Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p60520 Brassica napus HOM05D005782 ORTHO05D007436 1.0e-171 606.7 309 100.0
BraA03t15091Z Brassica rapa HOM05D005782 ORTHO05D007436 2.2e-171 605.5 309 99.7
C01p07890 Brassica napus HOM05D005782 ORTHO05D007436 5.2e-136 488.0 287 88.9
BolC1t00776H Brassica oleracea HOM05D005782 ORTHO05D007436 5.2e-136 488.0 287 88.9
BcaC09g51891 Brassica carinata HOM05D005782 ORTHO05D007436 2.0e-135 486.1 287 88.5
BraA01t00665Z Brassica rapa HOM05D005782 ORTHO05D007436 2.6e-135 485.7 282 90.1
A01p07130 Brassica napus HOM05D005782 ORTHO05D007436 7.6e-135 484.2 282 89.4
Sp7g28920 Schrenkiella parvula HOM05D005782 ORTHO05D007436 1.9e-133 479.6 282 88.3
BcaNung03419 Brassica carinata HOM05D005782 ORTHO05D007436 3.2e-133 478.8 284 89.8
Thhalv10025215m.g Eutrema salsugineum HOM05D005782 ORTHO05D007436 3.0e-131 472.2 285 86.0
AT4G31040 Arabidopsis thaliana HOM05D005782 ORTHO05D007436 9.6e-130 467.2 287 83.3
AL7G21030 Arabidopsis lyrata HOM05D005782 ORTHO05D007436 2.1e-129 466.1 284 84.9
Carub.0007s0948 Capsella rubella HOM05D005782 ORTHO05D007436 4.7e-129 464.9 284 84.9
CARHR238950 Cardamine hirsuta HOM05D005782 ORTHO05D007436 8.1e-129 464.2 285 85.3
Aa31LG2G19280 Aethionema arabicum HOM05D005782 ORTHO05D007436 7.3e-122 441.0 291 78.7
THA.LOC104803572 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 5.4e-117 424.9 287 77.4
BcaNung02727 Brassica carinata HOM05D005782 ORTHO05D007436 1.7e-110 403.3 298 76.5
Atru.chr7.1036 Acer truncatum HOM05D005782 ORTHO05D007436 2.1e-105 386.3 291 70.1
GSVIVG01032240001 Vitis vinifera HOM05D005782 ORTHO05D007436 1.3e-102 377.1 292 69.2
Sed0017765 Sechium edule HOM05D005782 ORTHO05D007436 2.9e-102 375.9 286 69.2
Manes.05G205900 Manihot esculenta HOM05D005782 ORTHO05D007436 4.2e-101 372.1 280 70.7
MSTRG.19410 Avicennia marina HOM05D005782 ORTHO05D007436 5.5e-101 371.7 292 68.8
CSS0047952 Camellia sinensis var. sinensis HOM05D005782 ORTHO05D007436 5.5e-101 371.7 290 68.6
PGR142G1608 Punica granatum HOM05D005782 ORTHO05D007436 7.1e-101 371.3 288 68.4
MD04G1001800 Malus domestica HOM05D005782 ORTHO05D007436 9.3e-101 370.9 278 69.4
Nn8g41244 Nelumbo nucifera HOM05D005782 ORTHO05D007436 2.1e-100 369.8 289 67.5
CsaV3_2G009240 Cucumis sativus L. HOM05D005782 ORTHO05D007436 3.5e-100 369.0 293 66.6
Potri.006G080100 Populus trichocarpa HOM05D005782 ORTHO05D007436 4.6e-100 368.6 299 66.6
TWI32G0667 Tripterygium wilfordii HOM05D005782 ORTHO05D007436 4.6e-100 368.6 289 68.5
MD10G1290500 Malus domestica HOM05D005782 ORTHO05D007436 1.0e-99 367.5 284 68.3
Sabra06G0060600 Salix brachista HOM05D005782 ORTHO05D007436 1.8e-99 366.7 298 66.1
Nitab4.5_0000170g0200 Nicotiana tabacum HOM05D005782 ORTHO05D007436 3.0e-99 365.9 290 66.2
Migut.J00857 Erythranthe guttata HOM05D005782 ORTHO05D007436 6.7e-99 364.8 280 71.4
