Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p59470 Brassica napus HOM05D016253 ORTHO05D000675 1.7e-85 319.3 163 100.0
C07p40370 Brassica napus HOM05D000738 ORTHO05D000675 1.2e-67 260.0 183 80.3
BcaNung02089 Brassica carinata HOM05D000738 ORTHO05D000675 1.0e-66 256.9 183 80.3
BolC7t44571H Brassica oleracea HOM05D000738 ORTHO05D000675 1.4e-66 256.5 183 79.8
A06p37870 Brassica napus HOM05D000738 ORTHO05D000675 6.7e-66 254.2 183 79.8
BraA06t26705Z Brassica rapa HOM05D000738 ORTHO05D000675 6.7e-66 254.2 183 79.8
A09p19170 Brassica napus HOM05D016253 ORTHO05D041011 1.7e-56 223.0 154 77.9
BraA09t37535Z Brassica rapa HOM05D016253 ORTHO05D041011 1.7e-56 223.0 149 79.9
Thhalv10003908m.g Eutrema salsugineum HOM05D000738 ORTHO05D000675 3.5e-54 215.3 189 70.4
BcaNung01732 Brassica carinata HOM05D000738 ORTHO05D000675 8.5e-53 210.7 193 72.0
AL6G40490 Arabidopsis lyrata HOM05D000738 ORTHO05D000675 4.2e-52 208.4 189 69.3
AT5G28290 Arabidopsis thaliana HOM05D000738 ORTHO05D000675 5.5e-52 208.0 188 68.6
Carub.0006s2569 Capsella rubella HOM05D000738 ORTHO05D000675 5.5e-52 208.0 189 69.3
Sp2g20220 Schrenkiella parvula HOM05D000738 ORTHO05D000675 5.2e-50 201.4 189 67.7
A02p38450 Brassica napus HOM05D000738 ORTHO05D000675 1.1e-49 200.3 188 66.0
BraA02t08823Z Brassica rapa HOM05D000738 ORTHO05D000675 9.7e-49 197.2 188 64.9
CARHR185090 Cardamine hirsuta HOM05D000738 ORTHO05D000675 3.1e-47 192.2 185 64.3
BcaB07g34184 Brassica carinata HOM05D000738 ORTHO05D000675 2.2e-45 186.0 192 62.5
BcaC03g17763 Brassica carinata HOM05D000738 ORTHO05D000675 1.1e-44 183.7 182 64.3
C02p57770 Brassica napus HOM05D000738 ORTHO05D000675 3.2e-44 182.2 189 63.0
Thhalv10020328m.g Eutrema salsugineum HOM05D000738 ORTHO05D000675 1.2e-30 137.1 174 51.1
AT3G04810 Arabidopsis thaliana HOM05D000738 ORTHO05D000675 1.3e-29 133.7 173 50.3
AL3G14970 Arabidopsis lyrata HOM05D000738 ORTHO05D000675 3.8e-29 132.1 165 51.5
BcaB04g19299 Brassica carinata HOM05D000738 ORTHO05D000675 6.6e-29 131.3 158 53.8
CARHR079060 Cardamine hirsuta HOM05D000738 ORTHO05D000675 6.6e-29 131.3 172 49.4
A03p33840 Brassica napus HOM05D000738 ORTHO05D000675 4.2e-28 128.6 160 53.1
BraA03t12558Z Brassica rapa HOM05D000738 ORTHO05D000675 4.2e-28 128.6 160 53.1
Sp3g03640 Schrenkiella parvula HOM05D000738 ORTHO05D000675 9.5e-28 127.5 173 50.9
Aa31LG5G15200 Aethionema arabicum HOM05D000738 ORTHO05D000675 1.2e-27 127.1 178 50.0
Carub.0003s0399 Capsella rubella HOM05D000738 ORTHO05D000675 1.6e-27 126.7 172 48.8
A05p42770 Brassica napus HOM05D000738 ORTHO05D000675 5.7e-25 118.2 161 49.1
BolC5t34902H Brassica oleracea HOM05D000738 ORTHO05D000675 9.8e-25 117.5 125 58.4
C05p62490 Brassica napus HOM05D000738 ORTHO05D000675 4.9e-24 115.2 160 48.8
C03p41150 Brassica napus HOM05D000738 ORTHO05D000675 5.4e-23 111.7 212 42.0
BcaC01g04348 Brassica carinata HOM05D000738 ORTHO05D000675 7.0e-23 111.3 212 42.0
BolC3t16403H Brassica oleracea HOM05D000738 ORTHO05D000675 1.2e-22 110.5 161 48.4
