himalayana HOM05D004475 ORTHO05D005235 1.8e-18 96.3 111 51.4
Hund24650 Selenicereus undatus HOM05D004475 ORTHO05D005235 3.0e-18 95.5 113 49.6
Oeu023134.1 Olea europaea HOM05D004475 ORTHO05D005235 5.1e-18 94.7 94 59.6
Atru.chr1.1194 Acer truncatum HOM05D004475 ORTHO05D005235 6.7e-18 94.4 113 51.3
Actinidia17673 Actinidia chinensis HOM05D004475 ORTHO05D005235 8.8e-18 94.0 56 78.6
TWI74G0419 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 8.8e-18 94.0 113 54.0
AUR62026115 Chenopodium quinoa HOM05D004475 ORTHO05D005235 1.1e-17 93.6 112 51.8
VMungo1383G1580 Vigna mungo HOM05D004475 ORTHO05D005235 1.1e-17 93.6 115 49.6
AUR62024523 Chenopodium quinoa HOM05D004475 ORTHO05D005235 1.5e-17 93.2 112 51.8
PGR004G0119 Punica granatum HOM05D004475 ORTHO05D005235 1.5e-17 93.2 112 50.9
TAR623G0096 Trochodendron aralioides HOM05D004475 ORTHO05D005235 3.3e-17 92.0 61 75.4
TWI77G0736 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 7.4e-17 90.9 121 48.8
SGA_v2.0_scaffold105G30365 Striga asiatica HOM05D004475 ORTHO05D005235 9.7e-17 90.5 72 66.7
Ciclev10005778m.g Citrus clementina HOM05D004475 ORTHO05D005235 1.3e-16 90.1 97 59.8
Gohir.A02G105902 Gossypium hirsutum HOM05D004475 ORTHO05D005235 3.7e-16 88.6 71 66.2
Duzib128G1477 Durio zibethinus HOM05D004475 ORTHO05D005235 2.4e-15 85.9 72 63.9
Zm00001eb424650 Zea mays HOM05D004475 ORTHO05D005235 6.9e-15 84.3 111 49.5
EL10Ac3g07152 Beta vulgaris HOM05D004475 ORTHO05D005235 5.9e-14 81.3 92 53.3
arahy.Tifrunner.gnm1.ann1.65IVB9 Arachis hypogaea HOM05D004475 ORTHO05D005235 7.7e-14 80.9 78 50.0
Duzib093G1491 Durio zibethinus HOM05D004475 ORTHO05D005235 7.7e-14 80.9 70 62.9
Pp3c21_18160 Physcomitrium patens HOM05D004956 ORTHO05D005235 7.7e-14 80.9 115 46.1
Mapoly0006s0095 Marchantia polymorpha HOM05D004956 ORTHO05D006284 1.0e-13 80.5 116 43.1
Migut.K00106 Erythranthe guttata HOM05D004475 ORTHO05D005235 1.3e-13 80.1 115 45.2
Gorai.003G086800 Gossypium raimondii HOM05D004475 ORTHO05D005235 1.3e-13 80.1 65 66.2
ECA247G2236 Erigeron canadensis HOM05D004475 ORTHO05D005235 2.9e-13 79.0 98 50.0
HPP92_017986 Vanilla planifolia HOM05D004475 ORTHO05D005235 2.9e-13 79.0 115 44.3
Sopen10g029910 Solanum pennellii HOM05D004475 ORTHO05D005235 3.8e-13 78.6 79 55.7
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.0e-13 78.2 111 46.8
Os06g0301100 Oryza sativa ssp. japonica HOM05D004475 ORTHO05D005235 1.1e-12 77.0 102 47.1
Pp3c18_6510 Physcomitrium patens HOM05D004956 ORTHO05D006284 1.4e-12 76.6 113 45.1
Gohir.D03G073000 Gossypium hirsutum HOM05D004475 ORTHO05D005235 1.9e-12 76.3 65 64.6
Thecc.05G146400 Theobroma cacao HOM05D004475 ORTHO05D005235 4.2e-12 75.1 94 51.1
Sed0026196 Sechium edule HOM05D004475 ORTHO05D005235 7.2e-12 74.3 82 53.7
Os04g0470300 Oryza sativa ssp. japonica HOM05D004475 ORTHO05D005235 2.1e-11 72.8 104 49.0
AagrBONN_evm.TU.Sc2ySwM_362.797 Anthoceros agrestis HOM05D004956 ORTHO05D006284 3.6e-11 72.0 110 42.7
SMO285G0004 Selaginella moellendorffii HOM05D004956 ORTHO05D005235 3.0e-10 68.9 109 36.7
HPP92_026704 Vanilla planifolia HOM05D004475 ORTHO05D005235 3.3e-09 65.5 105 41.9
Pp3c19_13340 Physcomitrium patens HOM05D004956 ORTHO05D006284 4.4e-09 65.1 106 40.6
Zm00001eb317650 Zea mays HOM05D004475 ORTHO05D005235 1.3e-08 63.5 57 57.9
Zm00001eb379540 Zea mays HOM05D004475 ORTHO05D005235 1.3e-08 63.5 57 57.9
Zm00001eb144750 Zea mays HOM05D000228 ORTHO05D015695 8.2e-08 60.8 59 54.2
Zm00001eb301150 Zea mays HOM05D004475 ORTHO05D005235 1.8e-07 59.7 97 41.2
CSS0012266 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 2.4e-07 59.3 44 65.9
CBR_g47126 Chara braunii HOM05D004956 ORTHO05D006284 2.4e-07 59.3 117 35.9
Psat0s5127g0040 Pisum sativum HOM05D004475 ORTHO05D005235 4.1e-07 58.5 29 86.2
SEGI_26247 Sequoiadendron giganteum HOM05D004475 ORTHO05D005235 5.3e-07 58.2 121 35.5
Zm00001eb409360 Zea mays HOM05D004475 ORTHO05D005235 2.0e-06 56.2 56 55.4
CDE02G2660 Ceratophyllum demersum HOM05D004475 ORTHO05D005235 3.4e-06 55.5 111 36.0
Psat3g074880 Pisum sativum HOM05D004475 ORTHO05D005235 4.5e-06 55.1 66 51.5


User provided reference genes

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