Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10314 Brassica carinata HOM05D002674 ORTHO05D008041 3.7e-49 198.0 107 100.0
A04p00510 Brassica napus HOM05D002674 ORTHO05D008041 3.7e-49 198.0 107 100.0
BolC4t24576H Brassica oleracea HOM05D002674 ORTHO05D008041 3.7e-49 198.0 107 100.0
BraA04t15771Z Brassica rapa HOM05D002674 ORTHO05D008041 3.7e-49 198.0 107 100.0
Sp5g00710 Schrenkiella parvula HOM05D002674 ORTHO05D008041 3.5e-47 191.4 107 96.3
C04p30420 Brassica napus HOM05D002674 ORTHO05D008041 4.6e-47 191.0 107 97.2
BcaB02g08097 Brassica carinata HOM05D002674 ORTHO05D008041 5.1e-46 187.6 107 94.4
BcaC07g42733 Brassica carinata HOM05D002674 ORTHO05D008041 4.3e-45 184.5 107 93.5
Thhalv10006327m.g Eutrema salsugineum HOM05D002674 ORTHO05D008041 4.3e-45 184.5 107 93.5
Carub.0005s2947 Capsella rubella HOM05D002674 ORTHO05D008041 9.5e-45 183.3 107 92.5
AL5G45590 Arabidopsis lyrata HOM05D002674 ORTHO05D008041 4.7e-44 181.0 107 92.5
AT3G62810 Arabidopsis thaliana HOM05D002674 ORTHO05D008041 1.1e-43 179.9 107 91.6
Aa31LG10G16570 Aethionema arabicum HOM05D002674 ORTHO05D008041 6.8e-43 177.2 107 88.8
BraA09t40877Z Brassica rapa HOM05D002674 ORTHO05D008041 9.9e-42 173.3 107 89.7
A09p54660 Brassica napus HOM05D002674 ORTHO05D008041 1.9e-40 169.1 107 87.9
CARHR173080 Cardamine hirsuta HOM05D002674 ORTHO05D008041 1.3e-38 162.9 107 82.2
Oeu048338.1 Olea europaea HOM05D002674 ORTHO05D008041 2.1e-36 155.6 102 76.5
Manes.01G218700 Manihot esculenta HOM05D002674 ORTHO05D008041 4.7e-36 154.5 99 79.8
Cpa.g.sc9.264 Carica papaya HOM05D002674 ORTHO05D008041 1.4e-35 152.9 103 77.7
COL.COLO4_23349 Corchorus olitorius HOM05D002674 ORTHO05D008041 1.8e-35 152.5 105 76.2
Thecc.01G300000 Theobroma cacao HOM05D002674 ORTHO05D008041 1.8e-35 152.5 105 75.2
TWI23G1311 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 1.8e-35 152.5 103 77.7
Ciclev10022953m.g Citrus clementina HOM05D002674 ORTHO05D008041 4.0e-35 151.4 101 76.2
Gohir.D08G085400 Gossypium hirsutum HOM05D002674 ORTHO05D008041 9.0e-35 150.2 105 75.2
Cc01_g20820 Coffea canephora HOM05D002674 ORTHO05D008041 1.2e-34 149.8 99 76.8
Gohir.A08G076000 Gossypium hirsutum HOM05D002674 ORTHO05D008041 1.2e-34 149.8 105 74.3
Prupe.8G261100 Prunus persica HOM05D002674 ORTHO05D008041 2.0e-34 149.1 103 76.7
SalBow3G0298 Salvia bowleyana HOM05D002674 ORTHO05D008041 2.6e-34 148.7 102 75.5
Atru.chr5.1150 Acer truncatum HOM05D002674 ORTHO05D008041 4.4e-34 147.9 105 73.3
Potri.014G129800 Populus trichocarpa HOM05D002674 ORTHO05D008041 4.4e-34 147.9 99 76.8
ECA247G1692 Erigeron canadensis HOM05D002674 ORTHO05D008041 7.6e-34 147.1 104 72.1
HanXRQChr15g0465661 Helianthus annuus HOM05D002674 ORTHO05D008041 9.9e-34 146.7 105 71.4
