Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p01150 Brassica napus HOM05D003039 ORTHO05D017397 1.6e-58 229.2 112 100.0
BraA04t15832Z Brassica rapa HOM05D003039 ORTHO05D008410 1.6e-58 229.2 112 100.0
BcaC07g40632 Brassica carinata HOM05D003039 ORTHO05D008410 5.9e-37 157.5 144 61.8
C08p36220 Brassica napus HOM05D003039 ORTHO05D008410 5.9e-37 157.5 144 61.8
BolC8t51204H Brassica oleracea HOM05D003039 ORTHO05D008410 5.9e-37 157.5 144 61.8
A09p53410 Brassica napus HOM05D003039 ORTHO05D008410 9.7e-32 140.2 133 60.2
BraA09t40767Z Brassica rapa HOM05D003039 ORTHO05D008410 1.3e-31 139.8 132 59.8
AT3G61360 Arabidopsis thaliana HOM05D003039 ORTHO05D008410 2.9e-28 128.6 126 56.3
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 3.8e-28 128.3 144 53.5
AL1G53570 Arabidopsis lyrata HOM05D003039 ORTHO05D017397 1.1e-27 126.7 142 52.8
CARHR171700 Cardamine hirsuta HOM05D003039 ORTHO05D008410 2.5e-27 125.6 126 55.6
Carub.0005s2803 Capsella rubella HOM05D003039 ORTHO05D008410 8.0e-26 120.6 121 56.2
Aa31LG9G15670 Aethionema arabicum HOM05D003039 ORTHO05D008410 1.5e-24 116.3 126 53.2
MBI14_g08138_MAGBIO Magnolia biondii HOM05D003039 ORTHO05D008410 5.2e-17 91.3 140 44.3
Lj1P893G46 Lonicera japonica HOM05D003039 ORTHO05D008410 6.3e-15 84.3 139 39.6
PGR083G2073 Punica granatum HOM05D003039 ORTHO05D008410 8.2e-15 84.0 139 39.6
TAR633G0505 Trochodendron aralioides HOM05D003039 ORTHO05D008410 1.1e-14 83.6 140 40.0
TAR633G1464 Trochodendron aralioides HOM05D003039 ORTHO05D008410 1.1e-14 83.6 140 40.0
CsaV3_5G005760 Cucumis sativus L. HOM05D003039 ORTHO05D008410 1.6e-13 79.7 141 39.0
Eucgr.D00236 Eucalyptus grandis HOM05D003039 ORTHO05D008410 2.0e-13 79.3 139 36.7
Hma1.2p1_0178F.1_g078560 Hydrangea macrophylla HOM05D003039 ORTHO05D008410 2.0e-13 79.3 119 40.3
AUR62020631 Chenopodium quinoa HOM05D000182 ORTHO05D000112 4.5e-13 78.2 141 36.2
RcHm_v2.0_Chr1g0329261 Rosa chinensis HOM05D003039 ORTHO05D008410 1.0e-12 77.0 88 47.7
Atru.chr4.952 Acer truncatum HOM05D003039 ORTHO05D008410 1.7e-12 76.3 86 47.7
FvH4_7g04300 Fragaria vesca HOM05D003039 ORTHO05D008410 2.2e-12 75.9 88 46.6
FAN06G2480 Fragaria x ananassa HOM05D003039 ORTHO05D008410 2.2e-12 75.9 88 46.6
FAN10G1410 Fragaria x ananassa HOM05D003039 ORTHO05D008410 2.2e-12 75.9 88 46.6
MD11G1035500 Malus domestica HOM05D003039 ORTHO05D008410 2.2e-12 75.9 88 45.5
Rhsim02G0205300 Rhododendron simsii HOM05D003039 ORTHO05D008410 2.2e-12 75.9 86 46.5
Ca_04108_v3 Cicer arietinum L. HOM05D003039 ORTHO05D008410 1.1e-11 73.6 86 45.3
Ca_04117_v3 Cicer arietinum L. HOM05D003039 ORTHO05D008410 1.1e-11 73.6 86 45.3
Prupe.2G028200 Prunus persica HOM05D003039 ORTHO05D008410 1.1e-11 73.6 88 45.5
Lj1g0018465 Lotus japonicus HOM05D003039 ORTHO05D008410 1.5e-11 73.2 86 45.3
Sabra01G0100800 Salix brachista HOM05D003039 ORTHO05D008410 1.5e-11 73.2 88 43.2
Thecc.06G053600 Theobroma cacao HOM05D003039 ORTHO05D008410 1.5e-11 73.2 88 44.3
MELO3C005377.2 Cucumis melo HOM05D003039 ORTHO05D008410 1.9e-11 72.8 147 37.4
VMungo0016G0002 Vigna mungo HOM05D003039 ORTHO05D008410 1.9e-11 72.8 86 44.2