BraA05t22976Z Brassica rapa HOM05D000738 ORTHO05D000675 1.3e-21 107.1 117 58.1
THA.LOC104821679 Tarenaya hassleriana HOM05D000738 ORTHO05D000675 1.5e-20 103.6 169 46.2
QL03p024954 Quercus lobata HOM05D000738 ORTHO05D000675 4.1e-15 85.5 154 48.1
GSVIVG01021831001 Vitis vinifera HOM05D000738 ORTHO05D000675 3.5e-14 82.4 146 45.9
Cfa006450 Carpinus fangiana HOM05D000738 ORTHO05D000675 3.0e-13 79.3 157 45.2
Cpa.g.sc117.74 Carica papaya HOM05D000738 ORTHO05D000675 1.5e-12 77.0 136 44.1
Haze_04342 Corylus avellana HOM05D000738 ORTHO05D000675 2.5e-12 76.3 157 44.6
Dinv17779 Davidia involucrata HOM05D000738 ORTHO05D000675 4.3e-12 75.5 174 39.1
Sed0009843 Sechium edule HOM05D000738 ORTHO05D000675 1.2e-11 73.9 142 43.7
Duzib106G0908 Durio zibethinus HOM05D000738 ORTHO05D000675 1.6e-11 73.6 173 39.9
vmacro19688 Vaccinium macrocarpon HOM05D000738 ORTHO05D000675 1.6e-11 73.6 148 40.5
Rhsim05G0161000 Rhododendron simsii HOM05D000738 ORTHO05D000675 2.8e-11 72.8 148 41.2
arahy.Tifrunner.gnm1.ann1.K537LL Arachis hypogaea HOM05D000738 ORTHO05D000675 3.6e-11 72.4 146 41.1
Prupe.6G341100 Prunus persica HOM05D000738 ORTHO05D000675 3.6e-11 72.4 154 42.2
Atru.chr2.788 Acer truncatum HOM05D000738 ORTHO05D000675 4.7e-11 72.0 142 43.0
Potri.013G039000 Populus trichocarpa HOM05D000738 ORTHO05D000675 4.7e-11 72.0 178 38.2
CsaV3_2G004270 Cucumis sativus L. HOM05D000738 ORTHO05D000675 6.2e-11 71.6 143 42.0
MELO3C004367.2 Cucumis melo HOM05D000738 ORTHO05D000675 8.0e-11 71.2 143 42.0
CiPaw.08G125000 Carya illinoinensis HOM05D000738 ORTHO05D000675 1.1e-10 70.9 163 41.7
ClCG02G016490 Citrullus lanatus HOM05D000738 ORTHO05D000675 1.1e-10 70.9 143 42.0
FAN02G3006 Fragaria x ananassa HOM05D000738 ORTHO05D000675 1.4e-10 70.5 142 43.0
Sed0001475 Sechium edule HOM05D000738 ORTHO05D000675 1.4e-10 70.5 138 39.9
Dinv02203 Davidia involucrata HOM05D000738 ORTHO05D000675 1.8e-10 70.1 177 39.0
Gorai.007G283900 Gossypium raimondii HOM05D000738 ORTHO05D000675 2.3e-10 69.7 169 38.5
Ah.06g192210 Amaranthus hybridus HOM05D002035 ORTHO05D002032 3.1e-10 69.3 153 39.9
COL.COLO4_15301 Corchorus olitorius HOM05D000738 ORTHO05D000675 3.1e-10 69.3 171 38.0
Gohir.A11G254100 Gossypium hirsutum HOM05D000738 ORTHO05D000675 3.1e-10 69.3 169 40.8
Gohir.D11G263900 Gossypium hirsutum HOM05D000738 ORTHO05D000675 3.1e-10 69.3 169 38.5
Thecc.05G287100 Theobroma cacao HOM05D000738 ORTHO05D000675 5.2e-10 68.6 171 39.8
arahy.Tifrunner.gnm1.ann1.LCP7TV Arachis hypogaea HOM05D000738 ORTHO05D000675 6.8e-10 68.2 146 39.7
Duzib177G0510 Durio zibethinus HOM05D000738 ORTHO05D000675 8.9e-10 67.8 169 37.3
Ciclev10000599m.g Citrus clementina HOM05D000738 ORTHO05D000675 1.2e-09 67.4 163 41.7
PGR004G2351 Punica granatum HOM05D000738 ORTHO05D000675 1.2e-09 67.4 129 43.4
AT1G54510 Arabidopsis thaliana HOM05D000738 ORTHO05D000675 1.5e-09 67.0 131 40.5
SpUn0001_0700 Schrenkiella parvula HOM05D000738 ORTHO05D000675 2.0e-09 66.6 181 35.4
