Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 2411.7 1247 100.0
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 2395.5 1247 99.3
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 2297.7 1247 95.3
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 2296.2 1247 95.2
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 2250.3 1248 93.8
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 2206.0 1252 91.5
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 2115.9 1258 88.1
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 2045.8 1260 83.7
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 2021.5 1260 83.1
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 2020.7 1259 83.2
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 2019.6 1261 83.3
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 2003.4 1255 82.2
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1916.4 1186 84.6
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1852.0 1264 75.6
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1669.8 1251 69.7
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1651.7 1253 68.3
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1651.7 1248 69.1
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1643.6 1252 68.2
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1643.2 1250 67.8
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1642.5 1248 67.9
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1640.6 1252 68.0
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1636.7 1252 67.8
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1635.9 1246 67.8
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1635.5 1254 67.9
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1631.7 1277 66.3
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1629.0 1274 67.2
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1624.8 1254 67.7
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1619.8 1251 66.5
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1616.7 1284 66.0
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1615.9 1244 68.6
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1615.5 1262 65.5
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1611.3 1254 67.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1610.9 1276 66.5
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1606.7 1256 67.1
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1604.0 1239 67.5
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1602.0 1254 66.4
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1599.3 1255 66.7
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1598.2 1273 66.1
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1597.8 1253 66.2
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1597.0 1253 66.6
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1595.5 1254 66.1
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1593.6 1253 66.6
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1592.8 1272 66.0
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1592.8 1249 66.8
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1586.2 1253 65.9
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1585.5 1261 65.0
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1583.2 1248 66.3
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1580.1 1250 65.0
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1577.0 1246 65.9
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1575.1 1324 63.7
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1569.7 1252 64.9
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1568.9 1277 65.9
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1566.6 1231 65.9
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1562.4 1277 63.8
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1561.2 1266 64.6
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1561.2 1255 66.2
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1556.2 1276 64.1
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1556.2 1248 64.8
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1555.8 1242 64.3
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1554.3 1265 63.7
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1551.2 1256 64.6
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1550.0 1248 64.4
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1543.9 1252 63.3
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1542.3 1292 63.1
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1541.2 1266 62.7
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1540.8 1262 63.2
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1536.5 1311 62.6
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1531.5 1258 63.7
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1527.7 1250 63.1
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1526.9 1259 63.2
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1526.5 1272 62.9
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1523.8 1228 66.4
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1522.7 1275 63.6
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1520.0 1325 61.9
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1517.7 1181 66.4
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1516.5 1256 63.5
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1514.2 1327 61.3
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1513.0 1332 61.3
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1511.1 1249 62.9
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1503.8 1270 63.1
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1483.4 1251 62.4
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1478.4 1168 65.8
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1463.0 1280 60.9
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1441.4 1282 60.8
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1430.6 1182 64.2
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1425.2 1187 62.5
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1419.4 1265 60.0
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1382.9 1142 62.8
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1355.1 1263 57.0
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1353.6 1226 58.9
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1352.4 1012 69.1
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1347.8 1227 58.3
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1338.2 1283 56.0
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1330.9 1022 66.7
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1329.7 1237 57.7
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1170.6 1018 60.9
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1132.5 1229 49.0
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1095.5 1251 48.8
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1095.1 883 62.7
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1081.2 956 58.5
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 9.3e-309 1063.9 1241 49.4
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 2.5e-298 1029.2 959 60.2
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 2.4e-280 969.5 690 73.9
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 1.0e-278 964.1 885 57.7
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.4e-267 927.2 791 59.7
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 2.3e-267 926.4 1225 44.3
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 3.1e-264 916.0 813 59.5
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 3.6e-260 902.5 530 87.4
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 8.3e-257 891.3 601 79.0
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 9.8e-250 867.8 1192 43.1
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 3.6e-204 716.5 1266 37.2
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 9.0e-179 632.1 1102 37.6
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 3.6e-175 620.2 1249 33.5
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.8e-172 610.5 468 68.6
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 1.8e-163 581.3 600 51.8
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 2.0e-162 577.8 494 63.2
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 4.7e-143 513.5 647 46.5
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.2e-125 455.7 331 69.2
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 3.0e-121 441.0 1155 30.7
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 6.4e-116 423.3 711 41.2
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 3.3e-112 411.0 276 75.7
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 6.0e-90 337.0 339 53.7
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 6.2e-87 327.0 245 72.7
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 8.4e-84 316.6 257 67.7
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.4e-75 289.3 266 56.8
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.4e-75 289.3 266 56.8
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 5.7e-72 277.3 229 62.0
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 4.8e-71 274.2 200 71.0
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.5e-64 251.9 157 81.5
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 8.0e-50 203.8 104 92.3
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.5e-40 170.6 117 77.8
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 7.0e-38 164.1 108 77.8
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 2.0e-37 162.5 179 49.7
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 1.1e-35 156.8 174 50.0
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 2.1e-34 152.5 162 58.0
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 2.1e-34 152.5 160 53.1
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 4.8e-31 141.4 1229 22.3
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 8.0e-26 124.0 118 62.7
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 1.2e-21 110.2 222 34.2
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 4.3e-19 101.7 138 43.5
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 6.1e-18 97.8 122 41.0
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 3.0e-17 95.5 120 47.5
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 1.5e-16 93.2 95 52.6
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.1e-14 87.0 114 42.1
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 5.4e-14 84.7 114 42.1
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.2e-13 83.6 116 43.1
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 1.2e-10 73.6 113 37.2
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 2.8e-10 72.4 267 27.7
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 8.0e-10 70.9 46 78.3
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.1e-09 70.5 122 39.3
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.4e-08 65.5 61 52.5
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 5.8e-08 64.7 79 45.6
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 3.7e-07 62.0 53 60.4
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.4e-06 60.1 152 36.2
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 7.0e-06 57.8 70 44.3
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 7.0e-06 57.8 45 66.7


User provided reference genes

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