Potri.018G150000 Populus trichocarpa HOM05D005782 ORTHO05D007436 6.7e-99 364.8 299 66.6
SGA_v2.0_scaffold318G48485 Striga asiatica HOM05D005782 ORTHO05D007436 1.1e-98 364.0 282 68.4
Thecc.09G201300 Theobroma cacao HOM05D005782 ORTHO05D007436 1.1e-98 364.0 283 70.3
Eucgr.C02158 Eucalyptus grandis HOM05D005782 ORTHO05D007436 1.5e-98 363.6 281 69.0
Oeu021242.1 Olea europaea HOM05D005782 ORTHO05D007436 1.3e-97 360.5 291 65.3
Haze_21249 Corylus avellana HOM05D005782 ORTHO05D007436 6.2e-97 358.2 346 59.2
CAN.G63.1 Capsicum annuum HOM05D005782 ORTHO05D007436 8.2e-97 357.8 283 68.6
TPR.G21340 Trifolium pratense HOM05D005782 ORTHO05D007436 8.2e-97 357.8 289 64.7
RcHm_v2.0_Chr4g0384781 Rosa chinensis HOM05D005782 ORTHO05D007436 1.4e-96 357.1 282 66.0
Actinidia07556 Actinidia chinensis HOM05D005782 ORTHO05D007436 2.4e-96 356.3 289 65.4
arahy.Tifrunner.gnm1.ann1.05JXYY Arachis hypogaea HOM05D005782 ORTHO05D007436 2.4e-96 356.3 299 62.5
Glyma.08G359700 Glycine max HOM05D005782 ORTHO05D007436 4.1e-96 355.5 285 66.3
AUR62015437 Chenopodium quinoa HOM05D005782 ORTHO05D007436 9.0e-96 354.4 283 64.7
arahy.Tifrunner.gnm1.ann1.PZIB41 Arachis hypogaea HOM05D005782 ORTHO05D007436 1.2e-95 354.0 299 62.5
Lj2g0003070 Lotus japonicus HOM05D005782 ORTHO05D007436 1.2e-95 354.0 281 66.9
Lalb_Chr24g0401711 Lupinus albus HOM05D005782 ORTHO05D007436 1.2e-95 354.0 285 63.9
MSTRG.5969 Avicennia marina HOM05D005782 ORTHO05D007436 2.0e-95 353.2 294 65.6
FvH4_4g00180 Fragaria vesca HOM05D005782 ORTHO05D007436 4.5e-95 352.1 277 67.5
Prupe.1G002100 Prunus persica HOM05D005782 ORTHO05D007436 5.8e-95 351.7 276 67.4
VMungo0464G0621 Vigna mungo HOM05D005782 ORTHO05D007436 1.3e-94 350.5 282 67.0
MBI16_g00821_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 1.7e-94 350.1 295 63.4
EL10Ac3g05861 Beta vulgaris HOM05D005782 ORTHO05D007436 2.9e-94 349.4 284 64.4
HanXRQChr03g0067061 Helianthus annuus HOM05D005782 ORTHO05D007436 2.9e-94 349.4 295 64.1
Aqoxy7G02605 Aquilegia oxysepala HOM05D005782 ORTHO05D007436 3.8e-94 349.0 290 63.1
Sc09g0007530 Simmondsia chinensis HOM05D005782 ORTHO05D007436 3.8e-94 349.0 280 66.1
Gorai.009G000300 Gossypium raimondii HOM05D005782 ORTHO05D007436 5.0e-94 348.6 286 65.7
Ah.13g066690 Amaranthus hybridus HOM05D005782 ORTHO05D007436 6.5e-94 348.2 282 66.7
Gohir.D05G000500 Gossypium hirsutum HOM05D005782 ORTHO05D007436 6.5e-94 348.2 286 65.7
TAR383G0506 Trochodendron aralioides HOM05D005782 ORTHO05D007436 6.5e-94 348.2 290 66.2
Cc06_g23670 Coffea canephora HOM05D005782 ORTHO05D007436 8.4e-94 347.8 294 62.9
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 5.5e-93 345.1 242 74.0
Gohir.A05G000300 Gossypium hirsutum HOM05D005782 ORTHO05D007436 5.5e-93 345.1 284 65.5
CANSAT80G1379 Cannabis sativa HOM05D005782 ORTHO05D007436 9.3e-93 344.4 290 66.2
FAN12G2371 Fragaria x ananassa HOM05D005782 ORTHO05D007436 3.3e-90 335.9 308 60.7
