Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p01040 Brassica napus HOM05D000354 ORTHO05D000747 8.1e-95 350.5 192 100.0
BraA04t15821Z Brassica rapa HOM05D000354 ORTHO05D000747 8.1e-95 350.5 192 100.0
BcaB02g08161 Brassica carinata HOM05D000354 ORTHO05D000747 7.4e-40 167.9 116 87.9
A09p53620 Brassica napus HOM05D000354 ORTHO05D000747 1.0e-33 147.5 117 76.1
BraA09t40783Z Brassica rapa HOM05D000354 ORTHO05D000747 1.0e-33 147.5 117 76.1
BcaC07g42672 Brassica carinata HOM05D000354 ORTHO05D000747 2.3e-33 146.4 119 75.6
BcaC07g40652 Brassica carinata HOM05D000354 ORTHO05D000747 1.5e-32 143.7 118 76.3
BolC8t51223H Brassica oleracea HOM05D000354 ORTHO05D000747 1.5e-32 143.7 118 76.3
C08p36400 Brassica napus HOM05D000354 ORTHO05D000747 2.6e-32 142.9 120 75.0
Thhalv10006504m.g Eutrema salsugineum HOM05D000354 ORTHO05D000747 1.0e-28 131.0 121 69.4
Carub.0005s2824 Capsella rubella HOM05D000354 ORTHO05D000747 3.8e-28 129.0 143 62.2
Sp5g01860 Schrenkiella parvula HOM05D000354 ORTHO05D000747 1.5e-24 117.1 120 66.7
BcaC07g40670 Brassica carinata HOM05D000354 ORTHO05D000747 3.4e-24 115.9 115 67.8
AL5G43920 Arabidopsis lyrata HOM05D000354 ORTHO05D000747 7.5e-24 114.8 144 59.7
CARHR171870 Cardamine hirsuta HOM05D000354 ORTHO05D000747 1.3e-23 114.0 126 66.7
BcaC07g42683 Brassica carinata HOM05D000354 ORTHO05D000747 2.4e-22 109.8 118 62.7
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 1.2e-21 107.5 103 62.1
AT3G61550 Arabidopsis thaliana HOM05D000354 ORTHO05D000747 4.2e-19 99.0 120 60.0
Atru.chr5.570 Acer truncatum HOM05D000354 ORTHO05D000747 7.2e-19 98.2 114 51.8
Atru.chr5.589 Acer truncatum HOM05D000354 ORTHO05D000747 7.2e-19 98.2 114 51.8
FAN03G2540 Fragaria x ananassa HOM05D000354 ORTHO05D000747 7.2e-19 98.2 104 53.8
FAN10G0199 Fragaria x ananassa HOM05D000830 ORTHO05D003205 4.7e-18 95.5 104 52.9
FAN10G3009 Fragaria x ananassa HOM05D000354 ORTHO05D000747 4.7e-18 95.5 104 52.9
Carub.0004s2884 Capsella rubella HOM05D000354 ORTHO05D000747 8.0e-18 94.7 137 50.4
Manes.01G251800 Manihot esculenta HOM05D000354 ORTHO05D000747 1.0e-17 94.4 103 55.3
AT2G46160 Arabidopsis thaliana HOM05D000354 ORTHO05D000747 1.8e-17 93.6 131 46.6
CARHR141440 Cardamine hirsuta HOM05D000354 ORTHO05D000747 2.3e-17 93.2 131 45.8
Cpa.g.sc11.63 Carica papaya HOM05D000354 ORTHO05D000747 2.3e-17 93.2 103 56.3
AL4G45410 Arabidopsis lyrata HOM05D000354 ORTHO05D000747 3.0e-17 92.8 131 46.6
