Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p60150 Brassica napus HOM05D003759 ORTHO05D004149 1.1e-107 393.3 201 100.0
BraA03t15060Z Brassica rapa HOM05D003759 ORTHO05D004149 1.1e-107 393.3 201 100.0
C07p58060 Brassica napus HOM05D000058 ORTHO05D000077 8.2e-98 360.5 205 92.7
BolC7t46265H Brassica oleracea HOM05D003759 ORTHO05D004149 8.2e-98 360.5 205 92.7
BcaNung00572 Brassica carinata HOM05D003759 ORTHO05D004149 3.1e-97 358.6 205 92.2
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 2.7e-85 318.9 221 80.1
Sp7g28510 Schrenkiella parvula HOM05D003759 ORTHO05D004149 4.0e-68 261.9 238 66.4
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 5.5e-62 241.5 214 70.1
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 7.2e-62 241.1 218 69.7
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 2.1e-61 239.6 218 69.3
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 8.0e-61 237.7 214 69.2
BolC1t00818H Brassica oleracea HOM05D003759 ORTHO05D004149 8.0e-61 237.7 217 69.1
BcaNung02973 Brassica carinata HOM05D003759 ORTHO05D004149 1.8e-57 226.5 232 62.9
Thhalv10026294m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 9.2e-49 197.6 201 63.7
AL7G21510 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 3.0e-47 192.6 229 56.3
CARHR238510 Cardamine hirsuta HOM05D003759 ORTHO05D004149 3.3e-46 189.1 240 55.8
AT4G30630 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 8.0e-45 184.5 230 54.8
Carub.0007s0993 Capsella rubella HOM05D003759 ORTHO05D004149 2.3e-39 166.4 208 52.4
THA.LOC104803918 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 1.8e-36 156.8 235 46.4
THA.LOC104819991 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 1.1e-33 147.5 237 47.7
Aa31LG2G19870 Aethionema arabicum HOM05D003759 ORTHO05D004149 4.2e-25 119.0 205 42.4
Thhalv10014665m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 4.7e-21 105.5 210 37.1
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 1.8e-20 103.6 199 38.2
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 4.0e-20 102.4 199 37.7
C09p49780 Brassica napus HOM05D003759 ORTHO05D004149 6.9e-20 101.7 209 36.8
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 9.0e-20 101.3 245 35.9
Psat4g009880 Pisum sativum HOM05D003759 ORTHO05D004149 9.0e-20 101.3 249 35.3
BolC9t57829H Brassica oleracea HOM05D003759 ORTHO05D004149 2.6e-19 99.8 210 36.2
Lj4g0026574 Lotus japonicus HOM05D003759 ORTHO05D004149 2.6e-19 99.8 249 34.1
Medtr4g130700 Medicago truncatula HOM05D003759 ORTHO05D004149 5.8e-19 98.6 245 33.5
A03p12490 Brassica napus HOM05D003759 ORTHO05D004149 9.9e-19 97.8 208 35.6
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 1.3e-18 97.4 244 35.2
Carub.0008s1844 Capsella rubella HOM05D003759 ORTHO05D004149 2.2e-18 96.7 221 35.3
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 3.8e-18 95.9 246 36.2
PGR102G0437 Punica granatum HOM05D003759 ORTHO05D004149 8.4e-18 94.7 263 32.7
BcaB05g22385 Brassica carinata HOM05D003759 ORTHO05D004149 1.4e-17 94.0 210 37.6
BcaB05g22386 Brassica carinata HOM05D003759 ORTHO05D004149 1.4e-17 94.0 203 36.9
A02p08110 Brassica napus HOM05D003759 ORTHO05D004149 1.4e-17 94.0 201 36.8
C02p13760 Brassica napus HOM05D003759 ORTHO05D004149 1.4e-17 94.0 203 36.9
BolC2t07494H Brassica oleracea HOM05D003759 ORTHO05D004149 1.4e-17 94.0 203 36.9
BraA02t05884Z Brassica rapa HOM05D003759 ORTHO05D004149 1.4e-17 94.0 201 36.8
AT5G57910 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 1.9e-17 93.6 207 33.8
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 4.2e-17 92.4 221 36.7
THA.LOC104813538 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 5.4e-17 92.0 211 34.6