ATR0626G413 Amborella trichopoda HOM05D005782 ORTHO05D007436 4.3e-90 335.5 285 62.5
MBI13_g33574_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 5.7e-90 335.1 282 62.8
BolC7t46295H Brassica oleracea HOM05D005782 ORTHO05D007436 3.7e-89 332.4 233 78.1
PSO063G1085 Papaver somniferum HOM05D005782 ORTHO05D007436 4.8e-89 332.0 288 65.3
PSO170G1242 Papaver somniferum HOM05D005782 ORTHO05D007436 4.8e-89 332.0 288 64.9
Sopen07g022440 Solanum pennellii HOM05D005782 ORTHO05D007436 1.1e-88 330.9 287 63.4
Os08g0224300 Oryza sativa ssp. japonica HOM05D005782 ORTHO05D007436 1.8e-88 330.1 283 63.6
CiPaw.08G000500 Carya illinoinensis HOM05D005782 ORTHO05D007436 9.0e-88 327.8 207 80.7
CDE02G4601 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 2.0e-87 326.6 280 60.4
DCAR_014583 Daucus carota HOM05D005782 ORTHO05D010280 2.0e-87 326.6 277 63.5
CDE04G3649 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 4.5e-87 325.5 288 59.7
C07p58400 Brassica napus HOM05D005782 ORTHO05D007436 3.8e-86 322.4 233 76.8
ECA240G2713 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.4e-85 320.5 288 61.8
Zm00001eb404240 Zea mays HOM05D005782 ORTHO05D007436 1.4e-85 320.5 285 58.2
Duzib150G0032 Durio zibethinus HOM05D005782 ORTHO05D007436 2.5e-85 319.7 268 66.0
Nitab4.5_0000807g0130 Nicotiana tabacum HOM05D005782 ORTHO05D007436 2.1e-84 316.6 290 60.0
Rhsim01G0103700 Rhododendron simsii HOM05D005782 ORTHO05D007436 4.6e-84 315.5 292 59.2
Psat1g051920 Pisum sativum HOM05D005782 ORTHO05D007436 6.1e-84 315.1 278 61.5
Zm00001eb000750 Zea mays HOM05D005782 ORTHO05D007436 6.1e-84 315.1 292 56.8
RhsimUnG0238700 Rhododendron simsii HOM05D005782 ORTHO05D007436 5.7e-82 308.5 301 57.5
Zm00001eb000720 Zea mays HOM05D005782 ORTHO05D007436 4.8e-81 305.4 292 55.8
MELO3C003909.2 Cucumis melo HOM05D005782 ORTHO05D007436 9.1e-80 301.2 252 63.9
Cfa012886 Carpinus fangiana HOM05D005782 ORTHO05D007436 2.6e-79 299.7 246 65.4
AUR62002224 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.4e-77 293.9 265 61.5
Ca_25640_v3 Cicer arietinum L. HOM05D005782 ORTHO05D007436 2.0e-74 283.5 172 79.1
QL11p006989 Quercus lobata HOM05D005782 ORTHO05D007436 3.1e-72 276.2 290 56.2
Lsat_1_v5_gn_7_57180 Lactuca sativa HOM05D005782 ORTHO05D007436 7.7e-71 271.6 283 55.8
FAN22G1527 Fragaria x ananassa HOM05D005782 ORTHO05D007436 1.3e-70 270.8 234 61.5
Medtr6g093210 Medicago truncatula HOM05D005782 ORTHO05D007436 1.8e-67 260.4 249 57.8
Pp3c4_7870 Physcomitrium patens HOM05D005782 ORTHO05D007436 6.3e-65 251.9 293 47.8
THA.LOC104804495 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 6.3e-65 251.9 141 87.2
Glyma.01G001100 Glycine max HOM05D005782 ORTHO05D007436 4.1e-64 249.2 221 60.6
Mapoly0066s0016 Marchantia polymorpha HOM05D005782 ORTHO05D007436 1.2e-63 247.7 301 46.2
vmacro20737 Vaccinium macrocarpon HOM05D005782 ORTHO05D007436 1.2e-63 247.7 322 48.8
