Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p59150 Brassica napus HOM05D000079 ORTHO05D003781 4.5e-80 301.2 155 100.0
BraA03t14974Z Brassica rapa HOM05D000079 ORTHO05D003781 4.5e-80 301.2 155 100.0
Sp7g27570 Schrenkiella parvula HOM05D000079 ORTHO05D003781 1.2e-51 206.8 141 77.3
Thhalv10027311m.g Eutrema salsugineum HOM05D000079 ORTHO05D003781 2.0e-51 206.1 140 77.1
Thhalv10027544m.g Eutrema salsugineum HOM05D000079 ORTHO05D003781 1.3e-50 203.4 144 75.0
AL7G22530 Arabidopsis lyrata HOM05D000079 ORTHO05D003781 6.6e-47 191.0 140 72.9
BcaB03g12618 Brassica carinata HOM05D000079 ORTHO05D003781 6.2e-45 184.5 141 67.4
BcaB03g12620 Brassica carinata HOM05D000079 ORTHO05D003781 3.4e-43 178.7 141 65.2
C03p89100 Brassica napus HOM05D000079 ORTHO05D003781 1.4e-41 173.3 141 64.5
C03p89110 Brassica napus HOM05D000079 ORTHO05D003781 1.4e-41 173.3 141 64.5
BolC3t21222H Brassica oleracea HOM05D000079 ORTHO05D003781 1.4e-41 173.3 141 64.5
BolC3t21223H Brassica oleracea HOM05D000079 ORTHO05D003781 1.4e-41 173.3 141 64.5
BcaC01g01188 Brassica carinata HOM05D000079 ORTHO05D003781 1.9e-41 172.9 141 63.8
Aa31LG8G11460 Aethionema arabicum HOM05D000079 ORTHO05D003781 1.6e-40 169.9 133 64.7
C07p57220 Brassica napus HOM05D000079 ORTHO05D003781 3.5e-40 168.7 140 62.9
BolC7t46192H Brassica oleracea HOM05D000079 ORTHO05D003781 3.5e-40 168.7 140 62.9
BcaNung00489 Brassica carinata HOM05D000079 ORTHO05D003781 4.6e-40 168.3 137 62.8
A03p59050 Brassica napus HOM05D000079 ORTHO05D003781 4.6e-40 168.3 140 62.1
BraA03t14965Z Brassica rapa HOM05D000079 ORTHO05D003781 4.6e-40 168.3 140 62.1
A03p59110 Brassica napus HOM05D000079 ORTHO05D003781 2.3e-39 166.0 132 64.4
A03p59140 Brassica napus HOM05D000079 ORTHO05D003781 2.3e-39 166.0 145 60.0
C07p57190 Brassica napus HOM05D000079 ORTHO05D003781 2.3e-39 166.0 140 61.4
BolC7t46189H Brassica oleracea HOM05D000079 ORTHO05D003781 2.3e-39 166.0 140 61.4
BraA03t14971Z Brassica rapa HOM05D000079 ORTHO05D003781 2.3e-39 166.0 132 64.4
BraA03t14973Z Brassica rapa HOM05D000079 ORTHO05D003781 2.3e-39 166.0 145 60.0
Sp7g27530 Schrenkiella parvula HOM05D000079 ORTHO05D003781 5.1e-39 164.9 132 62.1
AL4G16330 Arabidopsis lyrata HOM05D000079 ORTHO05D003781 6.6e-39 164.5 140 60.0
C07p57160 Brassica napus HOM05D000079 ORTHO05D003781 3.3e-38 162.2 132 62.1
BolC7t46186H Brassica oleracea HOM05D000079 ORTHO05D003781 3.3e-38 162.2 132 62.1
BcaNung00487 Brassica carinata HOM05D000079 ORTHO05D003781 4.3e-38 161.8 132 62.1
C07p57100 Brassica napus HOM05D000079 ORTHO05D003781 5.6e-38 161.4 140 60.7
BolC7t46181H Brassica oleracea HOM05D000079 ORTHO05D003781 5.6e-38 161.4 140 60.7
BcaB02g07754 Brassica carinata HOM05D000079 ORTHO05D003781 1.3e-37 160.2 144 59.0