Thecc.01G351500 Theobroma cacao HOM05D000354 ORTHO05D000747 4.0e-17 92.4 100 56.0
Thhalv10001804m.g Eutrema salsugineum HOM05D000354 ORTHO05D000747 5.2e-17 92.0 108 51.9
Duzib133G0009 Durio zibethinus HOM05D000354 ORTHO05D000747 8.9e-17 91.3 100 55.0
Duzib138G0414 Durio zibethinus HOM05D000354 ORTHO05D000747 8.9e-17 91.3 102 59.8
FvH4_7g15500 Fragaria vesca HOM05D000354 ORTHO05D000747 1.2e-16 90.9 105 51.4
FAN06G0928 Fragaria x ananassa HOM05D000354 ORTHO05D000747 1.2e-16 90.9 105 51.4
FAN06G2870 Fragaria x ananassa HOM05D000830 ORTHO05D003205 1.2e-16 90.9 105 51.4
QL04p055856 Quercus lobata HOM05D000354 ORTHO05D000747 1.2e-16 90.9 126 47.6
Nn1g01714 Nelumbo nucifera HOM05D000354 ORTHO05D000747 1.5e-16 90.5 107 54.2
RcHm_v2.0_Chr1g0357831 Rosa chinensis HOM05D000354 ORTHO05D000747 3.4e-16 89.4 103 51.5
A05p01650 Brassica napus HOM05D000354 ORTHO05D000747 7.5e-16 88.2 108 52.8
Sabra02G0146300 Salix brachista HOM05D000354 ORTHO05D000747 7.5e-16 88.2 114 49.1
CiPaw.01G068500 Carya illinoinensis HOM05D000354 ORTHO05D000747 9.8e-16 87.8 103 51.5
Potri.002G165200 Populus trichocarpa HOM05D000354 ORTHO05D000747 9.8e-16 87.8 121 47.9
BraA05t19161Z Brassica rapa HOM05D000354 ORTHO05D000747 1.3e-15 87.4 108 51.9
Manes.05G028500 Manihot esculenta HOM05D000354 ORTHO05D000747 1.7e-15 87.0 136 47.8
Sabra14G0066000 Salix brachista HOM05D000354 ORTHO05D000747 1.7e-15 87.0 122 48.4
BcaC02g12498 Brassica carinata HOM05D000354 ORTHO05D000747 2.2e-15 86.7 108 51.9
C04p01890 Brassica napus HOM05D000354 ORTHO05D000747 2.2e-15 86.7 108 51.9
CiPaw.02G035900 Carya illinoinensis HOM05D000354 ORTHO05D000747 2.2e-15 86.7 108 50.0
PGR031G2160 Punica granatum HOM05D000354 ORTHO05D000747 2.2e-15 86.7 101 52.5
VMungo0331G0973 Vigna mungo HOM05D000354 ORTHO05D000747 2.2e-15 86.7 100 49.0
Gohir.A07G140300 Gossypium hirsutum HOM05D000354 ORTHO05D000747 4.9e-15 85.5 98 54.1
Phvul.010G105200 Phaseolus vulgaris HOM05D000354 ORTHO05D000747 8.3e-15 84.7 102 50.0
TAR375G0907 Trochodendron aralioides HOM05D000354 ORTHO05D000747 8.3e-15 84.7 100 49.0
Dinv43869 Davidia involucrata HOM05D000354 ORTHO05D000747 1.4e-14 84.0 102 50.0
Nn7g37311 Nelumbo nucifera HOM05D000354 ORTHO05D000747 1.4e-14 84.0 106 50.0
A04p34300 Brassica napus HOM05D000354 ORTHO05D000747 2.4e-14 83.2 108 47.2
BraA04t18891Z Brassica rapa HOM05D000354 ORTHO05D000747 2.4e-14 83.2 108 47.2
BcaC02g12709 Brassica carinata HOM05D000354 ORTHO05D000747 5.4e-14 82.0 98 52.0
