Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p62800 Brassica napus HOM05D002044 ORTHO05D005337 7.2e-44 180.3 96 100.0
A01p04130 Brassica napus HOM05D002044 ORTHO05D005337 1.4e-31 139.4 80 92.5
C01p04500 Brassica napus HOM05D002044 ORTHO05D005337 1.4e-31 139.4 80 92.5
BolC1t00436H Brassica oleracea HOM05D002044 ORTHO05D005337 1.4e-31 139.4 80 92.5
BraA01t00402Z Brassica rapa HOM05D002044 ORTHO05D005337 1.4e-31 139.4 80 92.5
BcaNung04161 Brassica carinata HOM05D002044 ORTHO05D005337 3.2e-31 138.3 80 91.2
Sp7g32070 Schrenkiella parvula HOM05D002044 ORTHO05D005337 9.2e-31 136.7 80 90.0
Thhalv10026241m.g Eutrema salsugineum HOM05D002044 ORTHO05D005337 1.2e-30 136.3 80 90.0
BraA03t15355Z Brassica rapa HOM05D002044 ORTHO05D005337 2.5e-28 128.6 70 95.7
Aa31LG2G20360 Aethionema arabicum HOM05D002044 ORTHO05D005337 2.8e-27 125.2 81 84.0
Sp3g32230 Schrenkiella parvula HOM05D002044 ORTHO05D005337 8.0e-27 123.6 80 81.2
Thhalv10022846m.g Eutrema salsugineum HOM05D002044 ORTHO05D005337 1.4e-26 122.9 80 81.2
CARHR242500 Cardamine hirsuta HOM05D002044 ORTHO05D005337 8.9e-26 120.2 81 82.7
GSVIVG01037888001 Vitis vinifera HOM05D002044 ORTHO05D005337 2.0e-25 119.0 80 78.8
MD05G1093600 Malus domestica HOM05D002044 ORTHO05D005337 3.4e-25 118.2 80 78.8
AL5G14080 Arabidopsis lyrata HOM05D002044 ORTHO05D005337 4.4e-25 117.9 80 78.8
FvH4_2g04710 Fragaria vesca HOM05D002044 ORTHO05D005337 4.4e-25 117.9 80 77.5
FAN15G0361 Fragaria x ananassa HOM05D002044 ORTHO05D005337 4.4e-25 117.9 80 77.5
FAN20G2696 Fragaria x ananassa HOM05D002044 ORTHO05D005337 4.4e-25 117.9 80 77.5
RcHm_v2.0_Chr6g0254341 Rosa chinensis HOM05D002044 ORTHO05D005337 4.4e-25 117.9 80 77.5
Carub.0003s3323 Capsella rubella HOM05D002044 ORTHO05D005337 5.8e-25 117.5 80 78.8
Carub.0005s0334 Capsella rubella HOM05D002044 ORTHO05D005337 5.8e-25 117.5 80 78.8
Prupe.8G138300 Prunus persica HOM05D002044 ORTHO05D005337 5.8e-25 117.5 80 77.5
AL3G52920 Arabidopsis lyrata HOM05D002044 ORTHO05D005337 7.5e-25 117.1 80 78.8
AT2G18990 Arabidopsis thaliana HOM05D002044 ORTHO05D005337 7.5e-25 117.1 80 78.8
CiPaw.05G013900 Carya illinoinensis HOM05D002044 ORTHO05D005337 9.8e-25 116.7 80 76.2
FAN24G0835 Fragaria x ananassa HOM05D002044 ORTHO05D005337 9.8e-25 116.7 80 76.2
TAR625G0358 Trochodendron aralioides HOM05D002044 ORTHO05D005337 9.8e-25 116.7 80 77.5
arahy.Tifrunner.gnm1.ann1.E7DDSD Arachis hypogaea HOM05D002044 ORTHO05D005337 1.3e-24 116.3 80 73.8
arahy.Tifrunner.gnm1.ann1.JSZB3T Arachis hypogaea HOM05D002044 ORTHO05D005337 1.3e-24 116.3 80 73.8
Psat6g216480 Pisum sativum HOM05D002044 ORTHO05D005337 1.3e-24 116.3 80 75.0
Hund06300 Selenicereus undatus HOM05D002044 ORTHO05D005337 1.3e-24 116.3 80 77.5
AT3G25580 Arabidopsis thaliana HOM05D002044 ORTHO05D005337 1.7e-24 115.9 80 76.2
arahy.Tifrunner.gnm1.ann1.DB7NWR Arachis hypogaea HOM05D002044 ORTHO05D005337 2.2e-24 115.5 80 73.8
Manes.07G065600 Manihot esculenta HOM05D002044 ORTHO05D005337 2.2e-24 115.5 80 76.2
Nn1g04647 Nelumbo nucifera HOM05D002044 ORTHO05D005337 2.2e-24 115.5 80 76.2
