Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 8.4e-51 203.4 101 100.0
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 4.8e-30 134.4 209 44.0
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 1.0e-27 126.7 66 98.5
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.0e-27 126.7 66 98.5
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.0e-27 126.7 66 98.5
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.1e-21 106.7 64 89.1
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 1.1e-21 106.7 64 89.1
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 1.1e-21 106.7 64 89.1
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.4e-21 105.5 63 84.1
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 4.1e-21 104.8 60 91.7
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 4.1e-21 104.8 60 91.7
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 5.5e-18 94.4 63 77.8
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 9.4e-18 93.6 65 78.5
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 9.4e-18 93.6 67 73.1
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.0e-16 90.1 66 69.7
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 3.9e-16 88.2 66 68.2
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 6.7e-16 87.4 66 68.2
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.1e-15 86.7 68 70.6
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 8.5e-11 70.5 57 63.2
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 8.5e-11 70.5 72 51.4
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.5e-10 69.7 68 52.9
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.9e-10 69.3 61 50.8
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.9e-10 69.3 57 59.6
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.9e-10 69.3 62 56.5
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.9e-10 69.3 61 55.7
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 2.5e-10 68.9 67 55.2
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 2.5e-10 68.9 66 51.5
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 3.2e-10 68.6 47 66.0
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 4.2e-10 68.2 55 58.2
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 5.5e-10 67.8 44 68.2
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 7.2e-10 67.4 44 70.5
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 9.4e-10 67.0 64 57.8
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 9.4e-10 67.0 55 58.2
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.2e-09 66.6 61 49.2
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.2e-09 66.6 68 52.9
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.2e-09 66.6 68 52.9
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.6e-09 66.2 63 54.0
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.6e-09 66.2 68 52.9
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.6e-09 66.2 84 47.6
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 1.6e-09 66.2 41 75.6
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 2.1e-09 65.9 33 100.0
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 2.1e-09 65.9 65 56.9
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.1e-09 65.9 57 61.4
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 2.7e-09 65.5 61 55.7
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.7e-09 65.5 53 66.0
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 2.7e-09 65.5 46 67.4
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.7e-09 65.5 66 51.5
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.6e-09 65.1 68 51.5
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 3.6e-09 65.1 45 66.7
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.6e-09 65.1 65 47.7
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 3.6e-09 65.1 66 54.5
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 4.7e-09 64.7 64 54.7
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 4.7e-09 64.7 56 58.9
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 4.7e-09 64.7 63 47.6
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 6.1e-09 64.3 39 76.9
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 6.1e-09 64.3 39 76.9
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 8.0e-09 63.9 66 51.5
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 1.0e-08 63.5 44 63.6
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 1.0e-08 63.5 41 68.3
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.4e-08 63.2 65 50.8
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.4e-08 63.2 62 50.0
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.8e-08 62.8 65 53.8
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.8e-08 62.8 66 53.0
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 2.3e-08 62.4 67 47.8
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.0e-08 62.0 66 51.5
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.0e-08 62.0 62 50.0
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 3.0e-08 62.0 46 63.0
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 4.0e-08 61.6 66 48.5
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.0e-08 61.6 62 54.8
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 4.0e-08 61.6 61 52.5
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.2e-08 61.2 39 71.8
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 6.7e-08 60.8 59 47.5
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 6.7e-08 60.8 41 63.4
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 6.7e-08 60.8 66 48.5
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.7e-08 60.8 63 50.8
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.7e-08 60.8 66 54.5
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 8.8e-08 60.5 45 60.0
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 8.8e-08 60.5 45 57.8
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 8.8e-08 60.5 47 57.4
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 8.8e-08 60.5 46 60.9
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.1e-07 60.1 66 50.0
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.5e-07 59.7 66 45.5
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.5e-07 59.7 46 58.7
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.5e-07 59.7 63 52.4
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.5e-07 59.7 70 47.1
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 2.0e-07 59.3 67 50.7
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.0e-07 59.3 57 45.6
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.6e-07 58.9 63 54.0
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 2.6e-07 58.9 53 52.8
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 2.6e-07 58.9 53 52.8
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 4.4e-07 58.2 46 58.7
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.7e-07 57.8 58 56.9
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 5.7e-07 57.8 66 43.9
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 5.7e-07 57.8 56 57.1
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 5.7e-07 57.8 66 45.5
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 5.7e-07 57.8 41 65.9
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 5.7e-07 57.8 46 56.5
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 5.7e-07 57.8 45 60.0
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.5e-07 57.4 39 66.7
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 7.5e-07 57.4 64 50.0
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 7.5e-07 57.4 63 55.6
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 9.7e-07 57.0 44 56.8
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 9.7e-07 57.0 69 44.9
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 1.3e-06 56.6 55 52.7
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.3e-06 56.6 71 45.1
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.7e-06 56.2 69 43.5
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 2.2e-06 55.8 38 63.2
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.8e-06 55.5 58 43.1
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.8e-06 55.5 58 43.1
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 3.7e-06 55.1 58 50.0
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 4.8e-06 54.7 69 47.8
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 4.8e-06 54.7 67 43.3
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 4.8e-06 54.7 71 45.1
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 6.3e-06 54.3 36 69.4
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 6.3e-06 54.3 42 57.1
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 6.3e-06 54.3 81 40.7
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 6.3e-06 54.3 65 43.1
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 8.2e-06 53.9 76 42.1


User provided reference genes

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