Migut.B01803 Erythranthe guttata HOM05D000354 ORTHO05D000747 5.4e-14 82.0 102 52.0
Gorai.001G157500 Gossypium raimondii HOM05D000354 ORTHO05D000747 5.4e-14 82.0 98 53.1
Oeu054359.1 Olea europaea HOM05D000354 ORTHO05D000747 5.4e-14 82.0 100 51.0
Actinidia02816 Actinidia chinensis HOM05D000354 ORTHO05D000747 7.0e-14 81.6 113 50.4
MSTRG.20865 Avicennia marina HOM05D000354 ORTHO05D000747 7.0e-14 81.6 104 49.0
Gohir.D07G145500 Gossypium hirsutum HOM05D000354 ORTHO05D000747 7.0e-14 81.6 98 55.1
Hma1.2p1_0335F.1_g128820 Hydrangea macrophylla HOM05D000354 ORTHO05D000747 7.0e-14 81.6 115 48.7
Hma1.2p1_1959F.1_g309075 Hydrangea macrophylla HOM05D000354 ORTHO05D000747 7.0e-14 81.6 115 48.7
Peaxi162Scf00585g00061 Petunia axillaris HOM05D000354 ORTHO05D000747 9.2e-14 81.3 99 44.4
BcaC02g07025 Brassica carinata HOM05D000354 ORTHO05D000747 1.2e-13 80.9 98 48.0
Glyma.16G030900 Glycine max HOM05D000354 ORTHO05D000747 1.6e-13 80.5 111 47.7
Gohir.D08G149100 Gossypium hirsutum HOM05D000354 ORTHO05D000747 1.6e-13 80.5 130 43.8
Gorai.004G154800 Gossypium raimondii HOM05D000354 ORTHO05D000747 1.6e-13 80.5 130 43.8
Phvul.008G057200 Phaseolus vulgaris HOM05D000354 ORTHO05D000747 1.6e-13 80.5 97 46.4
Ca_03493_v3 Cicer arietinum L. HOM05D000354 ORTHO05D000747 2.7e-13 79.7 100 46.0
Medtr8g028465 Medicago truncatula HOM05D000354 ORTHO05D000747 3.5e-13 79.3 100 46.0
unitig_8.g3401 Utricularia gibba HOM05D000354 ORTHO05D000747 3.5e-13 79.3 98 48.0
Gohir.A11G092800 Gossypium hirsutum HOM05D000354 ORTHO05D000747 7.8e-13 78.2 104 50.0
Gohir.D12G110100 Gossypium hirsutum HOM05D000354 ORTHO05D000747 1.0e-12 77.8 104 44.2
Gorai.008G119400 Gossypium raimondii HOM05D000354 ORTHO05D000747 1.0e-12 77.8 104 44.2
CANSAT94G0018 Cannabis sativa HOM05D000354 ORTHO05D000747 1.3e-12 77.4 107 44.9
MD07G1130500 Malus domestica HOM05D000830 ORTHO05D003205 1.3e-12 77.4 100 49.0
Sp4g28220 Schrenkiella parvula HOM05D000354 ORTHO05D000747 1.7e-12 77.0 105 44.8
VMungo1383G1513 Vigna mungo HOM05D000354 ORTHO05D000747 1.7e-12 77.0 99 44.4
Psat4g158000 Pisum sativum HOM05D000354 ORTHO05D000747 2.3e-12 76.6 102 46.1
CsaV3_3G008560 Cucumis sativus L. HOM05D000354 ORTHO05D000747 2.9e-12 76.3 97 47.4
Potri.014G091000 Populus trichocarpa HOM05D000354 ORTHO05D000747 2.9e-12 76.3 119 43.7
TAR629G2798 Trochodendron aralioides HOM05D000354 ORTHO05D000747 2.9e-12 76.3 103 48.5
Gohir.D11G097600 Gossypium hirsutum HOM05D000354 ORTHO05D000747 3.8e-12 75.9 102 50.0
