Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p66010 Brassica napus HOM05D000499 ORTHO05D011058 5.6e-68 260.8 128 100.0
BraA03t15657Z Brassica rapa HOM05D000499 ORTHO05D011058 7.4e-60 233.8 115 100.0
BraSC35t45995Z Brassica rapa HOM05D005048 ORTHO05D006420 1.2e-41 173.3 142 63.4
C09p39260 Brassica napus HOM05D000499 ORTHO05D007471 2.6e-41 172.2 142 62.7
BolC9t56805H Brassica oleracea HOM05D000499 ORTHO05D007471 2.6e-41 172.2 142 62.7
A03p16470 Brassica napus HOM05D000499 ORTHO05D007471 4.5e-41 171.4 142 62.7
A10p08040 Brassica napus HOM05D005048 ORTHO05D006420 4.5e-41 171.4 142 62.7
BraA03t10936Z Brassica rapa HOM05D000499 ORTHO05D007471 4.5e-41 171.4 142 62.7
BcaC01g06051 Brassica carinata HOM05D000499 ORTHO05D007471 1.4e-39 166.4 142 60.6
C03p19360 Brassica napus HOM05D000499 ORTHO05D007471 1.4e-39 166.4 142 60.6
BolC3t14322H Brassica oleracea HOM05D000499 ORTHO05D007471 1.4e-39 166.4 142 60.6
Thhalv10013482m.g Eutrema salsugineum HOM05D000499 ORTHO05D007471 1.2e-38 163.3 146 58.2
Sp6g13080 Schrenkiella parvula HOM05D000499 ORTHO05D007471 1.6e-38 162.9 145 57.9
BcaB08g36611 Brassica carinata HOM05D000499 ORTHO05D011058 1.0e-37 160.2 132 65.9
BcaNung00234 Brassica carinata HOM05D000499 ORTHO05D011058 2.3e-37 159.1 120 70.8
BcaB02g10575 Brassica carinata HOM05D000499 ORTHO05D011058 2.5e-36 155.6 120 69.2
Carub.0008s0636 Capsella rubella HOM05D000499 ORTHO05D007471 4.3e-36 154.8 145 55.2
AT5G42660 Arabidopsis thaliana HOM05D000499 ORTHO05D007471 5.7e-36 154.5 145 54.5
AL8G18540 Arabidopsis lyrata HOM05D000499 ORTHO05D007471 1.7e-35 152.9 145 53.1
Aa31LG9G12730 Aethionema arabicum HOM05D000499 ORTHO05D007471 5.3e-34 147.9 145 54.5
BcaC01g02034 Brassica carinata HOM05D000499 ORTHO05D011058 2.5e-31 139.0 117 65.8
THA.LOC104803394 Tarenaya hassleriana HOM05D000499 ORTHO05D007471 3.6e-30 135.2 136 51.5
A09p42850 Brassica napus HOM05D000499 ORTHO05D011058 1.8e-29 132.9 80 83.8
Atru.chr13.570 Acer truncatum HOM05D000499 ORTHO05D007471 7.4e-28 127.5 134 49.3
vmacro21599 Vaccinium macrocarpon HOM05D000499 ORTHO05D007471 7.4e-28 127.5 149 45.0
Ciclev10003605m.g Citrus clementina HOM05D000499 ORTHO05D007471 1.7e-27 126.3 136 47.1
Medtr1g021670 Medicago truncatula HOM05D000499 ORTHO05D007471 2.2e-27 125.9 136 46.3
Cfa018454 Carpinus fangiana HOM05D000499 ORTHO05D007471 3.7e-27 125.2 149 44.3
Dinv36028 Davidia involucrata HOM05D000499 ORTHO05D007471 3.7e-27 125.2 149 43.6
Oeu015605.2 Olea europaea HOM05D000499 ORTHO05D007471 4.8e-27 124.8 137 45.3
Hma1.2p1_0584F.1_g183470 Hydrangea macrophylla HOM05D000499 ORTHO05D007471 6.3e-27 124.4 134 47.8
CANSAT56G4116 Cannabis sativa HOM05D000499 ORTHO05D007471 8.2e-27 124.0 149 44.3
SalBow8G5466 Salvia bowleyana HOM05D000499 ORTHO05D007471 8.2e-27 124.0 149 45.0
Lj4A47T76 Lonicera japonica HOM05D000499 ORTHO05D007471 1.1e-26 123.6 145 44.8
