Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 8.3e-227 790.0 400 100.0
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 8.3e-227 790.0 400 100.0
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.8e-221 772.3 397 98.0
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 5.8e-220 767.3 397 97.5
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 9.9e-220 766.5 401 97.3
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-210 736.5 397 95.0
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 6.2e-206 720.7 411 90.5
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 6.9e-205 717.2 411 90.0
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 5.8e-204 714.1 405 90.1
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.6e-201 706.1 397 91.7
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.6e-201 706.1 411 88.6
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 4.6e-201 704.5 406 89.4
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 6.0e-201 704.1 411 89.1
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 1.7e-200 702.6 406 89.7
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 1.7e-200 702.6 411 88.8
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.4e-189 665.6 405 83.7
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 5.3e-181 637.9 414 79.0
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.5e-170 602.4 414 76.1
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.8e-168 596.3 412 75.5
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.4e-165 585.9 412 74.5
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 4.1e-165 585.1 411 74.5
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 5.9e-164 581.3 412 74.3
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.2e-163 579.3 411 73.7
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 3.8e-163 578.6 412 74.0
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 3.8e-163 578.6 411 73.5
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 1.4e-162 576.6 413 73.6
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.1e-161 572.8 410 73.7
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 6.1e-161 571.2 413 73.4
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 2.2e-155 552.7 367 74.7
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 3.2e-154 548.9 368 73.9
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 4.2e-154 548.5 393 71.8
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 3.6e-153 545.4 367 73.8
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 4.7e-153 545.0 361 74.8
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 6.1e-153 544.7 386 72.3
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 8.0e-153 544.3 387 72.1
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.0e-152 543.9 353 73.7
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.8e-150 535.8 384 68.5
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 4.8e-150 535.0 393 69.5
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.4e-149 533.5 384 68.8
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 1.8e-149 533.1 351 74.4
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.6e-148 530.0 404 67.6
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.6e-148 529.3 351 71.8
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 2.6e-148 529.3 361 72.6
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 4.5e-148 528.5 356 71.1
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.7e-147 526.6 375 70.7
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.2e-147 526.2 395 68.9
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 2.9e-147 525.8 356 71.6
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 5.0e-147 525.0 367 71.1
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 5.0e-147 525.0 367 71.1
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 6.5e-147 524.6 355 74.1
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 4.2e-146 521.9 359 72.4
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 5.5e-146 521.5 380 68.2
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 9.4e-146 520.8 381 69.6
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.6e-145 520.0 333 78.1
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 4.7e-145 518.5 364 71.4
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 4.7e-145 518.5 356 71.9
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 6.1e-145 518.1 357 73.4
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 8.0e-145 517.7 360 71.4
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.3e-144 516.2 371 69.3
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.0e-144 515.8 384 69.0
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 4.0e-144 515.4 362 70.4
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.0e-144 515.4 398 65.3
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 5.2e-144 515.0 349 72.8
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.8e-144 514.6 397 65.5
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 6.8e-144 514.6 397 66.0
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.2e-143 513.8 398 65.1
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.5e-143 513.5 384 68.5
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 3.4e-143 512.3 357 71.4
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.7e-143 511.5 355 75.2
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.5e-143 511.1 398 65.1
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.3e-142 510.4 405 64.9
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 4.8e-142 508.4 392 67.1
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 6.3e-142 508.1 352 70.7
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.1e-141 507.3 397 64.2
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 3.1e-141 505.8 396 65.9
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 3.1e-141 505.8 365 69.0
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 3.1e-141 505.8 357 71.1
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 9.1e-141 504.2 357 70.9
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 9.1e-141 504.2 357 70.9
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.0e-140 503.1 399 65.9
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 2.2e-139 499.6 369 66.4
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 8.5e-139 497.7 366 69.1
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.5e-138 496.9 379 67.0
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.5e-138 496.9 380 65.3
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.2e-138 495.7 349 67.0
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 3.2e-138 495.7 368 66.3
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 5.5e-138 495.0 369 65.9
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 5.5e-138 495.0 367 66.2
