Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p59500 Brassica napus HOM05D004939 ORTHO05D005843 2.8e-37 157.9 71 100.0
BcaC09g49204 Brassica carinata HOM05D004939 ORTHO05D005843 2.2e-13 78.6 38 86.8
C01p41420 Brassica napus HOM05D004939 ORTHO05D005843 2.2e-13 78.6 35 94.3
BolC1t04101H Brassica oleracea HOM05D004939 ORTHO05D005843 2.2e-13 78.6 38 86.8
BcaB02g10574 Brassica carinata HOM05D004939 ORTHO05D005843 2.9e-13 78.2 38 81.6
BraA02t08500Z Brassica rapa HOM05D004939 ORTHO05D005843 4.9e-13 77.4 35 91.4
BcaC02g11440 Brassica carinata HOM05D004939 ORTHO05D005843 6.4e-13 77.0 38 81.6
A05p11970 Brassica napus HOM05D004939 ORTHO05D005843 6.4e-13 77.0 38 81.6
BraA05t20140Z Brassica rapa HOM05D004939 ORTHO05D005843 6.4e-13 77.0 38 81.6
A01p41950 Brassica napus HOM05D004939 ORTHO05D005843 1.1e-12 76.3 32 100.0
C06p34250 Brassica napus HOM05D004939 ORTHO05D005843 1.4e-12 75.9 35 88.6
Carub.0004s1519 Capsella rubella HOM05D004939 ORTHO05D005843 1.9e-12 75.5 38 81.6
Sp4g15900 Schrenkiella parvula HOM05D004939 ORTHO05D005843 1.9e-12 75.5 38 81.6
BcaC02g07802 Brassica carinata HOM05D004939 ORTHO05D005843 3.2e-12 74.7 38 78.9
BcaC03g13999 Brassica carinata HOM05D004939 ORTHO05D005843 3.2e-12 74.7 35 88.6
C02p12380 Brassica napus HOM05D004939 ORTHO05D005843 3.2e-12 74.7 35 88.6
CARHR127580 Cardamine hirsuta HOM05D004939 ORTHO05D005843 4.1e-12 74.3 35 88.6
C04p15520 Brassica napus HOM05D004939 ORTHO05D005843 5.4e-12 73.9 38 78.9
BolC4t23123H Brassica oleracea HOM05D004939 ORTHO05D005843 5.4e-12 73.9 38 78.9
AL4G29230 Arabidopsis lyrata HOM05D004939 ORTHO05D005843 7.1e-12 73.6 38 78.9
BolC6t38544H Brassica oleracea HOM05D004939 ORTHO05D005843 7.1e-12 73.6 35 88.6
BcaC08g45668 Brassica carinata HOM05D004939 ORTHO05D005843 9.2e-12 73.2 38 81.6
Sabra05G0200000 Salix brachista HOM05D004939 ORTHO05D005843 1.2e-11 72.8 51 64.7
BcaB06g28697 Brassica carinata HOM05D004939 ORTHO05D005843 1.6e-11 72.4 38 76.3
C05p49160 Brassica napus HOM05D004939 ORTHO05D005843 2.1e-11 72.0 35 88.6
Aa31LG9G13490 Aethionema arabicum HOM05D004939 ORTHO05D005843 6.0e-11 70.5 38 73.7
Potri.005G258300 Populus trichocarpa HOM05D004939 ORTHO05D005843 6.0e-11 70.5 35 82.9
AT2G33560 Arabidopsis thaliana HOM05D004939 ORTHO05D005843 1.7e-10 68.9 38 73.7
DCAR_023017 Daucus carota HOM05D004939 ORTHO05D005843 2.3e-10 68.6 35 80.0
THA.LOC104805020 Tarenaya hassleriana HOM05D004939 ORTHO05D005843 3.0e-10 68.2 38 68.4
Migut.N02996 Erythranthe guttata HOM05D004939 ORTHO05D005843 5.1e-10 67.4 35 80.0
unitig_85.g27224 Utricularia gibba HOM05D004939 ORTHO05D005843 5.1e-10 67.4 38 71.1
SalBow6G2808 Salvia bowleyana HOM05D004939 ORTHO05D005843 6.6e-10 67.0 35 80.0
Thhalv10016779m.g Eutrema salsugineum HOM05D004939 ORTHO05D005843 8.6e-10 66.6 38 71.1
Psat6g131960 Pisum sativum HOM05D004939 ORTHO05D005843 8.6e-10 66.6 37 70.3
Rhsim06G0001700 Rhododendron simsii HOM05D004939 ORTHO05D005843 1.5e-09 65.9 35 74.3
TAR625G0897 Trochodendron aralioides HOM05D004939 ORTHO05D005843 1.9e-09 65.5 35 74.3