Aa31LG8G11450 Aethionema arabicum HOM05D000079 ORTHO05D003781 1.1e-36 157.1 132 61.4
AT2G25150 Arabidopsis thaliana HOM05D000079 ORTHO05D003781 1.8e-36 156.4 140 57.9
Aa31LG2G20800 Aethionema arabicum HOM05D000079 ORTHO05D003781 1.2e-35 153.7 132 59.1
CARHR267230 Cardamine hirsuta HOM05D000079 ORTHO05D003781 6.4e-34 147.9 144 54.9
BcaC01g01181 Brassica carinata HOM05D000079 ORTHO05D003781 8.4e-34 147.5 136 55.1
C03p89160 Brassica napus HOM05D000079 ORTHO05D003781 8.4e-34 147.5 136 55.1
Aa31LG2G20770 Aethionema arabicum HOM05D000079 ORTHO05D003781 1.1e-33 147.1 154 53.9
Thhalv10026989m.g Eutrema salsugineum HOM05D000079 ORTHO05D003781 1.1e-33 147.1 145 57.2
BolC3t21228H Brassica oleracea HOM05D000079 ORTHO05D003781 1.4e-33 146.7 136 55.1
Thhalv10027408m.g Eutrema salsugineum HOM05D000079 ORTHO05D003781 1.4e-33 146.7 132 54.5
A08p19560 Brassica napus HOM05D000079 ORTHO05D003781 3.2e-33 145.6 136 54.4
BraA08t33915Z Brassica rapa HOM05D000079 ORTHO05D003781 3.2e-33 145.6 136 54.4
THA.LOC104819827 Tarenaya hassleriana HOM05D000079 ORTHO05D003781 3.9e-31 138.7 145 48.3
Carub.0004s0271 Capsella rubella HOM05D000079 ORTHO05D003781 8.7e-31 137.5 131 50.4
THA.LOC104806842 Tarenaya hassleriana HOM05D000079 ORTHO05D003781 2.8e-29 132.5 131 51.1
Carub.0004s0273 Capsella rubella HOM05D000079 ORTHO05D003781 1.5e-27 126.7 132 47.7
AL4G13490 Arabidopsis lyrata HOM05D000079 ORTHO05D003781 3.4e-27 125.6 132 47.0
Sp4g02470 Schrenkiella parvula HOM05D000079 ORTHO05D003781 3.4e-27 125.6 132 48.5
Carub.0004s0272 Capsella rubella HOM05D000079 ORTHO05D003781 1.3e-26 123.6 132 47.0
A09p56890 Brassica napus HOM05D000079 ORTHO05D003781 4.9e-26 121.7 132 48.5
AT2G23510 Arabidopsis thaliana HOM05D000079 ORTHO05D003781 1.1e-25 120.6 132 46.2
A08p10680 Brassica napus HOM05D000079 ORTHO05D003781 1.9e-25 119.8 132 47.0
BraA08t33066Z Brassica rapa HOM05D000079 ORTHO05D003781 1.9e-25 119.8 132 47.0
BcaC07g37769 Brassica carinata HOM05D000079 ORTHO05D003781 5.5e-25 118.2 132 47.0
BolC8t48155H Brassica oleracea HOM05D000079 ORTHO05D003781 5.5e-25 118.2 132 47.0
BcaB05g22580 Brassica carinata HOM05D000079 ORTHO05D003781 4.6e-24 115.2 132 43.9
Aa31LG7G13360 Aethionema arabicum HOM05D000079 ORTHO05D003781 2.3e-23 112.8 133 42.1
BolC8t51557H Brassica oleracea HOM05D000079 ORTHO05D003781 3.9e-23 112.1 125 46.4
Aa31LG7G13390 Aethionema arabicum HOM05D000079 ORTHO05D003781 1.5e-22 110.2 132 43.2
C08p39850 Brassica napus HOM05D000079 ORTHO05D003781 3.3e-22 109.0 125 45.6
BcaB04g18170 Brassica carinata HOM05D000079 ORTHO05D003781 5.7e-22 108.2 132 45.5
THA.LOC104814920 Tarenaya hassleriana HOM05D000079 ORTHO05D003781 3.8e-18 95.5 133 39.1
