Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 4.2e-122 441.4 229 100.0
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 5.1e-120 434.5 229 97.4
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 1.9e-119 432.6 229 96.9
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 1.8e-117 426.0 229 94.8
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 2.4e-117 425.6 229 94.8
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 3.1e-117 425.2 229 95.6
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 5.3e-117 424.5 229 94.3
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 5.3e-117 424.5 229 95.2
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 5.3e-117 424.5 229 95.2
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 6.9e-117 424.1 229 94.3
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 2.2e-115 419.1 229 93.0
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 4.8e-110 401.4 229 90.8
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 9.0e-109 397.1 229 89.1
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 4.9e-107 391.3 229 86.9
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 1.4e-106 389.8 229 86.0
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 1.8e-104 382.9 229 85.6
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 1.2e-89 333.6 231 73.6
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 3.8e-83 312.0 232 69.8
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 8.5e-83 310.8 230 69.6
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 3.2e-82 308.9 230 68.3
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 4.2e-82 308.5 230 68.7
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 9.4e-82 307.4 230 68.3
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 2.7e-81 305.8 231 69.3
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 3.6e-81 305.4 230 67.0
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 7.9e-81 304.3 230 68.3
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 1.0e-80 303.9 229 66.4
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.0e-80 303.9 230 67.4
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 1.8e-80 303.1 229 65.9
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 3.0e-80 302.4 230 67.0
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 8.8e-80 300.8 229 65.9
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 1.1e-79 300.4 230 66.1
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 2.0e-79 299.7 230 68.3
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.0e-79 299.7 231 66.7
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 2.0e-79 299.7 230 65.2
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 2.0e-79 299.7 230 64.3
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 2.6e-79 299.3 230 66.5
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.6e-79 299.3 230 66.1
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 3.3e-79 298.9 230 65.7
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 4.4e-79 298.5 230 66.5
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 5.7e-79 298.1 229 64.6
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 5.7e-79 298.1 230 65.7
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 5.7e-79 298.1 230 66.1
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 9.7e-79 297.4 230 66.1
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 1.3e-78 297.0 229 65.5
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 2.2e-78 296.2 229 66.4
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 3.7e-78 295.4 229 64.6
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 4.8e-78 295.0 231 67.5
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 6.3e-78 294.7 230 64.8
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 6.3e-78 294.7 230 64.8
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 8.2e-78 294.3 230 64.8
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 8.2e-78 294.3 230 66.5
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 8.2e-78 294.3 230 67.0
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 1.1e-77 293.9 231 66.2
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 1.4e-77 293.5 232 65.1
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 1.4e-77 293.5 231 65.8
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 1.8e-77 293.1 230 65.7
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.8e-77 293.1 230 64.3
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.4e-77 292.7 231 66.2
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 2.4e-77 292.7 230 63.9
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 4.1e-77 292.0 230 66.5
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 7.0e-77 291.2 230 65.2
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 7.7e-76 287.7 232 62.9
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 7.7e-76 287.7 230 62.6
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 7.7e-76 287.7 231 65.8
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 1.0e-75 287.3 230 63.0
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 1.3e-75 287.0 232 62.5
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 1.3e-75 287.0 232 64.7
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 1.3e-75 287.0 228 64.9
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 1.3e-75 287.0 231 64.5
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 2.2e-75 286.2 230 62.2
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 3.8e-75 285.4 229 64.6
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 6.5e-75 284.6 230 63.5
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 1.1e-74 283.9 229 64.6
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.4e-74 283.5 231 64.1
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 1.9e-74 283.1 230 62.6
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 2.5e-74 282.7 230 63.0
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 4.2e-74 282.0 230 62.6
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 5.5e-74 281.6 254 59.8
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 7.2e-74 281.2 232 63.4
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 9.4e-74 280.8 229 61.6
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 9.4e-74 280.8 220 65.5
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 2.7e-73 279.3 238 61.3
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 3.6e-73 278.9 230 60.9
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 6.1e-73 278.1 229 63.3
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 6.1e-73 278.1 229 62.0
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.0e-72 277.3 230 60.0
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 1.4e-72 276.9 230 62.6
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 3.9e-72 275.4 232 61.6
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 1.1e-71 273.9 249 59.0
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 2.0e-71 273.1 230 60.0
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.0e-71 273.1 230 60.4
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 2.0e-71 273.1 230 62.2
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 2.6e-71 272.7 230 60.0
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 2.6e-71 272.7 263 56.7
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 3.3e-71 272.3 230 62.6
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 3.3e-71 272.3 252 57.9
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 5.7e-71 271.6 230 60.0
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 2.4e-69 266.2 138 100.0
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 7.0e-69 264.6 220 61.8
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 1.7e-67 260.0 230 58.7
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 3.8e-67 258.8 236 58.1
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.9e-66 256.5 231 61.0
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 3.2e-66 255.8 220 60.0
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 4.7e-65 251.9 175 76.6
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 4.4e-63 245.4 307 47.6
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 5.7e-63 245.0 318 46.9
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 3.7e-62 242.3 199 60.3
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 1.4e-61 240.4 214 58.9
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 2.4e-61 239.6 360 41.7
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.1e-58 230.7 230 54.3
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 4.4e-55 218.8 229 55.0
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 4.8e-54 215.3 180 63.3
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 9.1e-53 211.1 181 60.2
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 2.0e-52 209.9 231 50.2
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 2.0e-52 209.9 230 47.4
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 1.5e-50 203.8 166 60.8
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 4.7e-49 198.7 164 62.2
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 1.8e-48 196.8 228 50.9
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 2.0e-47 193.4 164 59.8
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 2.4e-45 186.4 141 64.5
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 7.0e-45 184.9 140 65.0
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 2.0e-44 183.3 282 39.0
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.0e-43 181.0 138 64.5
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.0e-43 181.0 164 57.3
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.7e-43 180.3 234 44.9
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 6.1e-41 171.8 117 70.9
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 1.8e-40 170.2 110 74.5
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 1.5e-39 167.2 241 44.4
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.6e-39 166.4 166 53.0
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 1.6e-36 157.1 243 40.7
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.6e-33 147.1 140 55.0
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 5.2e-32 142.1 266 38.7
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 2.2e-30 136.7 217 39.6
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 4.9e-30 135.6 292 35.3
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 4.9e-30 135.6 156 47.4
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 4.7e-25 119.0 90 64.4
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 6.2e-25 118.6 135 48.1
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.3e-22 110.9 125 51.2
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 8.3e-22 108.2 83 60.2
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.1e-20 103.6 71 69.0
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 4.3e-18 95.9 102 53.9
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 4.0e-16 89.4 80 63.8
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 4.0e-16 89.4 71 56.3
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 2.0e-15 87.0 63 61.9
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 5.8e-15 85.5 66 59.1
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 2.4e-13 80.1 105 48.6
CARHR037650 Cardamine hirsuta HOM05D004531 ORTHO05D005484 1.2e-12 77.8 53 75.5
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.6e-12 77.4 77 50.6
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.6e-12 77.4 54 68.5
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 2.1e-12 77.0 137 37.2
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 6.0e-12 75.5 87 51.7
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 7.8e-12 75.1 97 45.4
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 2.5e-10 70.1 58 55.2
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 6.9e-08 62.0 91 38.5
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 7.6e-07 58.5 61 45.9
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 2.2e-06 57.0 58 55.2
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 6.4e-06 55.5 41 63.4


User provided reference genes

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