Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 5.8e-112 407.5 201 100.0
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 2.2e-50 203.0 263 49.8
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 2.0e-48 196.4 262 49.6
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 2.7e-48 196.1 263 48.7
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 5.0e-47 191.8 260 48.5
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 2.8e-45 186.0 263 47.9
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 6.2e-45 184.9 265 47.2
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 1.1e-44 184.1 262 46.2
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 1.1e-44 184.1 262 46.2
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.8e-44 183.3 265 47.2
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 4.0e-44 182.2 264 47.0
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 6.8e-44 181.4 252 48.0
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 1.5e-43 180.3 265 46.8
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 4.4e-43 178.7 254 47.6
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 7.5e-43 177.9 267 45.7
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 4.9e-42 175.3 263 46.0
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-41 174.1 271 45.0
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.4e-41 173.7 131 71.8
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 1.9e-41 173.3 257 45.5
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 2.1e-40 169.9 267 44.9
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 2.1e-40 169.9 262 46.2
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.0e-35 153.3 263 41.8
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.0e-35 153.3 263 41.8
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 3.4e-35 152.5 270 43.0
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 5.8e-35 151.8 267 41.2
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 3.5e-32 142.5 265 41.1
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 3.0e-31 139.4 178 51.7
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 3.6e-29 132.5 267 38.6
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 3.6e-29 132.5 262 39.3
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.1e-28 131.0 263 38.8
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 1.1e-28 131.0 263 38.8
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 3.1e-28 129.4 265 39.2
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 7.6e-27 124.8 265 38.1
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 9.9e-27 124.4 265 37.7
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 1.3e-26 124.0 264 38.3
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 4.9e-26 122.1 259 37.5
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 2.4e-25 119.8 268 35.8
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 3.2e-25 119.4 258 38.0
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 3.2e-25 119.4 144 52.8
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 4.2e-25 119.0 276 34.4
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 4.2e-25 119.0 260 38.1
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 4.2e-25 119.0 144 52.1
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 4.2e-25 119.0 257 38.1
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 5.4e-25 118.6 266 36.5
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 7.1e-25 118.2 144 51.4
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 9.2e-25 117.9 274 36.9
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 2.7e-24 116.3 257 36.2
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 2.7e-24 116.3 266 37.2
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 4.6e-24 115.5 261 34.9
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 4.6e-24 115.5 144 51.4
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 6.0e-24 115.2 259 37.5
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 6.0e-24 115.2 144 51.4
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 6.0e-24 115.2 144 51.4
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 7.8e-24 114.8 268 37.7
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 7.8e-24 114.8 273 36.3
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 1.0e-23 114.4 271 38.0
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 1.3e-23 114.0 260 37.7
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 2.3e-23 113.2 280 35.4
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 2.3e-23 113.2 134 55.2
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 3.0e-23 112.8 258 36.8
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 3.0e-23 112.8 265 37.7
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.9e-23 112.5 133 51.9
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 5.1e-23 112.1 261 34.5
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 8.7e-23 111.3 259 35.1
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 1.9e-22 110.2 258 36.0
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 2.5e-22 109.8 265 34.3
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 4.3e-22 109.0 134 54.5
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 4.3e-22 109.0 135 51.1
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 5.6e-22 108.6 260 36.9
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 5.6e-22 108.6 260 36.9
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 7.3e-22 108.2 132 54.5
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 9.6e-22 107.8 133 54.9
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 1.2e-21 107.5 132 51.5
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 1.2e-21 107.5 258 34.9
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 1.2e-21 107.5 146 48.6
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 1.6e-21 107.1 131 51.9
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 2.8e-21 106.3 259 35.5
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 3.6e-21 105.9 258 35.7
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 4.7e-21 105.5 253 36.4
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.1e-20 104.4 267 34.1
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 1.1e-20 104.4 134 48.5
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.4e-20 104.0 268 34.7
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.8e-20 103.6 133 48.1
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 2.4e-20 103.2 133 48.1
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 2.4e-20 103.2 254 34.6
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 3.1e-20 102.8 273 35.5
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 4.0e-20 102.4 141 51.8
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 4.0e-20 102.4 151 46.4
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 5.3e-20 102.1 265 35.8
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 6.9e-20 101.7 131 48.1
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 9.0e-20 101.3 264 33.3
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 9.0e-20 101.3 157 44.6
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 1.2e-19 100.9 270 37.0
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 2.6e-19 99.8 133 47.4
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 4.4e-19 99.0 265 33.2
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 7.6e-19 98.2 139 47.5
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 7.6e-19 98.2 274 32.1
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 1.7e-18 97.1 276 33.0
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 2.2e-18 96.7 261 34.5
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 3.8e-18 95.9 272 32.7
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 3.8e-18 95.9 256 32.4
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 6.4e-18 95.1 142 45.1
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 6.4e-18 95.1 274 31.0
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 8.4e-18 94.7 148 46.6
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 1.4e-17 94.0 134 50.0
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 2.4e-17 93.2 263 33.1
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 5.4e-17 92.0 130 45.4
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 7.1e-17 91.7 139 45.3
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.1e-16 90.1 258 31.4
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 2.3e-15 86.7 265 32.8
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 1.9e-14 83.6 260 35.4
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 3.3e-14 82.8 172 37.8
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 3.3e-14 82.8 143 41.3
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 9.6e-14 81.3 132 43.2
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 1.3e-13 80.9 269 29.4
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 2.1e-13 80.1 149 37.6
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 1.1e-12 77.8 141 39.0
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 1.8e-12 77.0 132 40.9
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 6.9e-12 75.1 125 40.8
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 9.0e-12 74.7 145 35.9
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 9.0e-12 74.7 269 27.9
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 2.0e-11 73.6 134 36.6
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 3.4e-11 72.8 56 64.3
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 4.9e-10 68.9 263 27.0
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 8.4e-10 68.2 130 36.9
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-09 67.8 48 70.8
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 5.4e-09 65.5 153 32.7
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 9.3e-09 64.7 265 28.7
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 6.0e-08 62.0 185 31.9
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 7.9e-08 61.6 284 27.1
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.0e-07 61.2 51 60.8
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 1.0e-07 61.2 130 36.9
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.3e-07 60.8 130 29.2
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 3.0e-07 59.7 133 35.3
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.1e-06 57.8 136 33.1
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 1.5e-06 57.4 138 37.0
A02p05200 Brassica napus HOM05D059425 ORTHO05D041380 3.3e-06 56.2 38 73.7
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 4.3e-06 55.8 42 71.4


User provided reference genes

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