RcHm_v2.0_Chr6g0293971 Rosa chinensis HOM05D002674 ORTHO05D008041 1.3e-33 146.4 103 74.8
TWI14G1447 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 1.3e-33 146.4 105 73.3
Atru.chr7.1564 Acer truncatum HOM05D002674 ORTHO05D008041 2.2e-33 145.6 103 73.8
Hund18156 Selenicereus undatus HOM05D002674 ORTHO05D008041 2.9e-33 145.2 99 73.7
MSTRG.21632 Avicennia marina HOM05D002674 ORTHO05D008041 3.8e-33 144.8 104 71.2
SGA_v2.0_scaffold2G01395 Striga asiatica HOM05D002674 ORTHO05D008041 4.9e-33 144.4 101 73.3
Sabra02G0154500 Salix brachista HOM05D002674 ORTHO05D008041 1.4e-32 142.9 99 73.7
Dinv19696 Davidia involucrata HOM05D002674 ORTHO05D008041 2.4e-32 142.1 98 73.5
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 2.4e-32 142.1 105 71.4
FvH4_2g25692 Fragaria vesca HOM05D002674 ORTHO05D008041 2.4e-32 142.1 103 72.8
MD11G1310400 Malus domestica HOM05D002674 ORTHO05D008041 2.4e-32 142.1 105 69.5
CiPaw.07G108500 Carya illinoinensis HOM05D002674 ORTHO05D008041 5.4e-32 141.0 102 71.6
TAR636G2182 Trochodendron aralioides HOM05D002674 ORTHO05D008041 7.1e-32 140.6 101 71.3
AUR62033146 Chenopodium quinoa HOM05D002674 ORTHO05D008041 1.2e-31 139.8 105 67.6
FvH4_3g17380 Fragaria vesca HOM05D002674 ORTHO05D008041 1.2e-31 139.8 99 72.7
FAN11G2206 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.2e-31 139.8 99 72.7
FAN21G2416 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.2e-31 139.8 99 72.7
CDE12G0521 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 1.6e-31 139.4 100 73.0
ClCG10G010910 Citrullus lanatus HOM05D002674 ORTHO05D008041 1.6e-31 139.4 101 70.3
EL10Ac7g17468 Beta vulgaris HOM05D002674 ORTHO05D008041 2.1e-31 139.0 105 66.7
Migut.D00216 Erythranthe guttata HOM05D002674 ORTHO05D008041 2.1e-31 139.0 98 72.4
MBI19_g25355_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D008041 2.1e-31 139.0 98 75.5
FAN16G1943 Fragaria x ananassa HOM05D002674 ORTHO05D008041 3.5e-31 138.3 99 71.7
FAN25G1445 Fragaria x ananassa HOM05D002674 ORTHO05D008041 3.5e-31 138.3 99 72.7
AUR62008625 Chenopodium quinoa HOM05D002674 ORTHO05D008041 4.6e-31 137.9 105 66.7
CsaV3_4G000790 Cucumis sativus L. HOM05D002674 ORTHO05D008041 4.6e-31 137.9 99 71.7
CANSAT25G0502 Cannabis sativa HOM05D002674 ORTHO05D008041 6.0e-31 137.5 103 69.9
PGR044G1069 Punica granatum HOM05D002674 ORTHO05D008041 6.0e-31 137.5 100 72.0
Actinidia32214 Actinidia chinensis HOM05D002674 ORTHO05D008041 7.8e-31 137.1 104 68.3
Sed0019690 Sechium edule HOM05D002674 ORTHO05D008041 1.0e-30 136.7 103 68.0
GSVIVG01028011001 Vitis vinifera HOM05D002674 ORTHO05D008041 1.3e-30 136.3 98 73.5
MELO3C017957.2 Cucumis melo HOM05D002674 ORTHO05D008041 1.7e-30 136.0 99 70.7
Eucgr.H01115 Eucalyptus grandis HOM05D002674 ORTHO05D008041 3.0e-30 135.2 104 68.3