BolC3t13911H Brassica oleracea HOM05D003759 ORTHO05D004149 7.1e-17 91.7 208 35.6
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 7.1e-17 91.7 249 33.3
MELO3C010213.2 Cucumis melo HOM05D003759 ORTHO05D004149 9.3e-17 91.3 247 33.2
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 9.3e-17 91.3 241 34.0
CsaV3_1G029030 Cucumis sativus L. HOM05D003759 ORTHO05D004149 1.2e-16 90.9 246 32.9
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 1.2e-16 90.9 238 33.2
Glyma.17G073100 Glycine max HOM05D003759 ORTHO05D004149 1.2e-16 90.9 248 34.3
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 1.2e-16 90.9 210 36.2
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 1.6e-16 90.5 246 32.9
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 2.1e-16 90.1 248 32.3
VMungo1309G0866 Vigna mungo HOM05D003759 ORTHO05D004149 2.1e-16 90.1 236 33.9
C03p14700 Brassica napus HOM05D003759 ORTHO05D004149 3.5e-16 89.4 208 35.1
CARHR271690 Cardamine hirsuta HOM05D003759 ORTHO05D004149 3.5e-16 89.4 211 35.5
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 3.5e-16 89.4 220 34.1
Glyma.02G204900 Glycine max HOM05D003759 ORTHO05D004149 7.8e-16 88.2 249 33.7
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 7.8e-16 88.2 241 35.3
Ca_21134_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 1.7e-15 87.0 237 31.2
Ca_21136_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 1.7e-15 87.0 237 31.2
VMungo1215G0492 Vigna mungo HOM05D003759 ORTHO05D004149 1.7e-15 87.0 245 33.1
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 3.9e-15 85.9 241 32.8
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 5.1e-15 85.5 245 32.7
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 5.1e-15 85.5 238 33.2
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 5.1e-15 85.5 282 29.4
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 6.6e-15 85.1 242 31.8
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 1.9e-14 83.6 243 32.1
Migut.K00316 Erythranthe guttata HOM05D003759 ORTHO05D004149 1.9e-14 83.6 225 34.2
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 1.9e-14 83.6 187 33.2
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 1.9e-14 83.6 250 31.6
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 1.9e-14 83.6 242 33.5
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 2.5e-14 83.2 201 33.3
Phvul.009G204700 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 2.5e-14 83.2 232 31.9
CiPaw.15G166900 Carya illinoinensis HOM05D003759 ORTHO05D004149 3.3e-14 82.8 242 31.4
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 3.3e-14 82.8 282 29.1
Migut.J01364 Erythranthe guttata HOM05D003759 ORTHO05D004149 4.3e-14 82.4 268 31.0
TWI34G0689 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 4.3e-14 82.4 244 32.8
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 4.3e-14 82.4 294 28.2
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 5.6e-14 82.0 205 33.7
CiPaw.16G108400 Carya illinoinensis HOM05D003759 ORTHO05D004149 1.3e-13 80.9 236 29.2
Gohir.D08G273700 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.3e-13 80.9 241 32.0
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 1.3e-13 80.9 241 29.9
Peaxi162Scf00062g00131 Petunia axillaris HOM05D003759 ORTHO05D004149 1.6e-13 80.5 283 30.4
CAN.G551.47 Capsicum annuum HOM05D003759 ORTHO05D004149 2.1e-13 80.1 267 31.8
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 2.1e-13 80.1 259 30.5
Thecc.09G028600 Theobroma cacao HOM05D003759 ORTHO05D004149 2.1e-13 80.1 244 31.1
Lalb_Chr08g0234281 Lupinus albus HOM05D003759 ORTHO05D004149 2.8e-13 79.7 237 31.2
Rhsim03G0257600 Rhododendron simsii HOM05D003759 ORTHO05D004149 4.8e-13 79.0 299 30.1