TPR.G27108 Trifolium pratense HOM05D002044 ORTHO05D005337 2.2e-24 115.5 80 75.0
TPR.G34538 Trifolium pratense HOM05D002044 ORTHO05D005337 2.2e-24 115.5 80 75.0
Dinv42209 Davidia involucrata HOM05D002044 ORTHO05D005337 4.9e-24 114.4 80 75.0
AUR62010336 Chenopodium quinoa HOM05D002044 ORTHO05D005337 6.4e-24 114.0 80 72.5
Ca_11053_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005337 6.4e-24 114.0 95 66.3
Potri.001G297900 Populus trichocarpa HOM05D002044 ORTHO05D005337 6.4e-24 114.0 79 74.7
QL11p032343 Quercus lobata HOM05D002044 ORTHO05D005337 6.4e-24 114.0 80 76.2
Sabra16G0186700 Salix brachista HOM05D002044 ORTHO05D005337 6.4e-24 114.0 79 74.7
CAN.G1156.17 Capsicum annuum HOM05D002044 ORTHO05D005337 8.3e-24 113.6 80 73.8
FAN27G0061 Fragaria x ananassa HOM05D002044 ORTHO05D005337 8.3e-24 113.6 80 76.2
Dinv16042 Davidia involucrata HOM05D002044 ORTHO05D005337 1.1e-23 113.2 80 73.8
Medtr1g106955 Medicago truncatula HOM05D002044 ORTHO05D005337 1.9e-23 112.5 80 72.5
Potri.009G092700 Populus trichocarpa HOM05D002044 ORTHO05D005337 1.9e-23 112.5 80 72.5
Lj5A216T105 Lonicera japonica HOM05D002044 ORTHO05D005337 2.4e-23 112.1 80 71.2
THA.LOC104819545 Tarenaya hassleriana HOM05D002044 ORTHO05D005337 2.4e-23 112.1 80 72.5
HanXRQChr13g0407801 Helianthus annuus HOM05D002044 ORTHO05D005337 3.2e-23 111.7 80 75.0
MBI14_g09419_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005337 3.2e-23 111.7 80 72.5
MBI14_g22154_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005337 3.2e-23 111.7 80 72.5
Glyma.10G259900 Glycine max HOM05D002044 ORTHO05D005337 4.1e-23 111.3 80 71.2
Nn5g30477 Nelumbo nucifera HOM05D002044 ORTHO05D005337 4.1e-23 111.3 80 73.8
Sabra09G0071300 Salix brachista HOM05D002044 ORTHO05D005337 4.1e-23 111.3 79 72.2
Duzib248G0129 Durio zibethinus HOM05D002044 ORTHO05D005337 5.4e-23 110.9 80 71.2
HanXRQChr10g0288701 Helianthus annuus HOM05D002044 ORTHO05D005337 5.4e-23 110.9 80 73.8
Ah.01g018420 Amaranthus hybridus HOM05D002044 ORTHO05D005337 7.1e-23 110.5 80 71.2
MSTRG.20199 Avicennia marina HOM05D002044 ORTHO05D005337 7.1e-23 110.5 80 71.2
COL.COLO4_32562 Corchorus olitorius HOM05D002044 ORTHO05D005337 9.2e-23 110.2 80 72.5
CsaV3_2G035050 Cucumis sativus L. HOM05D002044 ORTHO05D005337 9.2e-23 110.2 80 71.2
Migut.B00409 Erythranthe guttata HOM05D002044 ORTHO05D005337 9.2e-23 110.2 80 70.0
Glyma.20G131000 Glycine max HOM05D002044 ORTHO05D005337 9.2e-23 110.2 80 70.0
VMungo0720G1876 Vigna mungo HOM05D002044 ORTHO05D005337 9.2e-23 110.2 80 70.0
Haze_10209 Corylus avellana HOM05D002044 ORTHO05D005337 1.2e-22 109.8 80 71.2
Hma1.2p1_0375F.1_g138885 Hydrangea macrophylla HOM05D002044 ORTHO05D005337 1.2e-22 109.8 80 71.2
Lalb_Chr21g0308221 Lupinus albus HOM05D002044 ORTHO05D005337 1.2e-22 109.8 80 71.2
Sc08g0001210 Simmondsia chinensis HOM05D002044 ORTHO05D005337 1.2e-22 109.8 80 71.2
ClCG02G008580 Citrullus lanatus HOM05D002044 ORTHO05D005337 1.6e-22 109.4 79 73.4
PGR042G0312 Punica granatum HOM05D002044 ORTHO05D005337 1.6e-22 109.4 80 70.0