CiPaw.07G065100 Carya illinoinensis HOM05D000738 ORTHO05D000675 3.4e-09 65.9 154 41.6
Eucgr.H04382 Eucalyptus grandis HOM05D000738 ORTHO05D000675 3.4e-09 65.9 155 39.4
CSS0035684 Camellia sinensis var. sinensis HOM05D000738 ORTHO05D000675 4.4e-09 65.5 182 36.8
Gohir.D13G176000 Gossypium hirsutum HOM05D000738 ORTHO05D000675 4.4e-09 65.5 169 38.5
FAN05G0257 Fragaria x ananassa HOM05D000738 ORTHO05D000675 5.8e-09 65.1 140 40.7
Gorai.013G201300 Gossypium raimondii HOM05D000738 ORTHO05D000675 5.8e-09 65.1 169 38.5
MBI11_g29746_MAGBIO Magnolia biondii HOM05D000738 ORTHO05D000675 5.8e-09 65.1 147 36.1
RcHm_v2.0_Chr3g0451761 Rosa chinensis HOM05D000738 ORTHO05D000675 5.8e-09 65.1 140 40.7
Carub.0002s0933 Capsella rubella HOM05D000738 ORTHO05D000675 7.5e-09 64.7 152 38.2
FAN05G2879 Fragaria x ananassa HOM05D000738 ORTHO05D000675 7.5e-09 64.7 140 40.7
Gohir.A13G170500 Gossypium hirsutum HOM05D000738 ORTHO05D000675 7.5e-09 64.7 169 38.5
THA.LOC104823428 Tarenaya hassleriana HOM05D000738 ORTHO05D000675 7.5e-09 64.7 146 41.8
AL1G64920 Arabidopsis lyrata HOM05D000738 ORTHO05D000675 9.8e-09 64.3 129 38.8
FvH4_6g03300 Fragaria vesca HOM05D000738 ORTHO05D000675 9.8e-09 64.3 140 40.7
FAN14G2261 Fragaria x ananassa HOM05D000738 ORTHO05D000675 9.8e-09 64.3 140 40.7
Psat6g146600 Pisum sativum HOM05D000738 ORTHO05D000675 9.8e-09 64.3 158 39.9
Hund06959 Selenicereus undatus HOM05D000738 ORTHO05D000675 1.3e-08 63.9 139 40.3
AUR62004924 Chenopodium quinoa HOM05D000738 ORTHO05D000675 1.7e-08 63.5 138 40.6
FAN09G4489 Fragaria x ananassa HOM05D000738 ORTHO05D000675 1.7e-08 63.5 140 40.0
Os12g0604700 Oryza sativa ssp. japonica HOM05D000738 ORTHO05D000675 3.7e-08 62.4 131 45.0
MD04G1222000 Malus domestica HOM05D000738 ORTHO05D000675 4.9e-08 62.0 140 43.6
Manes.09G154500 Manihot esculenta HOM05D000738 ORTHO05D000675 4.9e-08 62.0 139 41.7
EL10Ac4g09111 Beta vulgaris HOM05D000738 ORTHO05D000675 6.4e-08 61.6 142 40.1
Sabra02G0040200 Salix brachista HOM05D000738 ORTHO05D000675 6.4e-08 61.6 152 36.8
Sabra13G0036400 Salix brachista HOM05D000738 ORTHO05D000675 6.4e-08 61.6 148 37.2
TAR362G0933 Trochodendron aralioides HOM05D000738 ORTHO05D000675 6.4e-08 61.6 178 35.4
Aa31LG2G12280 Aethionema arabicum HOM05D000738 ORTHO05D000675 1.1e-07 60.8 149 37.6
Lsat_1_v5_gn_2_66741 Lactuca sativa HOM05D000738 ORTHO05D000675 1.1e-07 60.8 150 40.0
MD12G1238200 Malus domestica HOM05D000738 ORTHO05D000675 1.4e-07 60.5 142 41.5
Potri.002G049400 Populus trichocarpa HOM05D000738 ORTHO05D000675 1.9e-07 60.1 154 35.1
Actinidia33533 Actinidia chinensis HOM05D000738 ORTHO05D000675 2.4e-07 59.7 118 39.0
Lj2A1167T97 Lonicera japonica HOM05D000738 ORTHO05D000675 2.4e-07 59.7 167 38.3
Sabra05G0045400 Salix brachista HOM05D000738 ORTHO05D000675 2.4e-07 59.7 141 42.6
HPP92_017649 Vanilla planifolia HOM05D000738 ORTHO05D000675 2.4e-07 59.7 154 40.9
AUR62001028 Chenopodium quinoa HOM05D000738 ORTHO05D000675 3.2e-07 59.3 154 39.0