Aa31LG6G8080 Aethionema arabicum HOM05D000079 ORTHO05D003781 6.1e-16 88.2 144 36.1
Cpa.g.sc2.334 Carica papaya HOM05D000079 ORTHO05D003781 1.0e-15 87.4 132 37.1
Ca_19378_v3 Cicer arietinum L. HOM05D000079 ORTHO05D003781 4.3e-14 82.0 140 33.6
QL01p025685 Quercus lobata HOM05D000079 ORTHO05D003781 1.3e-13 80.5 132 34.1
TPR.G15583 Trifolium pratense HOM05D000079 ORTHO05D003781 1.3e-13 80.5 143 32.2
Aa31LG6G8040 Aethionema arabicum HOM05D000079 ORTHO05D003781 1.6e-13 80.1 144 34.0
CiPaw.13G067200 Carya illinoinensis HOM05D000079 ORTHO05D003781 2.2e-13 79.7 137 35.0
Thecc.09G359900 Theobroma cacao HOM05D000079 ORTHO05D003781 2.8e-13 79.3 132 34.1
Medtr4g055170 Medicago truncatula HOM05D000079 ORTHO05D003781 4.8e-13 78.6 140 31.4
Thhalv10011129m.g Eutrema salsugineum HOM05D000079 ORTHO05D003781 8.2e-13 77.8 139 36.7
Lalb_Chr18g0051471 Lupinus albus HOM05D000079 ORTHO05D003781 8.2e-13 77.8 132 32.6
Sp5g14570 Schrenkiella parvula HOM05D000079 ORTHO05D003781 8.2e-13 77.8 139 37.4
Glyma.13G044100 Glycine max HOM05D000079 ORTHO05D003781 1.4e-12 77.0 137 32.8
BcaC02g08142 Brassica carinata HOM05D000079 ORTHO05D003781 5.3e-12 75.1 139 37.4
BolC4t27317H Brassica oleracea HOM05D000079 ORTHO05D003781 5.3e-12 75.1 139 37.4
Thecc.09G359800 Theobroma cacao HOM05D000079 ORTHO05D003781 5.3e-12 75.1 132 33.3
Glyma.18G056200 Glycine max HOM05D000079 ORTHO05D003781 6.9e-12 74.7 132 30.3
Psat7g190240 Pisum sativum HOM05D000079 ORTHO05D003781 9.0e-12 74.3 140 31.4
Phvul.006G075000 Phaseolus vulgaris HOM05D000079 ORTHO05D003781 1.5e-11 73.6 132 29.5
Atru.chr1.2660 Acer truncatum HOM05D000079 ORTHO05D003781 2.0e-11 73.2 131 33.6
arahy.Tifrunner.gnm1.ann1.URW6ER Arachis hypogaea HOM05D000079 ORTHO05D003781 2.0e-11 73.2 132 31.1
C04p57920 Brassica napus HOM05D000079 ORTHO05D003781 2.0e-11 73.2 139 36.7
CSS0002575 Camellia sinensis var. sinensis HOM05D000079 ORTHO05D003781 2.0e-11 73.2 132 32.6
Manes.18G137800 Manihot esculenta HOM05D000079 ORTHO05D003781 2.0e-11 73.2 132 31.8
Duzib106G0313 Durio zibethinus HOM05D000079 ORTHO05D003781 3.4e-11 72.4 132 31.8
arahy.Tifrunner.gnm1.ann1.SVL2MX Arachis hypogaea HOM05D000079 ORTHO05D003781 4.5e-11 72.0 147 29.9
arahy.Tifrunner.gnm1.ann1.T7C0J5 Arachis hypogaea HOM05D000079 ORTHO05D003781 4.5e-11 72.0 142 31.7
CSS0016065 Camellia sinensis var. sinensis HOM05D000079 ORTHO05D003781 4.5e-11 72.0 132 31.1
VMungo0540G2087 Vigna mungo HOM05D000079 ORTHO05D003781 4.5e-11 72.0 132 29.5
arahy.Tifrunner.gnm1.ann1.P0Y5B8 Arachis hypogaea HOM05D000079 ORTHO05D003781 5.9e-11 71.6 142 31.7
arahy.Tifrunner.gnm1.ann1.Z3GTES Arachis hypogaea HOM05D000079 ORTHO05D003781 5.9e-11 71.6 132 30.3