Psat6g010720 Pisum sativum HOM05D000499 ORTHO05D007471 1.1e-26 123.6 136 45.6
RcHm_v2.0_Chr1g0318301 Rosa chinensis HOM05D000499 ORTHO05D007471 1.1e-26 123.6 136 47.1
TAR376G0340 Trochodendron aralioides HOM05D000499 ORTHO05D007471 1.1e-26 123.6 146 43.2
CiPaw.15G071000 Carya illinoinensis HOM05D000499 ORTHO05D007471 1.4e-26 123.2 149 43.6
Dinv39368 Davidia involucrata HOM05D000499 ORTHO05D007471 1.4e-26 123.2 139 43.9
HanXRQChr09g0268401 Helianthus annuus HOM05D000499 ORTHO05D007471 1.4e-26 123.2 144 45.8
Oeu004672.1 Olea europaea HOM05D000499 ORTHO05D007471 1.4e-26 123.2 137 45.3
Haze_17612 Corylus avellana HOM05D000499 ORTHO05D007471 2.4e-26 122.5 147 44.2
PGR083G1137 Punica granatum HOM05D000499 ORTHO05D007471 3.1e-26 122.1 136 46.3
Actinidia15289 Actinidia chinensis HOM05D000499 ORTHO05D007471 4.1e-26 121.7 149 43.0
Ca_13326_v3 Cicer arietinum L. HOM05D000499 ORTHO05D007471 4.1e-26 121.7 136 47.8
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 4.1e-26 121.7 149 43.0
MD02G1301200 Malus domestica HOM05D000499 ORTHO05D007471 4.1e-26 121.7 149 43.6
CiPaw.05G060300 Carya illinoinensis HOM05D000499 ORTHO05D007471 5.3e-26 121.3 149 42.3
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 5.3e-26 121.3 142 43.7
Lalb_Chr22g0355361 Lupinus albus HOM05D000499 ORTHO05D007471 5.3e-26 121.3 137 46.7
SGA_v2.0_scaffold14G07051 Striga asiatica HOM05D000499 ORTHO05D007471 5.3e-26 121.3 158 42.4
Cpa.g.sc64.37 Carica papaya HOM05D000499 ORTHO05D007471 7.0e-26 120.9 149 45.0
ECA232G3898 Erigeron canadensis HOM05D000499 ORTHO05D007471 7.0e-26 120.9 144 44.4
Prupe.2G023300 Prunus persica HOM05D000499 ORTHO05D007471 9.1e-26 120.6 149 42.3
FAN10G3758 Fragaria x ananassa HOM05D000499 ORTHO05D007471 1.2e-25 120.2 133 48.1
Glyma.14G078200 Glycine max HOM05D000499 ORTHO05D007471 1.2e-25 120.2 137 46.7
FAN01G0570 Fragaria x ananassa HOM05D000499 ORTHO05D007471 1.5e-25 119.8 135 47.4
TWI12G0811 Tripterygium wilfordii HOM05D000499 ORTHO05D007471 1.5e-25 119.8 148 43.2
arahy.Tifrunner.gnm1.ann1.LS1NQA Arachis hypogaea HOM05D000499 ORTHO05D007471 2.0e-25 119.4 136 44.1
arahy.Tifrunner.gnm1.ann1.UQWD9J Arachis hypogaea HOM05D000499 ORTHO05D007471 2.0e-25 119.4 136 44.1
Sc02g0006640 Simmondsia chinensis HOM05D000499 ORTHO05D007471 2.0e-25 119.4 147 43.5
Thecc.08G020400 Theobroma cacao HOM05D000499 ORTHO05D007471 2.0e-25 119.4 150 45.3
TAR381G1236 Trochodendron aralioides HOM05D000499 ORTHO05D007471 2.0e-25 119.4 149 40.9
FAN03G3351 Fragaria x ananassa HOM05D000499 ORTHO05D007471 2.6e-25 119.0 135 47.4
TPR.G15769 Trifolium pratense HOM05D000499 ORTHO05D007471 2.6e-25 119.0 136 44.9
FvH4_7g01740 Fragaria vesca HOM05D000499 ORTHO05D007471 3.5e-25 118.6 136 47.1
FAN06G3702 Fragaria x ananassa HOM05D000499 ORTHO05D007471 3.5e-25 118.6 136 47.1