Eucgr.C00252 Eucalyptus grandis HOM05D003759 ORTHO05D004149 6.2e-13 78.6 270 29.3
Gorai.004G292200 Gossypium raimondii HOM05D003759 ORTHO05D004149 6.2e-13 78.6 241 31.5
Lsat_1_v5_gn_7_50020 Lactuca sativa HOM05D003759 ORTHO05D004149 6.2e-13 78.6 232 31.5
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 6.2e-13 78.6 61 67.2
BraA03t10564Z Brassica rapa HOM05D003759 ORTHO05D004149 1.1e-12 77.8 208 32.2
Sed0003883 Sechium edule HOM05D003759 ORTHO05D004149 4.0e-12 75.9 147 36.1
Gohir.D07G031400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 5.3e-12 75.5 244 29.9
Gorai.001G032800 Gossypium raimondii HOM05D003759 ORTHO05D004149 5.3e-12 75.5 244 29.9
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 6.9e-12 75.1 202 30.7
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 6.9e-12 75.1 240 32.5
Aa31LG3G13740 Aethionema arabicum HOM05D003759 ORTHO05D004149 9.0e-12 74.7 206 31.6
Ciclev10009224m.g Citrus clementina HOM05D003759 ORTHO05D004149 9.0e-12 74.7 238 29.4
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 9.0e-12 74.7 231 30.3
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 1.2e-11 74.3 200 33.5
PGSC0003DMG400007832 Solanum tuberosum HOM05D003759 ORTHO05D004149 1.2e-11 74.3 280 28.6
SalBow1G3284 Salvia bowleyana HOM05D003759 ORTHO05D004149 1.5e-11 73.9 276 30.4
HanXRQChr09g0244591 Helianthus annuus HOM05D003759 ORTHO05D004149 3.4e-11 72.8 243 33.3
Sp6g19580 Schrenkiella parvula HOM05D003759 ORTHO05D004149 3.4e-11 72.8 174 35.1
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 3.4e-11 72.8 281 27.4
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 4.5e-11 72.4 245 30.6
arahy.Tifrunner.gnm1.ann1.5MW7KS Arachis hypogaea HOM05D003759 ORTHO05D004149 5.8e-11 72.0 244 28.7
COL.COLO4_18822 Corchorus olitorius HOM05D003759 ORTHO05D004149 5.8e-11 72.0 250 28.8
Oeu021304.1 Olea europaea HOM05D003759 ORTHO05D004149 5.8e-11 72.0 260 28.5
ClCG02G014430 Citrullus lanatus HOM05D003759 ORTHO05D004149 7.6e-11 71.6 243 31.3
Prupe.7G264400 Prunus persica HOM05D003759 ORTHO05D004149 7.6e-11 71.6 243 28.0
HPP92_018342 Vanilla planifolia HOM05D003759 ORTHO05D004149 7.6e-11 71.6 196 32.7
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.3e-10 70.9 153 33.3
BcaB01g04466 Brassica carinata HOM05D003759 ORTHO05D004149 1.3e-10 70.9 201 33.3
DCAR_014806 Daucus carota HOM05D003759 ORTHO05D004149 1.3e-10 70.9 276 27.2
TWI63G0632 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 1.3e-10 70.9 103 46.6
unitig_748.g7198 Utricularia gibba HOM05D003759 ORTHO05D004149 1.3e-10 70.9 226 27.9
arahy.Tifrunner.gnm1.ann1.WN4J7U Arachis hypogaea HOM05D003759 ORTHO05D004149 2.9e-10 69.7 243 27.6
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 2.9e-10 69.7 306 25.8
Gohir.A05G052900 Gossypium hirsutum HOM05D003759 ORTHO05D004149 2.9e-10 69.7 240 30.0
Lsat_1_v5_gn_5_90100 Lactuca sativa HOM05D003759 ORTHO05D004149 2.9e-10 69.7 189 34.9
FAN23G1979 Fragaria x ananassa HOM05D003759 ORTHO05D004149 3.8e-10 69.3 243 29.2
Gohir.A07G027400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 3.8e-10 69.3 244 28.7
Nitab4.5_0001571g0070 Nicotiana tabacum HOM05D003759 ORTHO05D004149 3.8e-10 69.3 278 29.5
Nitab4.5_0005869g0060 Nicotiana tabacum HOM05D003759 ORTHO05D004149 3.8e-10 69.3 276 29.3
SalBow1G6739 Salvia bowleyana HOM05D003759 ORTHO05D004149 3.8e-10 69.3 282 27.3
PGSC0003DMG400011142 Solanum tuberosum HOM05D003759 ORTHO05D004149 3.8e-10 69.3 284 28.5
CAN.G160.50 Capsicum annuum HOM05D003759 ORTHO05D004149 4.9e-10 68.9 278 28.8
Gohir.D05G054500 Gossypium hirsutum HOM05D003759 ORTHO05D004149 6.4e-10 68.6 241 29.5
Gorai.009G056200 Gossypium raimondii HOM05D003759 ORTHO05D004149 6.4e-10 68.6 240 28.8