arahy.Tifrunner.gnm1.ann1.A8RKBJ Arachis hypogaea HOM05D000079 ORTHO05D003781 7.7e-11 71.2 147 29.3
Gohir.A03G024600 Gossypium hirsutum HOM05D000079 ORTHO05D003781 7.7e-11 71.2 132 31.1
Lj2g0015982 Lotus japonicus HOM05D000079 ORTHO05D003781 7.7e-11 71.2 132 31.8
Lj2g0017984 Lotus japonicus HOM05D000079 ORTHO05D003781 7.7e-11 71.2 132 31.8
Lj6g0010483 Lotus japonicus HOM05D000079 ORTHO05D003781 7.7e-11 71.2 132 31.8
Sabra19G0124200 Salix brachista HOM05D000079 ORTHO05D003781 7.7e-11 71.2 136 31.6
Sabra19G0130400 Salix brachista HOM05D000079 ORTHO05D003781 7.7e-11 71.2 136 31.6
Aqoxy2G00757 Aquilegia oxysepala HOM05D000079 ORTHO05D003781 1.0e-10 70.9 132 32.6
COL.COLO4_11177 Corchorus olitorius HOM05D000079 ORTHO05D003781 1.0e-10 70.9 132 31.1
Lalb_Chr18g0051511 Lupinus albus HOM05D000079 ORTHO05D003781 1.0e-10 70.9 134 32.8
Glyma.08G071501 Glycine max HOM05D000079 ORTHO05D003781 1.3e-10 70.5 137 32.1
Gohir.D03G143900 Gossypium hirsutum HOM05D000079 ORTHO05D003781 1.7e-10 70.1 132 31.1
Gorai.003G151200 Gossypium raimondii HOM05D000079 ORTHO05D003781 1.7e-10 70.1 132 31.1
Cc01_g15020 Coffea canephora HOM05D000079 ORTHO05D003781 2.2e-10 69.7 132 30.3
DCAR_018791 Daucus carota HOM05D000079 ORTHO05D003781 2.2e-10 69.7 135 34.1
AT5G07080 Arabidopsis thaliana HOM05D000079 ORTHO05D003781 3.8e-10 68.9 141 34.0
VMungo0540G0378 Vigna mungo HOM05D000079 ORTHO05D003781 5.0e-10 68.6 134 33.6
Aa31LG4G16060 Aethionema arabicum HOM05D000079 ORTHO05D003781 6.5e-10 68.2 138 34.8
AT3G47170 Arabidopsis thaliana HOM05D000079 ORTHO05D003781 8.5e-10 67.8 141 38.3
Lj6g0021206 Lotus japonicus HOM05D000079 ORTHO05D003781 8.5e-10 67.8 153 32.7
Atru.chr4.464 Acer truncatum HOM05D000079 ORTHO05D003781 1.1e-09 67.4 139 31.7
Lj6g0002661 Lotus japonicus HOM05D000079 ORTHO05D003781 1.1e-09 67.4 153 32.7
Potri.019G126400 Populus trichocarpa HOM05D000079 ORTHO05D003781 1.1e-09 67.4 136 30.1
AL6G17250 Arabidopsis lyrata HOM05D000079 ORTHO05D003781 1.9e-09 66.6 139 34.5
CARHR206060 Cardamine hirsuta HOM05D000079 ORTHO05D003781 1.9e-09 66.6 135 33.3
BcaNung04196 Brassica carinata HOM05D000079 ORTHO05D003781 2.5e-09 66.2 135 32.6
C09p69230 Brassica napus HOM05D000079 ORTHO05D003781 2.5e-09 66.2 135 32.6
BolC9t59667H Brassica oleracea HOM05D000079 ORTHO05D003781 2.5e-09 66.2 135 32.6
Sp5g14590 Schrenkiella parvula HOM05D000079 ORTHO05D003781 2.5e-09 66.2 140 35.0
A10p28880 Brassica napus HOM05D000079 ORTHO05D003781 3.2e-09 65.9 135 32.6
Carub.0006s0600 Capsella rubella HOM05D000079 ORTHO05D003781 3.2e-09 65.9 133 33.8
Thhalv10013522m.g Eutrema salsugineum HOM05D000079 ORTHO05D003781 3.2e-09 65.9 139 32.4
TAR623G0994 Trochodendron aralioides HOM05D000079 ORTHO05D003781 3.2e-09 65.9 136 30.1