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 7.2e-138 494.6 346 69.1
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 2.7e-137 492.7 378 65.1
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 3.6e-137 492.3 329 74.8
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 8.0e-137 491.1 349 69.1
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.0e-136 490.7 447 57.7
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.8e-136 490.0 359 69.1
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.8e-136 490.0 385 65.2
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.8e-136 490.0 350 68.6
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 2.3e-136 489.6 356 66.6
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.2e-135 487.3 381 65.9
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.5e-135 486.9 372 63.2
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 2.6e-135 486.1 346 68.5
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.7e-134 483.4 398 61.6
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 4.9e-134 481.9 374 62.3
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 1.3e-131 473.8 362 65.5
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 8.6e-131 471.1 283 87.3
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 7.3e-130 468.0 330 69.4
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 9.5e-130 467.6 371 62.0
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 9.5e-130 467.6 371 62.3
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 3.0e-128 462.6 383 62.4
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 4.0e-128 462.2 329 68.7
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 3.2e-125 452.6 381 62.7
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.7e-124 449.5 333 67.9
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.6e-116 423.7 301 68.4
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 7.8e-116 421.4 374 59.1
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.8e-113 412.9 358 58.9
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.1e-112 409.5 337 58.8
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.4e-109 400.6 352 59.4
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.0e-107 392.9 286 70.6
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 7.3e-106 388.3 339 58.4
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.5e-106 387.9 368 53.3
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.9e-102 376.3 350 53.1
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 1.1e-101 374.4 356 56.7
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.4e-101 374.0 382 54.5
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-101 374.0 311 57.9
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 7.3e-98 361.7 229 83.8
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.8e-97 359.8 317 53.9
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 4.0e-96 355.9 253 70.8
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 9.3e-85 318.2 388 47.7
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.2e-79 301.2 334 50.9
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.0e-76 288.9 321 46.1
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 6.0e-76 288.9 380 41.1
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.0e-71 273.9 297 46.8
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.5e-70 268.9 344 42.4
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 8.7e-67 258.5 293 44.7
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 2.5e-66 256.9 306 44.8
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.3e-66 256.5 226 61.1
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-63 247.7 301 41.5
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 5.0e-62 242.7 234 55.1
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-61 240.4 204 65.2
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-61 240.4 297 42.8
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-60 238.0 291 41.2
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.1e-60 237.3 179 64.2
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.3e-59 233.8 305 38.7
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-58 231.1 291 40.5
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 7.4e-58 228.8 155 75.5
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-56 224.6 271 43.2
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 5.5e-53 212.6 316 39.9
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 5.3e-48 196.1 152 57.2
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.8e-43 181.0 314 34.7
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.8e-43 181.0 159 65.4
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.3e-43 180.6 307 34.2
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.0e-42 177.6 307 35.5
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.0e-42 177.6 159 59.1
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 5.7e-42 176.0 219 44.7
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 2.2e-41 174.1 113 79.6
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.2e-41 172.2 314 33.8
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 7.0e-40 169.1 138 58.7
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.0e-38 162.9 323 31.3
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.6e-36 157.9 316 30.1
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.2e-33 145.6 301 33.6
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.0e-32 142.5 313 27.5
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.9e-29 134.4 299 29.1
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.1e-28 131.0 294 29.3
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-26 125.2 298 30.2
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 2.6e-26 124.0 77 80.5
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.4e-26 123.6 103 54.4
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.4e-26 123.2 376 27.4
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 3.7e-25 120.2 97 67.0
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 5.4e-24 116.3 326 29.4
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.5e-23 113.6 100 57.0
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.9e-23 112.8 219 31.1
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-21 107.8 189 33.3
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.2e-21 106.7 348 28.2
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 9.5e-21 105.5 352 27.6
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.2e-19 99.8 309 27.8
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 8.3e-17 92.4 364 26.1
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 4.0e-11 73.6 63 60.3
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.8e-10 68.9 147 32.7


User provided reference genes

Program Settings