FAN28G1366 Fragaria x ananassa HOM05D003759 ORTHO05D004149 1.1e-09 67.8 243 28.8
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.1e-09 67.8 280 30.4
Sed0022175 Sechium edule HOM05D003759 ORTHO05D004149 1.1e-09 67.8 133 35.3
MSTRG.6151 Avicennia marina HOM05D003759 ORTHO05D004149 1.9e-09 67.0 283 26.5
MD02G1006500 Malus domestica HOM05D003759 ORTHO05D004149 2.4e-09 66.6 242 28.5
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 3.2e-09 66.2 191 31.9
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 4.2e-09 65.9 111 40.5
RcHm_v2.0_Chr2g0085521 Rosa chinensis HOM05D003759 ORTHO05D004149 4.2e-09 65.9 243 27.2
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 5.4e-09 65.5 246 29.7
Prupe.1G394700 Prunus persica HOM05D008192 ORTHO05D010301 5.4e-09 65.5 200 31.5
AL8G33980 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 1.6e-08 63.9 188 30.9
HanXRQChr03g0065561 Helianthus annuus HOM05D003759 ORTHO05D004149 1.6e-08 63.9 251 28.3
Nitab4.5_0008875g0010 Nicotiana tabacum HOM05D003759 ORTHO05D004149 4.6e-08 62.4 279 29.0
Sopen07g001800 Solanum pennellii HOM05D003759 ORTHO05D004149 6.0e-08 62.0 285 29.1
Actinidia01426 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.0e-07 61.2 65 50.8
FvH4_1g00810 Fragaria vesca HOM05D003759 ORTHO05D004149 1.0e-07 61.2 243 28.0
FAN27G3331 Fragaria x ananassa HOM05D002088 ORTHO05D002204 1.0e-07 61.2 96 37.5
Zm00001eb412280 Zea mays HOM05D037779 ORTHO05D004149 1.0e-07 61.2 197 27.9
FAN15G3555 Fragaria x ananassa HOM05D002088 ORTHO05D002204 1.3e-07 60.8 96 37.5
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 1.8e-07 60.5 282 25.9
MELO3C004129.2 Cucumis melo HOM05D003759 ORTHO05D004149 1.8e-07 60.5 262 28.6
FvH4_2g41181 Fragaria vesca HOM05D008192 ORTHO05D010301 1.8e-07 60.5 96 37.5
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 2.3e-07 60.1 58 53.4
unitig_0.g2686 Utricularia gibba HOM05D003759 ORTHO05D004149 2.3e-07 60.1 248 28.6
HPP92_010344 Vanilla planifolia HOM05D045913 ORTHO05D004149 2.3e-07 60.1 212 29.7
FAN20G1545 Fragaria x ananassa HOM05D008192 ORTHO05D010301 3.0e-07 59.7 96 36.5
Hma1.2p1_0222F.1_g093656 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 5.1e-07 58.9 92 42.4
Hma1.2p1_2680F.1_g326800 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 5.1e-07 58.9 92 42.4
Oeu028997.1 Olea europaea HOM05D003759 ORTHO05D004149 6.7e-07 58.5 204 31.4
Os08g0270800 Oryza sativa ssp. japonica HOM05D037779 ORTHO05D004149 6.7e-07 58.5 196 31.1
MD15G1041800 Malus domestica HOM05D008192 ORTHO05D010301 8.7e-07 58.2 84 44.0
RcHm_v2.0_Chr6g0299341 Rosa chinensis HOM05D008192 ORTHO05D010301 8.7e-07 58.2 96 36.5
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.5e-06 57.4 55 54.5
Solyc07g005690.3 Solanum lycopersicum HOM05D003759 ORTHO05D004149 1.5e-06 57.4 286 29.0
GSVIVG01035976001 Vitis vinifera HOM05D008192 ORTHO05D010301 1.9e-06 57.0 65 53.8
AUR62024800 Chenopodium quinoa HOM05D008192 ORTHO05D010301 2.5e-06 56.6 190 30.5
Dinv08187 Davidia involucrata HOM05D008192 ORTHO05D010301 2.5e-06 56.6 193 31.6
Peaxi162Scf00401g00425 Petunia axillaris HOM05D003759 ORTHO05D004149 2.5e-06 56.6 82 42.7
Oeu026461.3 Olea europaea HOM05D003759 ORTHO05D004149 3.3e-06 56.2 290 25.9
Ciclev10009717m.g Citrus clementina HOM05D008192 ORTHO05D010301 4.3e-06 55.8 67 50.7
Haze_21404 Corylus avellana HOM05D008192 ORTHO05D010301 4.3e-06 55.8 194 28.4
DCAR_021655 Daucus carota HOM05D002201 ORTHO05D007560 7.4e-06 55.1 99 35.4
Gohir.A05G060200 Gossypium hirsutum HOM05D008192 ORTHO05D010301 7.4e-06 55.1 193 28.0


User provided reference genes

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