Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p62330 Brassica napus HOM05D002412 ORTHO05D002516 1.8e-96 355.9 182 100.0
BolC7t46433H Brassica oleracea HOM05D002412 ORTHO05D002516 3.0e-91 338.6 183 96.2
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 1.1e-82 310.1 159 99.4
C07p59890 Brassica napus HOM05D002412 ORTHO05D002516 1.7e-78 296.2 159 96.2
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 4.4e-74 281.6 150 96.7
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 5.7e-74 281.2 152 94.1
BcaNung04670 Brassica carinata HOM05D002412 ORTHO05D002516 9.4e-69 263.8 183 80.9
BolC1t00474H Brassica oleracea HOM05D002412 ORTHO05D002516 1.0e-62 243.8 179 76.5
Sp7g31540 Schrenkiella parvula HOM05D002412 ORTHO05D002516 1.3e-62 243.4 165 78.8
A01p04520 Brassica napus HOM05D002412 ORTHO05D002516 1.7e-62 243.0 150 86.0
C01p04900 Brassica napus HOM05D002412 ORTHO05D002516 8.6e-62 240.7 150 85.3
Thhalv10026460m.g Eutrema salsugineum HOM05D002412 ORTHO05D002516 1.9e-61 239.6 157 79.6
BraA01t00437Z Brassica rapa HOM05D002412 ORTHO05D002516 9.5e-61 237.3 150 84.0
AT4G33800 Arabidopsis thaliana HOM05D002412 ORTHO05D002516 5.9e-55 218.0 156 79.5
BcaC09g52190 Brassica carinata HOM05D002412 ORTHO05D002516 1.9e-53 213.0 135 84.4
CARHR241890 Cardamine hirsuta HOM05D002412 ORTHO05D002516 1.4e-51 206.8 158 74.7
AL7G17660 Arabidopsis lyrata HOM05D002412 ORTHO05D002516 8.9e-51 204.1 176 69.3
Carub.0007s0663 Capsella rubella HOM05D002412 ORTHO05D002516 5.4e-48 194.9 178 66.9
BcaC01g00964 Brassica carinata HOM05D002412 ORTHO05D002516 5.0e-46 188.3 155 69.0
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 9.2e-32 141.0 168 54.8
Aa31LG2G17080 Aethionema arabicum HOM05D002412 ORTHO05D002516 4.4e-26 122.1 167 52.7
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 1.4e-19 100.5 158 43.7
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 1.1e-16 90.9 167 41.9
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 2.4e-16 89.7 168 41.7
C03p86390 Brassica napus HOM05D057568 ORTHO05D041454 7.1e-16 88.2 152 41.4
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 9.3e-16 87.8 160 40.6
BolC3t20931H Brassica oleracea HOM05D057568 ORTHO05D041454 1.2e-15 87.4 130 46.9
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 1.6e-15 87.0 151 43.7
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 2.7e-15 86.3 161 41.0
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 3.5e-15 85.9 178 38.8
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 3.5e-15 85.9 165 40.0
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 6.0e-15 85.1 158 43.0
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 7.9e-15 84.7 171 40.4
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 1.3e-14 84.0 161 40.4
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 2.3e-14 83.2 158 39.9
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 3.0e-14 82.8 161 42.9
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 3.0e-14 82.8 169 43.8
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 8.7e-14 81.3 162 38.9
Ah.01g007050 Amaranthus hybridus HOM05D002412 ORTHO05D002516 1.1e-13 80.9 167 40.1
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.5e-13 80.5 169 37.9
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 1.5e-13 80.5 169 37.9
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.9e-13 80.1 159 39.0
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.9e-13 80.1 165 38.2
TPR.G21149 Trifolium pratense HOM05D002412 ORTHO05D002516 3.3e-13 79.3 157 38.9
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 9.6e-13 77.8 163 40.5
Medtr1g106080 Medicago truncatula HOM05D002412 ORTHO05D002516 9.6e-13 77.8 160 41.2
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.6e-12 77.0 169 37.3
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.6e-12 77.0 161 38.5
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 2.1e-12 76.6 156 39.1
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 2.1e-12 76.6 163 38.7
SalBow6G4199 Salvia bowleyana HOM05D002412 ORTHO05D002516 2.8e-12 76.3 170 37.1
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 2.8e-12 76.3 160 39.4
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 2.8e-12 76.3 159 42.8
Actinidia00360 Actinidia chinensis HOM05D002412 ORTHO05D002516 3.6e-12 75.9 164 39.0
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 3.6e-12 75.9 154 38.3