CSS0018179 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D008041 5.1e-30 134.4 101 67.3
Haze_04934 Corylus avellana HOM05D002674 ORTHO05D008041 8.7e-30 133.7 102 65.7
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 1.1e-29 133.3 99 69.7
MD03G1287900 Malus domestica HOM05D002674 ORTHO05D008041 1.1e-29 133.3 105 65.7
QL12p028510 Quercus lobata HOM05D002674 ORTHO05D008041 1.1e-29 133.3 101 69.3
Nn3g21482 Nelumbo nucifera HOM05D002674 ORTHO05D008041 1.5e-29 132.9 97 72.2
Cfa005915 Carpinus fangiana HOM05D002674 ORTHO05D008041 3.3e-29 131.7 102 64.7
Peaxi162Scf00001g00445 Petunia axillaris HOM05D002674 ORTHO05D008041 1.3e-28 129.8 101 64.4
VMungo0720G1979 Vigna mungo HOM05D002674 ORTHO05D008041 1.3e-28 129.8 104 66.3
CAN.G472.1 Capsicum annuum HOM05D002674 ORTHO05D008041 2.1e-28 129.0 101 64.4
Solyc09g075100.3 Solanum lycopersicum HOM05D002674 ORTHO05D008041 2.1e-28 129.0 101 64.4
Sopen09g029920 Solanum pennellii HOM05D002674 ORTHO05D008041 2.1e-28 129.0 101 64.4
PGSC0003DMG400011376 Solanum tuberosum HOM05D002674 ORTHO05D008041 3.6e-28 128.3 101 64.4
Aqoxy5G00753 Aquilegia oxysepala HOM05D002674 ORTHO05D008041 4.8e-28 127.9 101 67.3
Nitab4.5_0001879g0010 Nicotiana tabacum HOM05D002674 ORTHO05D008041 4.8e-28 127.9 99 65.7
Nitab4.5_0008207g0030 Nicotiana tabacum HOM05D002674 ORTHO05D008041 4.8e-28 127.9 99 65.7
Phvul.007G146200 Phaseolus vulgaris HOM05D002674 ORTHO05D008041 4.8e-28 127.9 104 65.4
PGR119G0614 Punica granatum HOM05D002674 ORTHO05D008041 4.8e-28 127.9 102 67.6
unitig_61.g26303 Utricularia gibba HOM05D002674 ORTHO05D008041 6.2e-28 127.5 101 64.4
ATR0796G030 Amborella trichopoda HOM05D002674 ORTHO05D008041 8.1e-28 127.1 104 62.5
Psat6g166360 Pisum sativum HOM05D002674 ORTHO05D008041 1.1e-27 126.7 100 65.0
Ca_10338_v3 Cicer arietinum L. HOM05D002674 ORTHO05D008041 1.4e-27 126.3 104 64.4
Rhsim13G0010400 Rhododendron simsii HOM05D002674 ORTHO05D008041 1.4e-27 126.3 115 61.7
C08p37560 Brassica napus HOM05D002674 ORTHO05D008041 3.1e-27 125.2 74 90.5
Lalb_Chr21g0306851 Lupinus albus HOM05D002674 ORTHO05D008041 4.0e-27 124.8 100 66.0
arahy.Tifrunner.gnm1.ann1.9NAT9F Arachis hypogaea HOM05D002674 ORTHO05D008041 9.0e-27 123.6 105 66.7
arahy.Tifrunner.gnm1.ann1.UV7MYU Arachis hypogaea HOM05D002674 ORTHO05D008041 9.0e-27 123.6 105 66.7
Lj5g0008305 Lotus japonicus HOM05D002674 ORTHO05D008041 1.5e-26 122.9 106 61.3
PSO210G6076 Papaver somniferum HOM05D002674 ORTHO05D008041 2.6e-26 122.1 99 63.6
PSO832G1306 Papaver somniferum HOM05D002674 ORTHO05D008041 3.4e-26 121.7 99 64.6
Medtr1g088550 Medicago truncatula HOM05D002674 ORTHO05D008041 7.6e-26 120.6 104 59.6
Glyma.10G018500 Glycine max HOM05D002674 ORTHO05D008041 9.9e-26 120.2 102 61.8
