Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 7.5e-92 340.5 171 100.0
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 7.5e-92 340.5 171 100.0
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.5e-87 326.2 164 98.8
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.5e-87 326.2 164 98.8
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 1.9e-87 325.9 169 96.4
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 9.4e-87 323.6 164 98.2
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.0e-84 315.8 171 92.4
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 5.7e-84 314.3 171 91.8
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.1e-82 310.1 171 90.6
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 5.9e-81 304.3 172 89.0
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 7.7e-81 303.9 171 87.1
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.0e-80 303.5 171 88.3
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.3e-80 303.1 171 88.9
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.3e-80 302.4 171 87.7
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 2.9e-80 302.0 171 87.7
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 3.8e-80 301.6 171 87.1
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.1e-79 300.1 171 86.5
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.1e-79 300.1 171 86.5
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.1e-79 300.1 171 87.1
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 1.9e-79 299.3 171 86.0
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 2.5e-79 298.9 171 86.5
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 5.5e-79 297.7 171 86.5
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 1.6e-78 296.2 171 85.4
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 2.0e-76 289.3 171 84.2
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 8.6e-72 273.9 171 75.4
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 8.6e-72 273.9 171 77.8
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 6.1e-70 267.7 172 76.7
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 4.0e-69 265.0 171 76.0
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 5.2e-69 264.6 172 76.7
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 5.2e-69 264.6 172 75.6
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 5.2e-69 264.6 175 74.9
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 8.9e-69 263.8 172 75.6
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.2e-68 263.5 175 74.3
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.0e-68 262.7 173 76.9
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 2.0e-68 262.7 169 74.0
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 7.5e-68 260.8 173 74.0
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.3e-67 260.0 171 74.9
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 1.3e-67 260.0 174 74.7
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 1.7e-67 259.6 167 73.7
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 3.7e-67 258.5 171 74.9
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 4.9e-67 258.1 170 75.9
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 8.3e-67 257.3 178 73.0
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 8.3e-67 257.3 172 74.4
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 8.3e-67 257.3 181 71.8
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 8.3e-67 257.3 173 72.3
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.1e-66 256.9 173 72.8
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.9e-66 256.1 174 73.0
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 2.4e-66 255.8 172 73.3
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 2.4e-66 255.8 171 73.1
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 2.4e-66 255.8 172 70.3
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 3.2e-66 255.4 173 72.3
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 5.4e-66 254.6 174 71.8
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 5.4e-66 254.6 174 73.0
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 5.4e-66 254.6 168 73.2
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 9.2e-66 253.8 169 72.2
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.2e-66 253.8 201 66.2
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 1.6e-65 253.1 175 72.0
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 2.0e-65 252.7 169 72.2
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.7e-65 252.3 201 65.7
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.7e-65 252.3 201 65.7
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.7e-65 252.3 173 72.3
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.7e-65 252.3 173 72.3
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.7e-65 252.3 173 72.3
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.7e-65 252.3 173 69.9
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 4.6e-65 251.5 181 69.6
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.6e-65 251.5 173 72.3
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 4.6e-65 251.5 173 71.1
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 7.8e-65 250.8 173 71.7
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.0e-64 250.4 172 72.1
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 1.0e-64 250.4 175 72.0
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.3e-64 250.0 173 70.5
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.3e-64 250.0 170 71.8
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.7e-64 249.6 178 71.9
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 2.3e-64 249.2 173 72.3
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 2.3e-64 249.2 174 71.8
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 3.0e-64 248.8 174 71.8
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 8.6e-64 247.3 173 69.4
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 2.5e-63 245.7 175 68.0
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 4.3e-63 245.0 174 70.1
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 5.6e-63 244.6 174 71.8
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 3.6e-62 241.9 174 67.8
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 4.7e-62 241.5 208 61.1
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 4.7e-62 241.5 169 68.6
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 4.7e-62 241.5 165 71.5
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 4.7e-62 241.5 173 71.7
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 8.0e-62 240.7 160 73.8
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 8.0e-62 240.7 173 68.8
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 1.4e-61 240.0 174 69.5
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.8e-61 239.6 168 67.3
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 2.3e-61 239.2 159 74.2
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.1e-61 238.8 159 73.0
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.0e-61 238.4 159 72.3
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 4.0e-61 238.4 157 72.6
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.2e-60 236.9 159 72.3
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 2.0e-60 236.1 168 69.0
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 3.4e-60 235.3 196 63.8
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 4.4e-60 235.0 159 71.7
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 5.8e-60 234.6 170 67.6
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 4.9e-59 231.5 225 52.4
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 1.1e-58 230.3 181 65.2
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.1e-58 227.6 159 72.3
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.2e-57 226.9 173 63.0
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.6e-57 226.5 176 65.9
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 7.8e-57 224.2 166 63.9
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.3e-56 222.6 139 76.3
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 3.0e-56 222.2 173 61.8
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.0e-56 222.2 219 57.1
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 3.9e-56 221.9 169 62.7
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-55 220.3 210 58.1
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.9e-55 219.5 171 63.2
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 2.1e-54 216.1 189 63.5
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 6.2e-54 214.5 142 73.2
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 6.8e-53 211.1 263 46.4
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 6.0e-49 198.0 187 59.4
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.3e-48 196.8 174 61.5
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 4.7e-46 188.3 120 73.3
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 3.1e-45 185.7 168 54.8
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 1.2e-44 183.7 172 59.3
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 2.9e-43 179.1 113 72.6
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.3e-40 170.2 116 77.6
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 9.6e-39 164.1 107 73.8
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 4.9e-35 151.8 96 77.1
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 4.9e-35 151.8 107 69.2
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.4e-34 150.2 119 67.2
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.4e-34 150.2 116 59.5
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 3.2e-34 149.1 109 67.9
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 3.2e-34 149.1 113 58.4
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 5.4e-34 148.3 141 47.5
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.5e-31 139.4 148 44.6
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 4.3e-31 138.7 82 87.8
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 1.6e-30 136.7 81 81.5
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 1.6e-30 136.7 81 81.5
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 6.2e-30 134.8 114 59.6
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 6.9e-29 131.3 100 65.0
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 2.4e-26 122.9 105 61.9
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 2.5e-23 112.8 65 84.6
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 3.1e-21 105.9 63 74.6
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.6e-20 102.8 96 57.3
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 1.7e-19 100.1 61 73.8
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.7e-19 100.1 64 71.9
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 2.2e-19 99.8 112 38.4
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 2.2e-19 99.8 101 42.6
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.9e-19 98.6 93 55.9
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 4.9e-19 98.6 104 41.3
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 4.6e-17 92.0 62 62.9
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 3.9e-16 89.0 82 50.0
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 4.8e-14 82.0 106 36.8
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 6.9e-13 78.2 50 68.0
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 9.0e-13 77.8 136 35.3
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.0e-11 74.3 104 42.3
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.6e-06 57.0 32 84.4
Nn1g07676 Nelumbo nucifera HOM05D004886 ORTHO05D005868 8.2e-06 54.7 29 93.1


User provided reference genes

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