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 6.2e-12 75.1 154 41.6
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 6.2e-12 75.1 155 43.2
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 8.1e-12 74.7 174 36.8
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 8.1e-12 74.7 161 37.9
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 8.1e-12 74.7 151 39.1
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 1.1e-11 74.3 160 39.4
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 1.1e-11 74.3 169 39.1
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.1e-11 74.3 159 38.4
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.1e-11 74.3 161 39.8
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 1.4e-11 73.9 173 37.6
ECA246G2811 Erigeron canadensis HOM05D002412 ORTHO05D002516 1.4e-11 73.9 128 37.5
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 1.4e-11 73.9 154 39.6
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 1.4e-11 73.9 163 38.0
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 1.8e-11 73.6 169 36.1
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 1.8e-11 73.6 186 37.6
QL11p029982 Quercus lobata HOM05D002412 ORTHO05D002516 2.4e-11 73.2 172 37.8
RhsimUnG0041400 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.4e-11 73.2 161 39.8
RhsimUnG0123400 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.4e-11 73.2 161 39.8
Solyc01g106910.4 Solanum lycopersicum HOM05D002412 ORTHO05D002516 2.4e-11 73.2 165 34.5
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 1.5e-10 70.5 192 36.5
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 2.0e-10 70.1 158 39.9
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 2.0e-10 70.1 174 36.2
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 2.6e-10 69.7 161 39.1
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 2.6e-10 69.7 174 36.2
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 4.5e-10 68.9 131 44.3
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 4.5e-10 68.9 164 37.8
TWI59G0380 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 4.5e-10 68.9 174 37.9
DCAR_029176 Daucus carota HOM05D002412 ORTHO05D002516 5.8e-10 68.6 163 34.4
Glyma.20G135500 Glycine max HOM05D002412 ORTHO05D002516 5.8e-10 68.6 169 37.9
Potri.009G086600 Populus trichocarpa HOM05D002412 ORTHO05D002516 5.8e-10 68.6 182 37.4
Ca_11030_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 7.6e-10 68.2 170 37.6
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 7.6e-10 68.2 162 37.0
VMungo0720G0862 Vigna mungo HOM05D002412 ORTHO05D002516 7.6e-10 68.2 164 39.0
Psat6g214680 Pisum sativum HOM05D002412 ORTHO05D002516 9.9e-10 67.8 158 37.3
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.3e-09 67.4 160 35.0
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.3e-09 67.4 159 38.4
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 1.3e-09 67.4 166 36.1
Sabra09G0066300 Salix brachista HOM05D002412 ORTHO05D002516 1.3e-09 67.4 175 36.6
Lalb_Chr02g0144931 Lupinus albus HOM05D002412 ORTHO05D002516 1.7e-09 67.0 163 37.4
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 2.2e-09 66.6 159 37.1
Rhsim05G0091500 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.9e-09 66.2 129 41.1
Ca_24361_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 3.8e-09 65.9 133 42.9
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 3.8e-09 65.9 200 34.5
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 6.4e-09 65.1 150 35.3
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 8.4e-09 64.7 166 34.9
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 8.4e-09 64.7 157 37.6
PSO170G3219 Papaver somniferum HOM05D002412 ORTHO05D002516 8.4e-09 64.7 166 35.5
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 8.4e-09 64.7 191 35.1
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 8.4e-09 64.7 158 36.7
Glyma.10G256100 Glycine max HOM05D002412 ORTHO05D002516 1.1e-08 64.3 189 33.3
Nitab4.5_0001458g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.1e-08 64.3 165 37.6
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 1.4e-08 63.9 160 35.6
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 1.4e-08 63.9 165 38.8
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.4e-08 63.9 155 38.1
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 1.4e-08 63.9 157 39.5
Actinidia34355 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.9e-08 63.5 159 36.5