Manes.08G132600 Manihot esculenta HOM05D000738 ORTHO05D000675 3.2e-07 59.3 134 41.8
GSVIVG01001199001 Vitis vinifera HOM05D000738 ORTHO05D000675 3.2e-07 59.3 146 38.4
Cfa006183 Carpinus fangiana HOM05D000738 ORTHO05D000675 4.1e-07 58.9 125 40.0
Lalb_Chr21g0310951 Lupinus albus HOM05D000738 ORTHO05D000675 4.1e-07 58.9 150 38.0
PSO832G1091 Papaver somniferum HOM05D000738 ORTHO05D000675 4.1e-07 58.9 115 39.1
Actinidia21139 Actinidia chinensis HOM05D000738 ORTHO05D000675 5.4e-07 58.5 154 37.7
THA.LOC104823754 Tarenaya hassleriana HOM05D000738 ORTHO05D000675 5.4e-07 58.5 142 39.4
Haze_04661 Corylus avellana HOM05D000738 ORTHO05D000675 7.1e-07 58.2 125 39.2
Nn6g34146 Nelumbo nucifera HOM05D000738 ORTHO05D000675 7.1e-07 58.2 161 36.6
Nitab4.5_0000678g0040 Nicotiana tabacum HOM05D000738 ORTHO05D000675 7.1e-07 58.2 159 37.7
Zm00001eb135710 Zea mays HOM05D000738 ORTHO05D000675 7.1e-07 58.2 110 40.9
CAN.G134.112 Capsicum annuum HOM05D000738 ORTHO05D000675 9.2e-07 57.8 180 35.0
Lalb_Chr02g0148741 Lupinus albus HOM05D000738 ORTHO05D000675 9.2e-07 57.8 140 35.7
Nn1g02417 Nelumbo nucifera HOM05D000738 ORTHO05D000675 1.2e-06 57.4 179 34.6
CSS0003940 Camellia sinensis var. sinensis HOM05D000738 ORTHO05D000675 1.6e-06 57.0 157 39.5
Cc02_g31860 Coffea canephora HOM05D000738 ORTHO05D000675 1.6e-06 57.0 187 36.9
PGSC0003DMG400019350 Solanum tuberosum HOM05D000738 ORTHO05D000675 1.6e-06 57.0 159 36.5
Glyma.03G246100 Glycine max HOM05D000738 ORTHO05D000675 2.1e-06 56.6 167 35.3
Nitab4.5_0000252g0150 Nicotiana tabacum HOM05D000738 ORTHO05D000675 2.1e-06 56.6 159 37.1
Sc20g0000290 Simmondsia chinensis HOM05D000738 ORTHO05D000675 2.1e-06 56.6 185 36.8
Solyc01g097500.4 Solanum lycopersicum HOM05D000738 ORTHO05D000675 2.1e-06 56.6 173 35.8
Glyma.20G224100 Glycine max HOM05D000738 ORTHO05D000675 2.7e-06 56.2 161 36.6
Medtr1g081000 Medicago truncatula HOM05D000738 ORTHO05D000675 2.7e-06 56.2 151 37.1
Sopen01g041160 Solanum pennellii HOM05D000738 ORTHO05D000675 3.5e-06 55.8 180 35.0
CAN.G433.13 Capsicum annuum HOM05D000738 ORTHO05D000675 6.0e-06 55.1 163 35.0
Glyma.10G161400 Glycine max HOM05D000738 ORTHO05D000675 6.0e-06 55.1 161 36.6
Oeu026337.1 Olea europaea HOM05D000738 ORTHO05D000675 6.0e-06 55.1 167 35.3
PSO210G2941 Papaver somniferum HOM05D000738 ORTHO05D000675 6.0e-06 55.1 115 38.3
Sc05g0001230 Simmondsia chinensis HOM05D000738 ORTHO05D000675 6.0e-06 55.1 100 42.0
TWI12G0659 Tripterygium wilfordii HOM05D000738 ORTHO05D000675 6.0e-06 55.1 164 38.4
vmacro14902 Vaccinium macrocarpon HOM05D000738 ORTHO05D000675 6.0e-06 55.1 166 35.5
Ca_08631_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 7.8e-06 54.7 108 41.7
Migut.D00337 Erythranthe guttata HOM05D000738 ORTHO05D000675 7.8e-06 54.7 121 38.8
Gohir.A12G003200 Gossypium hirsutum HOM05D000738 ORTHO05D000675 7.8e-06 54.7 161 37.3


User provided reference genes

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