Gorai.007G103900 Gossypium raimondii HOM05D000354 ORTHO05D000747 3.8e-12 75.9 102 50.0
Rhsim01G0165900 Rhododendron simsii HOM05D000354 ORTHO05D000747 3.8e-12 75.9 92 48.9
Aa31LG1G27550 Aethionema arabicum HOM05D000354 ORTHO05D000747 5.0e-12 75.5 120 47.5
Gohir.A12G106400 Gossypium hirsutum HOM05D000354 ORTHO05D000747 5.0e-12 75.5 104 43.3
Hma1.2p1_0623F.1_g191140 Hydrangea macrophylla HOM05D000354 ORTHO05D000747 5.0e-12 75.5 118 39.8
Oeu015215.1 Olea europaea HOM05D000354 ORTHO05D000747 5.0e-12 75.5 96 46.9
TWI14G0186 Tripterygium wilfordii HOM05D000354 ORTHO05D000747 5.0e-12 75.5 103 47.6
TAR374G1283 Trochodendron aralioides HOM05D000354 ORTHO05D000747 5.0e-12 75.5 101 43.6
Aqoxy7G00176 Aquilegia oxysepala HOM05D000354 ORTHO05D000747 6.6e-12 75.1 96 49.0
MD01G1072300 Malus domestica HOM05D000354 ORTHO05D000747 8.6e-12 74.7 102 48.0
PGSC0003DMG400019406 Solanum tuberosum HOM05D000354 ORTHO05D000747 1.5e-11 73.9 99 44.4
Solyc01g095180.2 Solanum lycopersicum HOM05D000354 ORTHO05D000747 1.9e-11 73.6 116 41.4
Solyc10g011880.1 Solanum lycopersicum HOM05D000354 ORTHO05D000747 1.9e-11 73.6 99 44.4
Sopen01g038970 Solanum pennellii HOM05D000354 ORTHO05D000747 1.9e-11 73.6 116 41.4
PGSC0003DMG400000070 Solanum tuberosum HOM05D000354 ORTHO05D000747 1.9e-11 73.6 116 41.4
MBI06_g33542_MAGBIO Magnolia biondii HOM05D001976 ORTHO05D000747 2.5e-11 73.2 94 48.9
GSVIVG01026978001 Vitis vinifera HOM05D000354 ORTHO05D000747 2.5e-11 73.2 99 44.4
HPP92_011503 Vanilla planifolia HOM05D000354 ORTHO05D000747 5.6e-11 72.0 92 47.8
Sopen10g005680 Solanum pennellii HOM05D000354 ORTHO05D000747 7.3e-11 71.6 99 43.4
arahy.Tifrunner.gnm1.ann1.3CXU30 Arachis hypogaea HOM05D000354 ORTHO05D000747 1.2e-10 70.9 97 47.4
arahy.Tifrunner.gnm1.ann1.LL93J9 Arachis hypogaea HOM05D000354 ORTHO05D000747 1.2e-10 70.9 97 47.4
Lsat_1_v5_gn_4_34921 Lactuca sativa HOM05D000354 ORTHO05D000747 1.2e-10 70.9 96 47.9
Lsat_1_v5_gn_7_2581 Lactuca sativa HOM05D000830 ORTHO05D003205 1.6e-10 70.5 107 43.0
ATR1131G009 Amborella trichopoda HOM05D000354 ORTHO05D000747 2.8e-10 69.7 95 48.4
Cc02_g38670 Coffea canephora HOM05D000354 ORTHO05D000747 2.8e-10 69.7 100 44.0
CDE10G0984 Ceratophyllum demersum HOM05D000354 ORTHO05D000747 4.7e-10 68.9 101 43.6
Lalb_Chr10g0096591 Lupinus albus HOM05D000830 ORTHO05D003205 1.0e-09 67.8 108 40.7
MSTRG.26866 Avicennia marina HOM05D000354 ORTHO05D000747 3.1e-09 66.2 104 42.3