Lsat_1_v5_gn_4_123041 Lactuca sativa HOM05D000499 ORTHO05D007471 3.5e-25 118.6 144 43.8
MD07G1022800 Malus domestica HOM05D000499 ORTHO05D007471 4.5e-25 118.2 149 40.9
TWI36G1262 Tripterygium wilfordii HOM05D000499 ORTHO05D007471 4.5e-25 118.2 151 40.4
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 7.7e-25 117.5 149 40.9
Haze_02428 Corylus avellana HOM05D000499 ORTHO05D007471 7.7e-25 117.5 142 40.8
Phvul.001G017600 Phaseolus vulgaris HOM05D000499 ORTHO05D007471 7.7e-25 117.5 150 43.3
Nn5g29461 Nelumbo nucifera HOM05D000499 ORTHO05D007471 1.0e-24 117.1 137 44.5
PSO541G2319 Papaver somniferum HOM05D000499 ORTHO05D007471 1.0e-24 117.1 146 43.8
Duzib147G0278 Durio zibethinus HOM05D000499 ORTHO05D007471 1.3e-24 116.7 131 48.1
Lj5g0012472 Lotus japonicus HOM05D000499 ORTHO05D007471 1.3e-24 116.7 136 44.9
PSO675G5635 Papaver somniferum HOM05D000499 ORTHO05D007471 1.3e-24 116.7 146 43.2
MSTRG.22285 Avicennia marina HOM05D000499 ORTHO05D007471 1.7e-24 116.3 147 43.5
VMungo0647G0317 Vigna mungo HOM05D000499 ORTHO05D007471 1.7e-24 116.3 137 45.3
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 1.7e-24 116.3 149 40.3
Cfa004969 Carpinus fangiana HOM05D000499 ORTHO05D007471 2.2e-24 115.9 142 41.5
Glyma.17G247200 Glycine max HOM05D000499 ORTHO05D007471 2.2e-24 115.9 137 44.5
Gohir.D06G010400 Gossypium hirsutum HOM05D000499 ORTHO05D007471 2.2e-24 115.9 150 43.3
Gorai.010G013300 Gossypium raimondii HOM05D000499 ORTHO05D007471 2.2e-24 115.9 150 43.3
Duzib187G1353 Durio zibethinus HOM05D000499 ORTHO05D007471 2.9e-24 115.5 150 43.3
Gohir.A06G012900 Gossypium hirsutum HOM05D000499 ORTHO05D007471 2.9e-24 115.5 150 42.7
HanXRQChr16g0507941 Helianthus annuus HOM05D000499 ORTHO05D007471 3.8e-24 115.2 130 44.6
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 5.0e-24 114.8 151 43.7
Peaxi162Scf00280g00811 Petunia axillaris HOM05D000499 ORTHO05D007471 5.0e-24 114.8 136 44.9
Manes.05G164700 Manihot esculenta HOM05D000499 ORTHO05D007471 1.1e-23 113.6 147 42.2
Peaxi162Scf01064g00263 Petunia axillaris HOM05D000499 ORTHO05D007471 1.9e-23 112.8 136 44.1
Potri.002G149900 Populus trichocarpa HOM05D000499 ORTHO05D007471 1.9e-23 112.8 146 41.1
RcHm_v2.0_Chr4g0418501 Rosa chinensis HOM05D000499 ORTHO05D007471 1.9e-23 112.8 134 44.0
MBI16_g13161_MAGBIO Magnolia biondii HOM05D000499 ORTHO05D007471 2.5e-23 112.5 148 39.2
QL02p007186 Quercus lobata HOM05D000499 ORTHO05D007471 3.2e-23 112.1 135 43.0
Sabra02G0118600 Salix brachista HOM05D000499 ORTHO05D007471 3.2e-23 112.1 136 41.9
MSTRG.28296 Avicennia marina HOM05D000499 ORTHO05D007471 4.2e-23 111.7 148 40.5
Duzib132G0069 Durio zibethinus HOM05D000499 ORTHO05D007471 4.2e-23 111.7 142 40.1
Aqoxy2G03993 Aquilegia oxysepala HOM05D000499 ORTHO05D007471 7.2e-23 110.9 127 45.7
Dinv23563 Davidia involucrata HOM05D000370 ORTHO05D001335 7.2e-23 110.9 133 42.9