Actinidia37902 Actinidia chinensis HOM05D004939 ORTHO05D005843 2.5e-09 65.1 35 71.4
Lj4A813T64 Lonicera japonica HOM05D004939 ORTHO05D005843 2.5e-09 65.1 35 74.3
Glyma.07G159700 Glycine max HOM05D004939 ORTHO05D005843 3.3e-09 64.7 37 70.3
Glyma.20G006600 Glycine max HOM05D004939 ORTHO05D005843 3.3e-09 64.7 37 70.3
VMungo1215G1457 Vigna mungo HOM05D004939 ORTHO05D005843 3.3e-09 64.7 34 76.5
Eucgr.F03614 Eucalyptus grandis HOM05D004939 ORTHO05D005843 4.3e-09 64.3 38 65.8
PGR031G2869 Punica granatum HOM05D004939 ORTHO05D005843 4.3e-09 64.3 38 63.2
Prupe.5G002900 Prunus persica HOM05D004939 ORTHO05D005843 5.6e-09 63.9 38 63.2
SGA_v2.0_scaffold227G43179 Striga asiatica HOM05D004939 ORTHO05D005843 5.6e-09 63.9 38 65.8
HanXRQChr14g0427951 Helianthus annuus HOM05D004939 ORTHO05D005843 7.3e-09 63.5 42 59.5
GSVIVG01013446001 Vitis vinifera HOM05D004939 ORTHO05D005843 7.3e-09 63.5 34 76.5
Ca_12499_v3 Cicer arietinum L. HOM05D004939 ORTHO05D005843 9.5e-09 63.2 34 70.6
Lsat_1_v5_gn_2_3201 Lactuca sativa HOM05D004939 ORTHO05D005843 9.5e-09 63.2 35 71.4
Potri.002G002900 Populus trichocarpa HOM05D004939 ORTHO05D005843 9.5e-09 63.2 34 76.5
TWI56G0687 Tripterygium wilfordii HOM05D004939 ORTHO05D005843 9.5e-09 63.2 37 64.9
FvH4_5g26460 Fragaria vesca HOM05D004939 ORTHO05D005843 1.2e-08 62.8 37 64.9
FAN13G2929 Fragaria x ananassa HOM05D004939 ORTHO05D005843 1.2e-08 62.8 37 64.9
FAN18G1404 Fragaria x ananassa HOM05D004939 ORTHO05D005843 1.2e-08 62.8 37 64.9
Lj2g0017318 Lotus japonicus HOM05D004939 ORTHO05D005843 1.2e-08 62.8 34 67.6
Lalb_Chr10g0095291 Lupinus albus HOM05D004939 ORTHO05D005843 1.2e-08 62.8 34 73.5
RcHm_v2.0_Chr7g0217371 Rosa chinensis HOM05D004939 ORTHO05D005843 1.2e-08 62.8 37 64.9
Hma1.2p1_0914F.1_g236160 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 1.6e-08 62.4 34 67.6
Hma1.2p1_0914F.1_g236170 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 1.6e-08 62.4 34 67.6
Medtr1g035090 Medicago truncatula HOM05D004939 ORTHO05D005843 1.6e-08 62.4 37 64.9
CSS0014437 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 2.1e-08 62.0 41 68.3
CSS0031643 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 2.1e-08 62.0 41 68.3
Cfa014153 Carpinus fangiana HOM05D004939 ORTHO05D005843 2.1e-08 62.0 34 73.5
Haze_22877 Corylus avellana HOM05D004939 ORTHO05D005843 2.1e-08 62.0 34 73.5
MBI04_g18018_MAGBIO Magnolia biondii HOM05D004939 ORTHO05D005843 2.1e-08 62.0 35 71.4
Sabra02G0001700 Salix brachista HOM05D004939 ORTHO05D005843 2.1e-08 62.0 34 73.5
Dinv23346 Davidia involucrata HOM05D004939 ORTHO05D005843 2.8e-08 61.6 34 73.5
Gohir.A05G282600 Gossypium hirsutum HOM05D004939 ORTHO05D005843 2.8e-08 61.6 34 73.5
Gohir.D05G283800 Gossypium hirsutum HOM05D004939 ORTHO05D005843 2.8e-08 61.6 34 73.5
Gohir.D05G283802 Gossypium hirsutum HOM05D004939 ORTHO05D005843 2.8e-08 61.6 34 73.5
Gorai.009G298300 Gossypium raimondii HOM05D004939 ORTHO05D005843 2.8e-08 61.6 34 73.5
CANSAT11G2529 Cannabis sativa HOM05D004939 ORTHO05D005843 3.6e-08 61.2 37 64.9
CiPaw.07G131300 Carya illinoinensis HOM05D004939 ORTHO05D005843 3.6e-08 61.2 34 70.6