MD03G1030500 Malus domestica HOM05D003039 ORTHO05D008410 2.5e-11 72.4 88 45.5
Nn2g12485 Nelumbo nucifera HOM05D003039 ORTHO05D008410 4.2e-11 71.6 86 45.3
Duzib235G1487 Durio zibethinus HOM05D003039 ORTHO05D008410 7.2e-11 70.9 88 40.9
Psat3g196640 Pisum sativum HOM05D003039 ORTHO05D008410 9.4e-11 70.5 85 42.4
CANSAT78G1923 Cannabis sativa HOM05D003039 ORTHO05D008410 1.2e-10 70.1 86 39.5
Lalb_Chr10g0093391 Lupinus albus HOM05D003039 ORTHO05D008410 1.6e-10 69.7 85 43.5
CSS0016374 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 2.1e-10 69.3 86 43.0
Migut.C01014 Erythranthe guttata HOM05D003039 ORTHO05D008410 2.7e-10 68.9 87 50.6
Potri.001G130400 Populus trichocarpa HOM05D003039 ORTHO05D008410 2.7e-10 68.9 88 42.0
COL.COLO4_07473 Corchorus olitorius HOM05D003039 ORTHO05D008410 3.6e-10 68.6 88 40.9
TPR.G4337 Trifolium pratense HOM05D003039 ORTHO05D008410 6.1e-10 67.8 86 40.7
Ciclev10019823m.g Citrus clementina HOM05D003039 ORTHO05D008410 8.0e-10 67.4 88 43.2
Glyma.19G010600 Glycine max HOM05D003039 ORTHO05D008410 8.0e-10 67.4 86 43.0
Gorai.013G134200 Gossypium raimondii HOM05D003039 ORTHO05D008410 1.8e-09 66.2 113 34.5
VMungo1383G1437 Vigna mungo HOM05D003039 ORTHO05D008410 1.8e-09 66.2 42 61.9
THA.LOC104812722 Tarenaya hassleriana HOM05D003039 ORTHO05D008410 2.3e-09 65.9 89 43.8
CSS0042843 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 3.0e-09 65.5 86 43.0
CSS0020082 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 5.2e-09 64.7 86 40.7
AUR62038751 Chenopodium quinoa HOM05D003039 ORTHO05D008410 5.2e-09 64.7 86 41.9
Gohir.D13G119800 Gossypium hirsutum HOM05D003039 ORTHO05D008410 1.2e-08 63.5 109 34.9
CSS0033752 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 1.5e-08 63.2 86 39.5
Sp5g02040 Schrenkiella parvula HOM05D003039 ORTHO05D008410 2.0e-08 62.8 53 58.5
Gohir.A13G116700 Gossypium hirsutum HOM05D003039 ORTHO05D008410 4.4e-08 61.6 109 34.9
EL10Ac5g11611 Beta vulgaris HOM05D003039 ORTHO05D008410 1.3e-07 60.1 86 39.5
CDE07G0739 Ceratophyllum demersum HOM05D003039 ORTHO05D008410 1.3e-07 60.1 34 61.8
CSS0033889 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 2.2e-07 59.3 71 45.1
Os06g0694600 Oryza sativa ssp. japonica HOM05D003039 ORTHO05D008410 2.2e-07 59.3 88 37.5
BcaC06g33710 Brassica carinata HOM05D014792 ORTHO05D017397 2.8e-07 58.9 38 65.8
C05p32740 Brassica napus HOM05D014792 ORTHO05D017397 2.8e-07 58.9 38 65.8
C07p38430 Brassica napus HOM05D014792 ORTHO05D017397 2.8e-07 58.9 38 65.8
BolC5t32006H Brassica oleracea HOM05D014792 ORTHO05D017397 2.8e-07 58.9 38 65.8
Aqoxy7G02983 Aquilegia oxysepala HOM05D003039 ORTHO05D008410 3.7e-07 58.5 94 37.2
A07p14620 Brassica napus HOM05D014792 ORTHO05D017397 3.7e-07 58.5 38 65.8
ATR0580G194 Amborella trichopoda HOM05D003039 ORTHO05D008410 8.3e-07 57.4 94 36.2
A02p13720 Brassica napus HOM05D014792 ORTHO05D017397 1.8e-06 56.2 38 63.2
A07p07620 Brassica napus HOM05D014792 ORTHO05D008410 1.8e-06 56.2 38 60.5
BraA02t06430Z Brassica rapa HOM05D014792 ORTHO05D017397 1.8e-06 56.2 38 63.2


User provided reference genes

Program Settings