Os01g0736600 Oryza sativa ssp. japonica HOM05D000354 ORTHO05D000747 4.0e-09 65.9 164 34.1
SEGI_16938 Sequoiadendron giganteum HOM05D000354 ORTHO05D000747 5.2e-09 65.5 97 41.2
SHI13362 Sapria himalayana HOM05D000354 ORTHO05D000747 2.0e-08 63.5 98 39.8
CDE03G0034 Ceratophyllum demersum HOM05D000354 ORTHO05D000747 2.6e-08 63.2 93 40.9
HanXRQChr16g0523261 Helianthus annuus HOM05D000354 ORTHO05D000747 2.6e-08 63.2 101 40.6
Prupe.2G178600 Prunus persica HOM05D000354 ORTHO05D000747 5.8e-08 62.0 98 39.8
unitig_52.g17060 Utricularia gibba HOM05D000354 ORTHO05D000747 5.8e-08 62.0 96 42.7
Glyma.09G253500 Glycine max HOM05D000354 ORTHO05D000747 7.5e-08 61.6 92 38.0
Nitab4.5_0000915g0060 Nicotiana tabacum HOM05D000830 ORTHO05D003205 9.8e-08 61.2 91 44.0
Os05g0526600 Oryza sativa ssp. japonica HOM05D000354 ORTHO05D000747 9.8e-08 61.2 115 38.3
Zm00001eb371270 Zea mays HOM05D000354 ORTHO05D000747 9.8e-08 61.2 102 41.2
MELO3C006076.2 Cucumis melo HOM05D000354 ORTHO05D000747 1.3e-07 60.8 85 43.5
Migut.N01468 Erythranthe guttata HOM05D000354 ORTHO05D000747 1.3e-07 60.8 105 41.0
EL10Ac1g00348 Beta vulgaris HOM05D000354 ORTHO05D000747 2.2e-07 60.1 114 37.7
DCAR_008640 Daucus carota HOM05D000354 ORTHO05D000747 2.9e-07 59.7 99 45.5
Zm00001eb293470 Zea mays HOM05D000354 ORTHO05D000747 1.4e-06 57.4 114 38.6
PSO135G0381 Papaver somniferum HOM05D000354 ORTHO05D000747 1.9e-06 57.0 94 40.4
Zm00001eb273080 Zea mays HOM05D000783 ORTHO05D000747 1.9e-06 57.0 104 40.4
Zm00001eb313170 Zea mays HOM05D000783 ORTHO05D000747 1.9e-06 57.0 104 40.4
Zm00001eb341190 Zea mays HOM05D000783 ORTHO05D014922 1.9e-06 57.0 104 40.4
Zm00001eb371600 Zea mays HOM05D000783 ORTHO05D000747 1.9e-06 57.0 104 40.4
Zm00001eb206640 Zea mays HOM05D000783 ORTHO05D014922 3.2e-06 56.2 102 41.2
Zm00001eb409590 Zea mays HOM05D000354 ORTHO05D000747 3.2e-06 56.2 102 41.2
Zm00001eb413840 Zea mays HOM05D000354 ORTHO05D000747 3.2e-06 56.2 102 41.2
Medtr7g079280 Medicago truncatula HOM05D000354 ORTHO05D000747 4.1e-06 55.8 98 36.7
Nitab4.5_0009823g0010 Nicotiana tabacum HOM05D000354 ORTHO05D000747 4.1e-06 55.8 75 45.3
Glyma.07G062800 Glycine max HOM05D000354 ORTHO05D000747 5.4e-06 55.5 114 33.3
Zm00001eb153950 Zea mays HOM05D000354 ORTHO05D000747 5.4e-06 55.5 102 40.2
Sed0010026 Sechium edule HOM05D000354 ORTHO05D000747 7.0e-06 55.1 85 41.2
Sed0022081 Sechium edule HOM05D000354 ORTHO05D000747 9.2e-06 54.7 82 47.6


User provided reference genes

Program Settings