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 2.4e-08 63.2 133 39.8
Lj5g0012685 Lotus japonicus HOM05D002412 ORTHO05D002516 2.4e-08 63.2 167 34.7
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 3.2e-08 62.8 134 38.1
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 3.2e-08 62.8 174 39.1
EL10Ac9g22186 Beta vulgaris HOM05D002412 ORTHO05D002516 4.2e-08 62.4 158 36.1
MSTRG.20224 Avicennia marina HOM05D002412 ORTHO05D002516 5.5e-08 62.0 176 34.7
AUR62022466 Chenopodium quinoa HOM05D002412 ORTHO05D002516 7.1e-08 61.6 155 34.2
ECA236G2487 Erigeron canadensis HOM05D002412 ORTHO05D002516 7.1e-08 61.6 166 34.9
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 7.1e-08 61.6 170 34.7
DCAR_020053 Daucus carota HOM05D002412 ORTHO05D002516 9.3e-08 61.2 155 34.8
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 9.3e-08 61.2 156 37.8
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 1.2e-07 60.8 138 39.9
Psat0ss7070g0040 Pisum sativum HOM05D002412 ORTHO05D002516 1.2e-07 60.8 160 38.1
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 1.2e-07 60.8 163 36.2
Cc10_g05040 Coffea canephora HOM05D002412 ORTHO05D002516 1.6e-07 60.5 138 37.0
AUR62041661 Chenopodium quinoa HOM05D002412 ORTHO05D002516 2.7e-07 59.7 154 35.7
MELO3C010796.2 Cucumis melo HOM05D002412 ORTHO05D002516 2.7e-07 59.7 152 37.5
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 2.7e-07 59.7 165 36.4
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 2.7e-07 59.7 157 34.4
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 2.7e-07 59.7 158 39.2
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 3.5e-07 59.3 161 37.3
ATR0739G138 Amborella trichopoda HOM05D002412 ORTHO05D002516 4.6e-07 58.9 119 42.0
CsaV3_2G026020 Cucumis sativus L. HOM05D002412 ORTHO05D002516 4.6e-07 58.9 151 37.1
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 4.6e-07 58.9 157 32.5
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 4.6e-07 58.9 175 34.3
vmacro01953 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 4.6e-07 58.9 157 38.9
Eucgr.I01046 Eucalyptus grandis HOM05D002412 ORTHO05D002516 6.0e-07 58.5 172 35.5
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 6.0e-07 58.5 164 36.6
Potri.001G292100 Populus trichocarpa HOM05D002412 ORTHO05D002516 6.0e-07 58.5 184 33.2
Sp2g05130 Schrenkiella parvula HOM05D014607 ORTHO05D016575 6.0e-07 58.5 157 35.0
Atru.chr13.848 Acer truncatum HOM05D002412 ORTHO05D002516 7.9e-07 58.2 134 37.3
Sabra16G0182100 Salix brachista HOM05D002412 ORTHO05D002516 1.0e-06 57.8 169 34.3
Hund05293 Selenicereus undatus HOM05D002412 ORTHO05D002516 1.0e-06 57.8 79 45.6
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 1.3e-06 57.4 153 37.3
Nitab4.5_0007781g0010 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.3e-06 57.4 164 34.1
Sc15g0005620 Simmondsia chinensis HOM05D002412 ORTHO05D002516 1.3e-06 57.4 138 36.2
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 1.8e-06 57.0 143 35.0
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 2.3e-06 56.6 168 33.3
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 3.0e-06 56.2 155 37.4
Oeu037507.3 Olea europaea HOM05D006761 ORTHO05D002516 3.0e-06 56.2 152 36.8
Peaxi162Scf00003g00288 Petunia axillaris HOM05D002412 ORTHO05D002516 3.0e-06 56.2 135 35.6
unitig_0.g1046 Utricularia gibba HOM05D002412 ORTHO05D002516 3.0e-06 56.2 134 38.1
Rhsim05G0092300 Rhododendron simsii HOM05D002412 ORTHO05D002516 3.9e-06 55.8 132 39.4
Sed0010289 Sechium edule HOM05D002412 ORTHO05D002516 3.9e-06 55.8 153 37.9
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 5.1e-06 55.5 150 37.3
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 5.1e-06 55.5 123 35.0
Cpa.g.sc142.41 Carica papaya HOM05D002412 ORTHO05D002516 6.7e-06 55.1 140 36.4
Cc00_g17020 Coffea canephora HOM05D002412 ORTHO05D002516 6.7e-06 55.1 122 38.5
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 6.7e-06 55.1 189 30.7
Lalb_Chr06g0165021 Lupinus albus HOM05D002412 ORTHO05D002516 6.7e-06 55.1 128 38.3
CSS0009619 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 8.7e-06 54.7 159 36.5
CiPaw.06G164900 Carya illinoinensis HOM05D002412 ORTHO05D002516 8.7e-06 54.7 188 31.4
Medtr5g005230 Medicago truncatula HOM05D002412 ORTHO05D002516 8.7e-06 54.7 165 34.5


User provided reference genes

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