Thecc.02G112200 Theobroma cacao HOM05D002044 ORTHO05D005337 1.6e-22 109.4 80 68.8
Actinidia04375 Actinidia chinensis HOM05D002044 ORTHO05D005337 2.1e-22 109.0 80 70.0
Actinidia05503 Actinidia chinensis HOM05D002044 ORTHO05D005337 2.1e-22 109.0 80 70.0
ATR0753G080 Amborella trichopoda HOM05D002044 ORTHO05D005337 2.1e-22 109.0 79 70.9
Atru.chr12.1082 Acer truncatum HOM05D002044 ORTHO05D005337 2.7e-22 108.6 80 70.0
Ciclev10029279m.g Citrus clementina HOM05D002044 ORTHO05D005337 2.7e-22 108.6 80 71.2
Eucgr.G01295 Eucalyptus grandis HOM05D002044 ORTHO05D005337 2.7e-22 108.6 80 70.0
Gohir.D02G206500 Gossypium hirsutum HOM05D002044 ORTHO05D005337 2.7e-22 108.6 80 70.0
Gorai.005G233900 Gossypium raimondii HOM05D002044 ORTHO05D005337 2.7e-22 108.6 80 70.0
Oeu011152.1 Olea europaea HOM05D002044 ORTHO05D005337 2.7e-22 108.6 80 67.5
Sed0022817 Sechium edule HOM05D002044 ORTHO05D005337 2.7e-22 108.6 80 68.8
SGA_v2.0_scaffold225G42999 Striga asiatica HOM05D002044 ORTHO05D005337 2.7e-22 108.6 80 67.5
Cc02_g19500 Coffea canephora HOM05D002044 ORTHO05D005337 3.5e-22 108.2 80 71.2
unitig_0.g881 Utricularia gibba HOM05D002044 ORTHO05D005337 3.5e-22 108.2 80 68.8
HPP92_024630 Vanilla planifolia HOM05D002044 ORTHO05D005337 3.5e-22 108.2 80 73.8
CSS0000930 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 4.6e-22 107.8 80 67.5
Cfa004613 Carpinus fangiana HOM05D002044 ORTHO05D005337 4.6e-22 107.8 80 70.0
Solyc11g012730.3 Solanum lycopersicum HOM05D002044 ORTHO05D005337 6.0e-22 107.5 80 71.2
Sopen11g007470 Solanum pennellii HOM05D002044 ORTHO05D005337 6.0e-22 107.5 80 71.2
TWI79G1456 Tripterygium wilfordii HOM05D002044 ORTHO05D005337 6.0e-22 107.5 80 68.8
Duzib132G1163 Durio zibethinus HOM05D002044 ORTHO05D005337 7.8e-22 107.1 80 68.8
Gohir.A03G185000 Gossypium hirsutum HOM05D002044 ORTHO05D005337 7.8e-22 107.1 80 68.8
Nitab4.5_0003534g0050 Nicotiana tabacum HOM05D002044 ORTHO05D005337 7.8e-22 107.1 80 68.8
Sed0009404 Sechium edule HOM05D002044 ORTHO05D005337 7.8e-22 107.1 80 68.8
PGSC0003DMG400013301 Solanum tuberosum HOM05D002044 ORTHO05D005337 7.8e-22 107.1 80 71.2
ECA234G0629 Erigeron canadensis HOM05D002044 ORTHO05D005337 1.0e-21 106.7 80 68.8
Glyma.15G219600 Glycine max HOM05D002044 ORTHO05D005337 1.0e-21 106.7 80 67.5
Lsat_1_v5_gn_3_25161 Lactuca sativa HOM05D002044 ORTHO05D005337 1.0e-21 106.7 80 70.0
Lj5g0028080 Lotus japonicus HOM05D002044 ORTHO05D005337 1.0e-21 106.7 80 65.0
Nitab4.5_0002441g0030 Nicotiana tabacum HOM05D002044 ORTHO05D005337 1.0e-21 106.7 80 68.8
Aqoxy6G02802 Aquilegia oxysepala HOM05D002044 ORTHO05D005337 1.3e-21 106.3 80 67.5
CSS0022335 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 1.3e-21 106.3 80 66.2
CDE02G0142 Ceratophyllum demersum HOM05D002044 ORTHO05D005337 1.3e-21 106.3 79 69.6
CDE04G1739 Ceratophyllum demersum HOM05D002044 ORTHO05D005337 1.3e-21 106.3 80 67.5
DCAR_029099 Daucus carota HOM05D002044 ORTHO05D005337 1.3e-21 106.3 80 66.2
Hma1.2p1_1518F.1_g288530 Hydrangea macrophylla HOM05D002044 ORTHO05D005337 1.3e-21 106.3 80 68.8