Hund12053 Selenicereus undatus HOM05D000499 ORTHO05D007471 1.2e-22 110.2 136 44.1
Zm00001eb213920 Zea mays HOM05D000499 ORTHO05D007471 1.2e-22 110.2 131 40.5
Eucgr.F04207 Eucalyptus grandis HOM05D000499 ORTHO05D007471 1.6e-22 109.8 144 38.9
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 2.1e-22 109.4 133 42.1
Ah.07g208480 Amaranthus hybridus HOM05D000499 ORTHO05D007471 2.7e-22 109.0 145 43.4
ClCG05G019250 Citrullus lanatus HOM05D000499 ORTHO05D007471 4.7e-22 108.2 134 43.3
Actinidia22576 Actinidia chinensis HOM05D000499 ORTHO05D011058 6.1e-22 107.8 128 43.8
BolC7t40678H Brassica oleracea HOM05D000499 ORTHO05D011058 6.1e-22 107.8 66 81.8
Sed0006245 Sechium edule HOM05D000499 ORTHO05D007471 6.1e-22 107.8 136 43.4
C01p38550 Brassica napus HOM05D026149 ORTHO05D011058 8.0e-22 107.5 134 49.3
CSS0041102 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D007471 8.0e-22 107.5 134 41.8
CAN.G371.117 Capsicum annuum HOM05D000499 ORTHO05D007471 1.0e-21 107.1 135 42.2
Nn1g03995 Nelumbo nucifera HOM05D000499 ORTHO05D007471 1.0e-21 107.1 131 42.0
Nitab4.5_0009288g0030 Nicotiana tabacum HOM05D000499 ORTHO05D007471 1.8e-21 106.3 135 40.7
ATR0733G207 Amborella trichopoda HOM05D000499 ORTHO05D007471 2.3e-21 105.9 133 42.9
BolC1t03815H Brassica oleracea HOM05D026149 ORTHO05D011058 6.7e-21 104.4 128 51.6
arahy.Tifrunner.gnm1.ann1.WE07RT Arachis hypogaea HOM05D000499 ORTHO05D011058 8.8e-21 104.0 121 44.6
EL10Ac1g01746 Beta vulgaris HOM05D000499 ORTHO05D007471 8.8e-21 104.0 134 44.0
AUR62040075 Chenopodium quinoa HOM05D000499 ORTHO05D007471 1.5e-20 103.2 137 43.1
Nitab4.5_0000110g0060 Nicotiana tabacum HOM05D000499 ORTHO05D007471 1.5e-20 103.2 134 41.0
PGSC0003DMG400016885 Solanum tuberosum HOM05D000499 ORTHO05D007471 1.5e-20 103.2 135 41.5
Os03g0769050 Oryza sativa ssp. japonica HOM05D000499 ORTHO05D007471 2.0e-20 102.8 136 39.0
Zm00001eb153240 Zea mays HOM05D000499 ORTHO05D007471 2.6e-20 102.4 139 38.8
AUR62033863 Chenopodium quinoa HOM05D000499 ORTHO05D007471 3.3e-20 102.1 137 43.1
arahy.Tifrunner.gnm1.ann1.527VTZ Arachis hypogaea HOM05D000499 ORTHO05D007471 4.4e-20 101.7 67 64.2
Sed0012944 Sechium edule HOM05D000499 ORTHO05D007471 4.4e-20 101.7 136 40.4
CsaV3_3G044830 Cucumis sativus L. HOM05D000499 ORTHO05D007471 5.7e-20 101.3 133 41.4
arahy.Tifrunner.gnm1.ann1.HC27T5 Arachis hypogaea HOM05D000499 ORTHO05D007471 7.4e-20 100.9 67 64.2
Gohir.D07G165675 Gossypium hirsutum HOM05D000499 ORTHO05D011058 7.4e-20 100.9 62 64.5
Sopen04g033350 Solanum pennellii HOM05D000499 ORTHO05D007471 7.4e-20 100.9 135 40.0
CDE01G0176 Ceratophyllum demersum HOM05D000499 ORTHO05D007471 9.7e-20 100.5 136 38.2
SHI18077 Sapria himalayana HOM05D000499 ORTHO05D007471 1.3e-19 100.1 180 32.2
Solyc04g079770.3 Solanum lycopersicum HOM05D000499 ORTHO05D007471 1.3e-19 100.1 135 40.0