Hund04583 Selenicereus undatus HOM05D005782 ORTHO05D007436 3.5e-63 246.1 287 51.2
ClCG11G011190 Citrullus lanatus HOM05D005782 ORTHO05D007436 4.5e-63 245.7 285 51.2
SEGI_19916 Sequoiadendron giganteum HOM05D005782 ORTHO05D007436 5.0e-62 242.3 255 49.4
Ciclev10033693m.g Citrus clementina HOM05D005782 ORTHO05D007436 9.4e-61 238.0 140 83.6
HPP92_020428 Vanilla planifolia HOM05D005782 ORTHO05D007436 6.1e-60 235.3 150 74.7
Pp3c10_12270 Physcomitrium patens HOM05D005782 ORTHO05D007436 8.0e-60 235.0 303 43.9
Lj5A796G22 Lonicera japonica HOM05D005782 ORTHO05D007436 1.8e-56 223.8 214 59.8
AagrBONN_evm.TU.Sc2ySwM_117.1743 Anthoceros agrestis HOM05D005782 ORTHO05D007436 1.6e-55 220.7 284 44.4
Cpa.g.sc91.69 Carica papaya HOM05D005782 ORTHO05D007436 2.9e-54 216.5 233 54.9
Phvul.L001608 Phaseolus vulgaris HOM05D005782 ORTHO05D007436 3.2e-53 213.0 199 58.3
CBR_g84827 Chara braunii HOM05D005782 ORTHO05D007436 1.6e-52 210.7 251 47.8
FAN17G0526 Fragaria x ananassa HOM05D005782 ORTHO05D007436 3.6e-52 209.5 202 57.4
unitig_578.g15870 Utricularia gibba HOM05D000412 ORTHO05D000429 1.0e-51 208.0 216 56.0
Gohir.A05G000250 Gossypium hirsutum HOM05D005782 ORTHO05D007436 3.5e-47 193.0 202 55.4
A08p18910 Brassica napus HOM05D005782 ORTHO05D007436 4.5e-47 192.6 270 49.6
HPP92_020430 Vanilla planifolia HOM05D005782 ORTHO05D007436 4.0e-35 152.9 105 68.6
Peaxi162Scf00474g00214 Petunia axillaris HOM05D005782 ORTHO05D007436 4.1e-32 142.9 151 55.6
Ciclev10033590m.g Citrus clementina HOM05D005782 ORTHO05D007436 2.0e-31 140.6 146 56.8
Peaxi162Scf00474g00221 Petunia axillaris HOM05D005782 ORTHO05D007436 3.0e-30 136.7 102 66.7
Solyc07g042800.2 Solanum lycopersicum HOM05D005782 ORTHO05D007436 6.2e-28 129.0 143 51.7
BcaC01g01117 Brassica carinata HOM05D005782 ORTHO05D027183 4.0e-27 126.3 193 46.1
Solyc07g042820.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 6.8e-27 125.6 88 70.5
Actinidia02524 Actinidia chinensis HOM05D005782 ORTHO05D007436 1.2e-15 88.2 123 44.7
QL11p007002 Quercus lobata HOM05D005782 ORTHO05D007436 1.7e-14 84.3 44 88.6
Actinidia02544 Actinidia chinensis HOM05D005782 ORTHO05D007436 1.9e-13 80.9 56 69.6
MBI15_g25469_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000030 1.4e-11 74.7 50 64.0
Cre06.g260250 Chlamydomonas reinhardtii HOM05D005782 ORTHO05D007436 3.1e-11 73.6 250 28.4
Solyc07g042810.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 2.0e-10 70.9 48 77.1
Cfa012883 Carpinus fangiana HOM05D005782 ORTHO05D000300 8.4e-09 65.5 101 43.6
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 9.3e-08 62.0 134 30.6
PRCOL_00003075 Prasinoderma coloniale HOM05D005782 ORTHO05D007436 7.8e-07 58.9 169 27.2
AUR62044085 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.0e-06 58.5 134 29.9


User provided reference genes

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