arahy.Tifrunner.gnm1.ann1.46PQYR Arachis hypogaea HOM05D000079 ORTHO05D003781 4.2e-09 65.5 135 30.4
arahy.Tifrunner.gnm1.ann1.LKMW4K Arachis hypogaea HOM05D000079 ORTHO05D003781 4.2e-09 65.5 135 30.4
BcaC06g32517 Brassica carinata HOM05D000079 ORTHO05D003781 4.2e-09 65.5 139 33.1
Lalb_Chr20g0108731 Lupinus albus HOM05D000079 ORTHO05D003781 4.2e-09 65.5 133 32.3
CANSAT54G2083 Cannabis sativa HOM05D000079 ORTHO05D003781 5.5e-09 65.1 147 30.6
Sp5g14580 Schrenkiella parvula HOM05D000079 ORTHO05D003781 5.5e-09 65.1 139 34.5
BraA10t44935Z Brassica rapa HOM05D000079 ORTHO05D003781 7.2e-09 64.7 135 31.9
Lj1P125T22 Lonicera japonica HOM05D000079 ORTHO05D003781 9.4e-09 64.3 132 30.3
Medtr6g053810 Medicago truncatula HOM05D000079 ORTHO05D003781 9.4e-09 64.3 148 34.5
AL5G26430 Arabidopsis lyrata HOM05D000079 ORTHO05D003781 4.6e-08 62.0 141 36.2
Sp6g35790 Schrenkiella parvula HOM05D000079 ORTHO05D003781 4.6e-08 62.0 135 30.4
TPR.G24972 Trifolium pratense HOM05D000079 ORTHO05D003781 4.6e-08 62.0 142 31.7
Aa31LG7G13420 Aethionema arabicum HOM05D001487 ORTHO05D001365 6.1e-08 61.6 102 31.4
CANSAT54G0842 Cannabis sativa HOM05D000079 ORTHO05D003781 6.1e-08 61.6 147 32.0
CANSAT54G3010 Cannabis sativa HOM05D000079 ORTHO05D003781 6.1e-08 61.6 147 32.0
CARHR206070 Cardamine hirsuta HOM05D000079 ORTHO05D003781 7.9e-08 61.2 135 29.6
Cpa.g.sc2.333 Carica papaya HOM05D000079 ORTHO05D003781 7.9e-08 61.2 134 29.1
BcaC07g40983 Brassica carinata HOM05D001726 ORTHO05D001761 1.4e-07 60.5 55 50.9
CANSAT54G2249 Cannabis sativa HOM05D000079 ORTHO05D003781 1.4e-07 60.5 147 32.0
Medtr3g465930 Medicago truncatula HOM05D000079 ORTHO05D003781 1.4e-07 60.5 136 30.9
CANSAT54G0656 Cannabis sativa HOM05D000079 ORTHO05D003781 1.8e-07 60.1 147 31.3
CANSAT54G1148 Cannabis sativa HOM05D000079 ORTHO05D003781 1.8e-07 60.1 147 31.3
CANSAT54G1604 Cannabis sativa HOM05D000079 ORTHO05D003781 1.8e-07 60.1 147 32.0
CANSAT54G2162 Cannabis sativa HOM05D000079 ORTHO05D003781 1.8e-07 60.1 147 31.3
CANSAT54G3028 Cannabis sativa HOM05D000079 ORTHO05D003781 1.8e-07 60.1 147 31.3
Thhalv10011145m.g Eutrema salsugineum HOM05D000079 ORTHO05D003781 3.0e-07 59.3 139 30.9
CANSAT54G1107 Cannabis sativa HOM05D000079 ORTHO05D003781 3.9e-07 58.9 147 31.3
arahy.Tifrunner.gnm1.ann1.B1JCFK Arachis hypogaea HOM05D000079 ORTHO05D003781 6.7e-07 58.2 135 28.9
Lj2P1096T15 Lonicera japonica HOM05D000079 ORTHO05D003781 6.7e-07 58.2 133 29.3
Aa31sc43G40 Aethionema arabicum HOM05D000079 ORTHO05D003781 8.8e-07 57.8 136 33.1
Medtr3g465910 Medicago truncatula HOM05D000079 ORTHO05D003781 2.0e-06 56.6 143 30.8
Eucgr.D00550 Eucalyptus grandis HOM05D000079 ORTHO05D009260 4.3e-06 55.5 107 33.6


User provided reference genes

Program Settings