Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 1.0e-99 366.7 184 100.0
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 1.0e-99 366.7 184 100.0
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 4.9e-81 304.7 188 90.4
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 1.5e-77 293.1 186 88.2
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 1.9e-61 239.6 201 69.2
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 1.3e-60 236.9 203 67.5
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 6.2e-60 234.6 203 69.0
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 1.4e-59 233.4 202 69.8
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 1.4e-59 233.4 202 69.8
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 3.4e-58 228.8 198 66.7
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 1.3e-57 226.9 204 66.2
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 1.3e-57 226.9 201 65.2
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 6.4e-57 224.6 205 66.3
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 6.4e-57 224.6 205 66.3
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 8.4e-57 224.2 183 68.3
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 5.4e-56 221.5 193 66.3
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 1.2e-55 220.3 200 65.5
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 6.0e-55 218.0 207 63.3
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 1.3e-54 216.9 183 66.1
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 2.3e-54 216.1 183 66.1
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 4.3e-53 211.8 183 65.0
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 3.6e-52 208.8 193 62.7
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 8.1e-52 207.6 198 61.1
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 9.0e-51 204.1 196 59.2
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.3e-49 200.3 204 59.3
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 3.3e-45 185.7 199 57.3
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 5.1e-38 161.8 199 54.3
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 8.7e-38 161.0 196 48.0
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 2.3e-30 136.3 209 41.1
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 1.1e-29 134.0 163 46.0
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 1.1e-29 134.0 163 46.0
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.5e-29 133.7 175 44.0
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 1.3e-28 130.6 167 44.3
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 1.6e-28 130.2 234 38.0
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 1.6e-28 130.2 203 39.4
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.8e-28 129.4 176 43.2
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 3.7e-28 129.0 202 39.6
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 6.3e-28 128.3 167 43.7
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 1.4e-27 127.1 172 44.2
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.4e-27 126.3 159 44.7
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 4.1e-27 125.6 217 40.1
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 5.3e-27 125.2 170 42.9
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 9.0e-27 124.4 152 45.4
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 2.6e-26 122.9 170 41.2
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 3.4e-26 122.5 161 43.5
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 4.5e-26 122.1 159 43.4
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 7.7e-26 121.3 187 42.2
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.0e-25 120.9 216 35.6
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 1.0e-25 120.9 177 42.4
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.3e-25 120.6 209 40.7
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 2.9e-25 119.4 198 38.4
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 6.5e-25 118.2 208 41.8
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 8.5e-25 117.9 173 43.4
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.1e-24 117.5 213 42.3
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 1.1e-24 117.5 204 38.7
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 1.4e-24 117.1 188 39.4
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 4.2e-24 115.5 160 45.6
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.6e-23 113.6 206 42.7
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 2.1e-23 113.2 184 38.0
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 2.7e-23 112.8 213 36.6
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 4.6e-23 112.1 226 38.5
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 4.6e-23 112.1 219 38.8
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 7.9e-23 111.3 181 37.6
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 1.0e-22 110.9 193 37.3
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 1.0e-22 110.9 221 37.6
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.3e-22 109.8 171 40.9
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.0e-22 109.4 181 38.7
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.7e-22 108.2 171 40.9
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 6.7e-22 108.2 214 36.4
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.5e-21 107.1 170 37.6
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 4.3e-21 105.5 216 35.2
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 4.3e-21 105.5 182 41.2
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 5.7e-21 105.1 184 36.4
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 7.4e-21 104.8 169 39.6
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 9.7e-21 104.4 162 40.1
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 1.7e-20 103.6 173 42.8
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 1.7e-20 103.6 224 34.4
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.7e-20 103.6 182 41.2
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.7e-20 103.6 174 40.2
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 2.2e-20 103.2 174 36.8
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 2.2e-20 103.2 86 54.7
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 2.2e-20 103.2 161 39.1
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 2.2e-20 103.2 159 37.7
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 2.2e-20 103.2 193 38.3
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 3.7e-20 102.4 221 34.8
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 4.8e-20 102.1 203 36.0
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 8.2e-20 101.3 189 38.1
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 1.1e-19 100.9 230 34.3
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 1.1e-19 100.9 214 36.9
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 1.1e-19 100.9 224 34.4
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.1e-19 100.9 183 41.0
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 1.4e-19 100.5 104 48.1
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.4e-19 100.5 169 39.1
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.4e-19 100.5 221 37.6
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 2.4e-19 99.8 149 40.9
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 4.1e-19 99.0 154 38.3
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.1e-19 99.0 210 36.7
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 4.1e-19 99.0 144 43.1
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 5.3e-19 98.6 141 39.0
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 6.9e-19 98.2 184 40.8
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 9.1e-19 97.8 226 33.6
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 9.1e-19 97.8 117 46.2
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 1.2e-18 97.4 202 35.1
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 1.2e-18 97.4 171 39.2
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.5e-18 97.1 209 34.4
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 1.5e-18 97.1 88 53.4
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 1.5e-18 97.1 81 55.6
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 2.0e-18 96.7 111 45.9
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 2.0e-18 96.7 174 34.5
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 2.0e-18 96.7 214 30.8
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 3.4e-18 95.9 198 34.8
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 3.4e-18 95.9 176 36.9
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 5.9e-18 95.1 97 50.5
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 5.9e-18 95.1 77 55.8
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 5.9e-18 95.1 74 58.1
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 7.7e-18 94.7 116 43.1
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 7.7e-18 94.7 170 35.9
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.0e-17 94.4 74 58.1
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.0e-17 94.4 74 58.1
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.3e-17 94.0 209 34.9
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 3.8e-17 92.4 174 36.2
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 3.8e-17 92.4 184 37.0
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 5.0e-17 92.0 74 56.8
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 8.5e-17 91.3 76 53.9
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 1.4e-16 90.5 109 47.7
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.6e-15 87.0 119 51.3
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 2.1e-15 86.7 118 42.4
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 2.7e-15 86.3 100 47.0
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 3.6e-15 85.9 72 52.8
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 4.7e-15 85.5 106 41.5
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 4.7e-15 85.5 102 44.1
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 7.9e-15 84.7 110 51.8
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 1.0e-14 84.3 100 48.0
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 1.0e-14 84.3 206 34.5
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 1.0e-14 84.3 86 46.5
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 3.9e-14 82.4 110 50.9
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 3.9e-14 82.4 107 43.9
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 5.1e-14 82.0 180 33.9
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 1.5e-13 80.5 77 50.6
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 2.0e-13 80.1 107 43.0
BolC3t18785H Brassica oleracea HOM05D004801 ORTHO05D004735 4.4e-13 79.0 110 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 2.8e-12 76.3 80 50.0
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 6.3e-12 75.1 187 34.2
BcaC03g17563 Brassica carinata HOM05D000889 ORTHO05D027509 1.1e-11 74.3 80 61.2
A01p19730 Brassica napus HOM05D004801 ORTHO05D005747 1.1e-11 74.3 83 54.2
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 4.1e-11 72.4 162 33.3
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 5.3e-11 72.0 99 49.5
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 5.3e-11 72.0 76 44.7
BolC2t11588H Brassica oleracea HOM05D004801 ORTHO05D005747 1.6e-10 70.5 87 55.2
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.6e-10 70.5 110 37.3
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 5.2e-06 55.5 179 28.5


User provided reference genes

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