Sabra14G0096400 Salix brachista HOM05D002674 ORTHO05D008041 9.9e-26 120.2 101 63.4
Oeu010670.1 Olea europaea HOM05D002674 ORTHO05D008041 8.4e-25 117.1 102 61.8
Gorai.004G089900 Gossypium raimondii HOM05D002674 ORTHO05D008041 1.4e-24 116.3 80 78.8
SalBow5G2922 Salvia bowleyana HOM05D002674 ORTHO05D008041 1.4e-24 116.3 82 75.6
TPR.G34008 Trifolium pratense HOM05D002674 ORTHO05D008041 1.9e-24 115.9 104 59.6
SalBow3G1515 Salvia bowleyana HOM05D002674 ORTHO05D008041 3.2e-24 115.2 82 73.2
Duzib138G1033 Durio zibethinus HOM05D002674 ORTHO05D008041 7.1e-24 114.0 82 74.4
Lsat_1_v5_gn_9_5640 Lactuca sativa HOM05D002674 ORTHO05D008643 1.2e-23 113.2 79 73.4
SEGI_38702 Sequoiadendron giganteum HOM05D002674 ORTHO05D008041 7.9e-23 110.5 99 58.6
Sc24g0003780 Simmondsia chinensis HOM05D002674 ORTHO05D008041 7.9e-23 110.5 80 72.5
vmacro02452 Vaccinium macrocarpon HOM05D002674 ORTHO05D008041 1.0e-22 110.2 155 45.2
CDE01G0164 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 5.1e-22 107.8 83 69.9
Haze_04957 Corylus avellana HOM05D002674 ORTHO05D008041 3.3e-21 105.1 80 68.8
Lalb_Chr02g0143261 Lupinus albus HOM05D000266 ORTHO05D008041 1.3e-20 103.2 82 64.6
Ah.15g093210 Amaranthus hybridus HOM05D002674 ORTHO05D008041 2.8e-20 102.1 85 65.9
Os05g0363600 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D008041 6.9e-19 97.4 100 56.0
Mapoly0061s0038 Marchantia polymorpha HOM05D002674 ORTHO05D008041 9.0e-19 97.1 101 49.5
Hma1.2p1_0491F.1_g164520 Hydrangea macrophylla HOM05D002674 ORTHO05D008041 1.5e-18 96.3 78 64.1
BcaC07g40760 Brassica carinata HOM05D002674 ORTHO05D008041 2.0e-18 95.9 52 92.3
BolC8t51336H Brassica oleracea HOM05D002674 ORTHO05D008041 2.0e-18 95.9 52 92.3
Pp3c9_7930 Physcomitrium patens HOM05D002674 ORTHO05D008041 3.4e-18 95.1 90 54.4
Zm00001eb346590 Zea mays HOM05D002674 ORTHO05D008041 5.8e-18 94.4 100 55.0
DCAR_002831 Daucus carota HOM05D000067 ORTHO05D001807 1.3e-17 93.2 76 67.1
HPP92_013721 Vanilla planifolia HOM05D002674 ORTHO05D008041 2.2e-17 92.4 79 59.5
AagrBONN_evm.TU.Sc2ySwM_362.373 Anthoceros agrestis HOM05D002674 ORTHO05D008041 4.9e-17 91.3 96 52.1
Glyma.02G018200 Glycine max HOM05D002674 ORTHO05D008041 1.1e-16 90.1 79 62.0
RcHm_v2.0_Chr2g0146991 Rosa chinensis HOM05D002674 ORTHO05D008041 6.9e-11 70.9 54 68.5
CBR_g24042 Chara braunii HOM05D002674 ORTHO05D008041 4.5e-10 68.2 74 48.6
Peaxi162Scf00545g00027 Petunia axillaris HOM05D002674 ORTHO05D008041 1.6e-07 59.7 51 52.9
MCO07G465 Micromonas commoda HOM05D002674 ORTHO05D008041 3.5e-07 58.5 79 40.5
Cre07.g332150 Chlamydomonas reinhardtii HOM05D002674 ORTHO05D008041 5.1e-06 54.7 89 38.2
PSO832G3862 Papaver somniferum HOM05D001297 ORTHO05D001135 5.1e-06 54.7 79 43.0


User provided reference genes

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