Lalb_Chr06g0165321 Lupinus albus HOM05D002044 ORTHO05D005337 1.3e-21 106.3 80 68.8
Nitab4.5_0010237g0020 Nicotiana tabacum HOM05D002044 ORTHO05D005337 1.3e-21 106.3 79 69.6
TWI75G1328 Tripterygium wilfordii HOM05D002044 ORTHO05D005337 2.3e-21 105.5 80 66.2
Lsat_1_v5_gn_6_99560 Lactuca sativa HOM05D000288 ORTHO05D005337 3.0e-21 105.1 80 68.8
PSO017G0285 Papaver somniferum HOM05D002044 ORTHO05D005337 3.0e-21 105.1 80 67.5
PSO541G3790 Papaver somniferum HOM05D002044 ORTHO05D005337 3.0e-21 105.1 80 67.5
PSO675G8768 Papaver somniferum HOM05D002044 ORTHO05D005337 3.0e-21 105.1 80 67.5
Peaxi162Scf00925g00012 Petunia axillaris HOM05D002044 ORTHO05D005337 3.0e-21 105.1 76 71.1
vmacro19458 Vaccinium macrocarpon HOM05D002044 ORTHO05D005337 3.0e-21 105.1 80 66.2
Phvul.007G042300 Phaseolus vulgaris HOM05D002044 ORTHO05D005337 3.9e-21 104.8 80 65.0
Rhsim05G0089300 Rhododendron simsii HOM05D002044 ORTHO05D005337 5.1e-21 104.4 80 66.2
CSS0042304 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 8.6e-21 103.6 80 63.8
Cpa.g.sc292.6 Carica papaya HOM05D002044 ORTHO05D005337 1.1e-20 103.2 80 68.8
Rhsim10G0161800 Rhododendron simsii HOM05D002044 ORTHO05D005337 1.1e-20 103.2 80 65.0
EL10Ac9g22245 Beta vulgaris HOM05D002044 ORTHO05D005337 1.9e-20 102.4 75 70.7
Zm00001eb178370 Zea mays HOM05D002044 ORTHO05D005337 3.3e-20 101.7 80 66.2
SalBow6G3741 Salvia bowleyana HOM05D002044 ORTHO05D005337 5.6e-20 100.9 80 63.8
SalBow6G6092 Salvia bowleyana HOM05D002044 ORTHO05D005337 5.6e-20 100.9 80 63.8
CSS0041438 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 1.6e-19 99.4 80 65.0
Os08g0250700 Oryza sativa ssp. japonica HOM05D002044 ORTHO05D005337 2.8e-19 98.6 80 65.0
SEGI_30240 Sequoiadendron giganteum HOM05D002044 ORTHO05D005337 3.6e-19 98.2 82 65.9
CSS0033320 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 4.7e-19 97.8 80 63.8
CSS0012634 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 5.2e-18 94.4 80 62.5
Pp3c8_16300 Physcomitrium patens HOM05D002044 ORTHO05D005337 3.2e-15 85.1 80 55.0
CBR_g41441 Chara braunii HOM05D002044 ORTHO05D005337 9.2e-15 83.6 82 56.1
Mapoly0048s0065 Marchantia polymorpha HOM05D002044 ORTHO05D005337 9.2e-15 83.6 80 52.5
CSS0030744 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 7.8e-14 80.5 80 56.2
TAR381G0640 Trochodendron aralioides HOM05D002044 ORTHO05D005337 1.0e-13 80.1 80 56.2
CSS0022955 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 3.0e-13 78.6 75 54.7
ECA248G0245 Erigeron canadensis HOM05D000121 ORTHO05D000102 8.1e-11 70.5 59 61.0
PRCOL_00005050 Prasinoderma coloniale HOM05D002044 ORTHO05D005337 7.6e-09 63.9 76 47.4
Cre01.g037800 Chlamydomonas reinhardtii HOM05D002044 ORTHO05D005337 9.9e-09 63.5 88 37.5
MCO11G837 Micromonas commoda HOM05D002044 ORTHO05D005337 8.4e-08 60.5 86 38.4
CAN.G587.70 Capsicum annuum HOM05D002044 ORTHO05D005337 9.3e-07 57.0 36 75.0
Sc08g0001240 Simmondsia chinensis HOM05D002044 ORTHO05D005337 1.6e-06 56.2 37 73.0


User provided reference genes

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