Duzib128G1725 Durio zibethinus HOM05D004939 ORTHO05D005843 3.6e-08 61.2 34 73.5
MSTRG.22074 Avicennia marina HOM05D004939 ORTHO05D005843 4.7e-08 60.8 37 64.9
FAN08G1940 Fragaria x ananassa HOM05D004939 ORTHO05D005843 4.7e-08 60.8 37 64.9
Lalb_Chr17g0338141 Lupinus albus HOM05D004939 ORTHO05D005843 4.7e-08 60.8 34 67.6
Manes.05G129700 Manihot esculenta HOM05D004939 ORTHO05D005843 4.7e-08 60.8 41 63.4
Phvul.003G009000 Phaseolus vulgaris HOM05D004939 ORTHO05D005843 4.7e-08 60.8 33 72.7
CAN.G1330.25 Capsicum annuum HOM05D004939 ORTHO05D005843 8.1e-08 60.1 37 64.9
Cc10_g00160 Coffea canephora HOM05D004939 ORTHO05D005843 8.1e-08 60.1 34 70.6
Nn5g31070 Nelumbo nucifera HOM05D004939 ORTHO05D005843 8.1e-08 60.1 35 65.7
Os02g0193600 Oryza sativa ssp. japonica HOM05D004939 ORTHO05D005843 8.1e-08 60.1 35 68.6
FAN04G1628 Fragaria x ananassa HOM05D004939 ORTHO05D005843 1.1e-07 59.7 37 62.2
QL02p016036 Quercus lobata HOM05D004939 ORTHO05D005843 1.1e-07 59.7 34 70.6
Sopen04g036540 Solanum pennellii HOM05D004939 ORTHO05D005843 1.1e-07 59.7 37 62.2
Thecc.10G149200 Theobroma cacao HOM05D004939 ORTHO05D005843 1.1e-07 59.7 34 70.6
TPR.G22378 Trifolium pratense HOM05D004939 ORTHO05D005843 1.1e-07 59.7 37 59.5
Aqoxy6G03042 Aquilegia oxysepala HOM05D004939 ORTHO05D005843 1.4e-07 59.3 34 70.6
arahy.Tifrunner.gnm1.ann1.6I9FYE Arachis hypogaea HOM05D004939 ORTHO05D005843 1.4e-07 59.3 34 70.6
arahy.Tifrunner.gnm1.ann1.V9NZM2 Arachis hypogaea HOM05D004939 ORTHO05D005843 1.4e-07 59.3 34 70.6
PSO017G2996 Papaver somniferum HOM05D004939 ORTHO05D005843 1.4e-07 59.3 35 68.6
PSO170G6093 Papaver somniferum HOM05D004939 ORTHO05D005843 1.4e-07 59.3 35 68.6
MD00G1178400 Malus domestica HOM05D004939 ORTHO05D005843 1.8e-07 58.9 33 69.7
Peaxi162Scf00385g00719 Petunia axillaris HOM05D004939 ORTHO05D005843 1.8e-07 58.9 37 59.5
Sc02g0009340 Simmondsia chinensis HOM05D004939 ORTHO05D005843 1.8e-07 58.9 34 70.6
Solyc04g082900.4 Solanum lycopersicum HOM05D004939 ORTHO05D005843 1.8e-07 58.9 37 59.5
ATR0605G152 Amborella trichopoda HOM05D004939 ORTHO05D005843 2.4e-07 58.5 34 70.6
Ciclev10001515m.g Citrus clementina HOM05D004939 ORTHO05D005843 2.4e-07 58.5 34 67.6
TAR381G1514 Trochodendron aralioides HOM05D000924 ORTHO05D001209 3.1e-07 58.2 34 67.6
MELO3C017066.2 Cucumis melo HOM05D004939 ORTHO05D005843 4.0e-07 57.8 34 67.6
CsaV3_4G037720 Cucumis sativus L. HOM05D004939 ORTHO05D005843 4.0e-07 57.8 34 67.6
Sed0003879 Sechium edule HOM05D004939 ORTHO05D005843 4.0e-07 57.8 41 61.0
PGSC0003DMG400010009 Solanum tuberosum HOM05D004939 ORTHO05D005843 4.0e-07 57.8 37 59.5
ECA238G2856 Erigeron canadensis HOM05D004939 ORTHO05D005843 5.2e-07 57.4 36 61.1
Zm00001eb236510 Zea mays HOM05D004939 ORTHO05D005843 5.2e-07 57.4 37 64.9
Nitab4.5_0000464g0110 Nicotiana tabacum HOM05D004939 ORTHO05D005843 6.8e-07 57.0 37 59.5
SEGI_14150 Sequoiadendron giganteum HOM05D004939 ORTHO05D005843 6.8e-07 57.0 37 62.2
ClCG11G019130 Citrullus lanatus HOM05D004939 ORTHO05D005843 2.6e-06 55.1 34 64.7


User provided reference genes

Program Settings