Gohir.D11G191020 Gossypium hirsutum HOM05D000499 ORTHO05D011058 3.7e-19 98.6 62 64.5
Gohir.D11G212066 Gossypium hirsutum HOM05D000499 ORTHO05D011058 3.7e-19 98.6 62 64.5
CDE02G3431 Ceratophyllum demersum HOM05D000370 ORTHO05D001335 8.2e-19 97.4 71 57.7
Gohir.D10G077900 Gossypium hirsutum HOM05D003897 ORTHO05D011058 1.8e-18 96.3 62 62.9
Gohir.A05G133850 Gossypium hirsutum HOM05D000499 ORTHO05D011058 2.4e-18 95.9 56 69.6
Gohir.A06G035901 Gossypium hirsutum HOM05D000499 ORTHO05D011058 2.4e-18 95.9 56 69.6
Gohir.A09G088301 Gossypium hirsutum HOM05D000499 ORTHO05D011058 2.4e-18 95.9 56 69.6
Gohir.A12G143350 Gossypium hirsutum HOM05D000499 ORTHO05D011058 2.4e-18 95.9 56 69.6
BcaC06g36570 Brassica carinata HOM05D000499 ORTHO05D011058 3.1e-18 95.5 56 83.9
Gorai.003G067600 Gossypium raimondii HOM05D000499 ORTHO05D011058 4.1e-18 95.1 62 61.3
Os01g0749100 Oryza sativa ssp. japonica HOM05D000499 ORTHO05D007471 5.3e-18 94.7 67 59.7
Gohir.D01G051366 Gossypium hirsutum HOM05D000499 ORTHO05D011058 1.2e-17 93.6 60 63.3
Gohir.D08G138060 Gossypium hirsutum HOM05D000499 ORTHO05D011058 1.2e-17 93.6 60 63.3
SEGI_01316 Sequoiadendron giganteum HOM05D000499 ORTHO05D007471 1.2e-17 93.6 134 35.8
SEGI_20351 Sequoiadendron giganteum HOM05D000499 ORTHO05D007471 1.2e-17 93.6 134 35.8
MSTRG.9895 Avicennia marina HOM05D000499 ORTHO05D007471 1.0e-16 90.5 67 56.7
AagrBONN_evm.TU.Sc2ySwM_228.4977 Anthoceros agrestis HOM05D000499 ORTHO05D007471 1.7e-16 89.7 139 37.4
MELO3C003891.2 Cucumis melo HOM05D000499 ORTHO05D007471 1.7e-16 89.7 149 37.6
HanXRQChr09g0262371 Helianthus annuus HOM05D000499 ORTHO05D007471 1.1e-15 87.0 64 62.5
BraA05t20523Z Brassica rapa HOM05D000499 ORTHO05D027942 5.5e-15 84.7 117 49.6
Mapoly0024s0007 Marchantia polymorpha HOM05D000499 ORTHO05D007471 5.5e-15 84.7 129 38.8
Pp3c14_23720 Physcomitrium patens HOM05D000499 ORTHO05D007471 9.4e-15 84.0 115 42.6
BcaB02g07334 Brassica carinata HOM05D000499 ORTHO05D011058 2.1e-14 82.8 78 59.0
Gorai.011G198900 Gossypium raimondii HOM05D000499 ORTHO05D011058 2.1e-14 82.8 50 66.0
BcaNung03707 Brassica carinata HOM05D000499 ORTHO05D011058 1.0e-13 80.5 46 78.3
SMO351G0006 Selaginella moellendorffii HOM05D000499 ORTHO05D007471 1.8e-13 79.7 67 50.7
Gohir.D08G062240 Gossypium hirsutum HOM05D000499 ORTHO05D011058 8.8e-13 77.4 45 68.9
AL4G18580 Arabidopsis lyrata HOM05D000499 ORTHO05D011058 4.4e-12 75.1 47 66.0
Gorai.001G057300 Gossypium raimondii HOM05D000499 ORTHO05D011058 4.4e-12 75.1 45 66.7
C03p69280 Brassica napus HOM05D055006 ORTHO05D011058 8.3e-11 70.9 41 78.0
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 4.5e-09 65.1 35 74.3
C07p02820 Brassica napus HOM05D000499 ORTHO05D027942 7.7e-09 64.3 56 55.4
Gohir.A08G008650 Gossypium hirsutum HOM05D000499 ORTHO05D011058 2.5e-07 59.3 35 65.7


User provided reference genes

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