Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 0.0e+00 1077.8 549 100.0
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 0.0e+00 1077.8 549 100.0
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 5.4e-293 1010.4 550 94.5
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 1.7e-291 1005.4 550 94.0
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 1.7e-291 1005.4 550 94.0
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 2.9e-270 934.9 564 84.0
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 9.6e-266 919.8 564 83.2
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 2.8e-265 918.3 564 83.2
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 1.7e-262 909.1 560 82.0
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 8.1e-257 890.2 528 86.7
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 1.1e-256 889.8 560 81.2
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 1.2e-252 876.3 564 79.6
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 1.4e-229 799.7 561 71.8
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 1.0e-219 766.9 572 69.2
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 1.9e-197 693.0 576 61.5
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 1.5e-194 683.3 576 59.9
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 7.0e-192 674.5 575 61.2
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 1.1e-189 667.2 576 58.9
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.2e-188 663.7 576 58.9
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 3.6e-188 662.1 577 60.7
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 1.0e-187 660.6 576 59.0
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 4.0e-187 658.7 577 59.1
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 3.4e-186 655.6 586 59.4
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 2.2e-185 652.9 577 59.3
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 3.7e-185 652.1 578 59.3
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.4e-184 650.2 575 58.6
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 3.1e-184 649.0 572 59.6
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 3.1e-184 649.0 576 58.7
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 7.0e-184 647.9 578 59.0
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 9.2e-184 647.5 574 57.1
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 4.5e-183 645.2 578 58.8
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.0e-182 644.0 578 58.5
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 1.1e-181 640.6 578 58.3
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.5e-181 640.2 578 58.5
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 1.9e-181 639.8 577 58.2
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.2e-180 637.1 574 56.1
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 1.6e-180 636.7 574 58.4
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 2.1e-180 636.3 578 56.7
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 2.1e-180 636.3 574 59.8
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 2.8e-180 636.0 568 58.3
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 2.8e-180 636.0 578 58.1
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 2.8e-180 636.0 576 60.1
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 1.8e-179 633.3 573 55.8
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 1.8e-179 633.3 578 57.1
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.2e-178 630.6 577 58.8
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 1.2e-178 630.6 575 56.9
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 9.8e-178 627.5 574 56.1
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 1.3e-177 627.1 566 58.3
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 1.3e-177 627.1 576 56.8
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 6.4e-177 624.8 577 57.7
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 8.3e-177 624.4 575 57.7
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 3.2e-176 622.5 574 56.6
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 4.1e-176 622.1 595 55.5
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 7.0e-176 621.3 574 56.1
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 9.2e-176 620.9 571 57.3
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 1.6e-175 620.2 566 57.8
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 7.8e-175 617.8 563 57.5
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 1.0e-174 617.5 605 54.5
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 3.0e-174 615.9 569 55.2
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 6.6e-174 614.8 574 54.5
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 8.6e-174 614.4 579 57.0
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 1.1e-173 614.0 568 56.2
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 3.3e-173 612.5 576 56.8
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 4.3e-173 612.1 570 56.1
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 4.3e-173 612.1 577 56.0
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 1.2e-172 610.5 577 55.3
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.6e-172 610.1 571 56.6
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 4.7e-172 608.6 571 55.0
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 5.2e-171 605.1 572 55.1
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 8.9e-171 604.4 569 55.2
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 2.6e-170 602.8 577 55.5
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 4.4e-170 602.1 575 54.8
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 1.4e-168 597.0 575 54.8
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 9.2e-168 594.3 567 54.9
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 3.5e-167 592.4 575 54.3
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 1.6e-164 583.6 577 55.5
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 3.1e-163 579.3 576 53.8
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 8.9e-163 577.8 606 52.5
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 5.1e-158 562.0 573 51.5
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 3.2e-152 542.7 647 47.4
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.7e-150 537.0 605 50.1
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 1.5e-149 533.9 568 48.9
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 5.6e-149 531.9 528 54.7
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 5.6e-149 531.9 576 49.8
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 6.9e-147 525.0 547 53.2
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 2.6e-146 523.1 496 56.5
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 4.2e-144 515.8 510 53.3
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 2.7e-143 513.1 679 43.4
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 2.3e-142 510.0 515 51.7
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 4.0e-139 499.2 553 48.3
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 3.2e-136 489.6 504 53.4
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 3.0e-134 483.0 428 58.6
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 2.9e-129 466.5 394 59.9
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 2.5e-128 463.4 476 52.7
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 2.7e-127 459.9 416 57.9
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.5e-125 454.1 438 53.0
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 2.6e-122 443.4 552 43.3
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 7.9e-119 431.8 574 43.2
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 3.7e-116 422.9 394 54.8
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 3.2e-112 409.8 483 49.7
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 1.8e-110 404.1 556 43.0
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 9.4e-104 381.7 368 55.7
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 2.1e-103 380.6 348 56.9
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 3.6e-103 379.8 604 37.3
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 5.1e-102 375.9 448 48.9
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.2e-100 370.5 469 45.6
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 1.4e-99 367.9 598 37.5
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 1.3e-97 361.3 285 61.1
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.0e-86 325.1 455 46.2
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 1.1e-56 225.3 244 47.1
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 4.0e-54 216.9 273 46.5
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 7.5e-53 212.6 212 53.3
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 2.7e-50 204.1 368 37.2
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 7.3e-48 196.1 466 30.0
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 7.8e-42 176.0 159 57.9
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 3.2e-35 154.1 115 71.3
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 3.2e-35 154.1 115 71.3
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 2.5e-32 144.4 95 70.5
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 5.8e-29 133.3 149 48.3
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 1.1e-27 129.0 375 30.9
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 1.6e-26 125.2 74 73.0
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 2.3e-25 121.3 460 23.3
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 1.1e-24 119.0 347 25.9
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 1.1e-24 119.0 133 48.1
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 1.9e-24 118.2 443 25.5
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 2.8e-23 114.4 133 47.4
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 1.1e-16 92.4 117 44.4
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 1.3e-15 89.0 52 73.1
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 3.7e-15 87.4 56 69.6
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 6.9e-14 83.2 74 56.8
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 1.3e-12 79.0 90 45.6
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.5e-11 74.7 81 49.4
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 6.0e-10 70.1 45 68.9
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.0e-09 69.3 81 48.1
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 1.8e-09 68.6 51 60.8
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 1.1e-06 59.3 141 35.5


User provided reference genes

Program Settings