Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 4.6e-299 1030.4 503 100.0
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.3e-298 1028.9 503 99.8
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 4.5e-286 987.3 505 96.2
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 7.4e-281 969.9 505 95.0
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 5.3e-263 910.6 503 89.5
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 8.0e-243 843.6 516 82.0
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 1.0e-237 826.6 510 81.8
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 1.0e-237 826.6 510 82.0
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 3.4e-233 811.6 512 80.7
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 2.8e-232 808.5 516 80.0
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.1e-231 806.6 519 78.0
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 2.4e-231 805.4 521 77.5
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 2.0e-230 802.4 511 80.4
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 5.9e-230 800.8 514 79.8
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 5.6e-228 794.3 522 77.0
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 1.5e-220 769.6 519 75.7
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 1.0e-213 746.9 395 94.2
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 7.6e-193 677.6 520 65.6
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 2.5e-188 662.5 527 65.7
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 3.3e-148 529.3 527 51.0
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 2.8e-147 526.2 529 50.5
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 1.4e-143 513.8 516 51.9
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.2e-142 510.8 538 48.7
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 2.7e-142 509.6 555 47.9
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 1.4e-141 507.3 514 51.0
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 3.9e-141 505.8 519 49.7
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 6.7e-141 505.0 516 51.6
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.1e-140 504.2 516 51.4
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.1e-140 504.2 516 51.4
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.3e-139 500.7 551 48.3
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.3e-139 500.7 551 48.3
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 1.3e-139 500.7 528 50.0
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.7e-139 500.4 516 51.2
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 2.2e-139 500.0 539 47.5
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 1.1e-138 497.7 530 47.4
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.8e-138 496.9 515 51.7
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.8e-138 496.9 519 50.1
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 2.4e-138 496.5 519 48.9
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 3.1e-138 496.1 528 49.1
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 3.5e-137 492.7 540 48.0
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 1.0e-136 491.1 523 48.4
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 2.2e-136 490.0 534 48.5
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 3.8e-136 489.2 518 48.1
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 6.5e-136 488.4 517 49.7
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 6.5e-136 488.4 523 48.6
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 1.1e-135 487.6 528 49.1
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 4.2e-135 485.7 530 48.5
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 4.2e-135 485.7 530 47.0
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 7.2e-135 485.0 514 49.6
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 9.4e-135 484.6 526 48.1
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 2.1e-134 483.4 527 47.8
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 2.7e-134 483.0 519 47.8
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 1.4e-133 480.7 541 47.9
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-133 479.6 548 46.7
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 5.2e-133 478.8 536 47.4
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 6.7e-133 478.4 531 48.2
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 4.4e-132 475.7 556 46.2
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 4.4e-132 475.7 524 49.4
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 2.8e-131 473.0 522 46.4
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 2.8e-131 473.0 521 47.6
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 4.8e-131 472.2 523 48.8
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 1.1e-130 471.1 518 48.6
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 4.1e-130 469.2 538 46.1
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.0e-129 466.8 517 48.4
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 3.5e-129 466.1 522 48.7
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 3.8e-128 462.6 509 48.7
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 3.8e-128 462.6 548 45.4
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.6e-126 457.2 525 46.3
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 8.0e-126 454.9 517 46.2
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 1.8e-125 453.8 510 45.7
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 3.0e-125 453.0 543 44.2
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 4.0e-125 452.6 554 44.6
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 1.2e-124 451.1 518 46.7
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.2e-124 451.1 544 44.1
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.2e-124 451.1 519 45.7
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.5e-124 450.7 541 46.0
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.5e-124 450.7 517 46.8
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 3.4e-124 449.5 521 45.3
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 2.2e-123 446.8 530 44.5
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 3.7e-123 446.0 513 45.2
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 3.7e-123 446.0 511 48.1
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 8.3e-123 444.9 525 45.9
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 7.0e-122 441.8 516 45.0
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 9.1e-122 441.4 513 45.4
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 1.2e-121 441.0 525 45.3
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.6e-121 440.7 527 45.7
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 1.7e-120 437.2 506 44.5
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.5e-119 434.1 506 44.9
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.9e-119 433.7 527 43.8
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 4.2e-119 432.6 474 46.8
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.4e-117 427.6 512 47.3
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 6.8e-117 425.2 527 43.8
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.5e-116 424.1 542 43.4
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 1.8e-114 417.2 492 42.7
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 4.1e-114 416.0 495 42.8
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 7.8e-113 411.8 541 42.9
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 2.1e-110 403.7 520 43.5
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 8.9e-109 398.3 563 40.1
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 6.4e-107 392.1 492 44.5
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 1.1e-106 391.3 516 40.3
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.8e-106 390.6 512 44.3
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 7.3e-103 378.6 464 45.5
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.1e-101 374.8 506 42.7
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 1.2e-100 371.3 511 41.3
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 7.5e-100 368.6 468 42.7
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 2.2e-99 367.1 500 38.8
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 7.0e-98 362.1 519 39.7
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 9.2e-98 361.7 527 38.0
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.2e-97 361.3 489 40.1
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 6.0e-97 359.0 518 39.8
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 6.2e-94 349.0 553 39.1
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 2.3e-93 347.1 492 38.0
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 2.3e-93 347.1 515 37.7
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 2.0e-92 344.0 539 39.3
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 8.3e-91 338.6 500 37.6
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.7e-86 322.8 484 37.6
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.8e-85 320.9 507 37.1
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.1e-82 311.6 526 36.1
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 2.3e-80 303.9 454 37.2
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 9.6e-79 298.5 571 34.7
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.8e-73 278.9 497 33.2
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-71 275.0 512 34.4
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-70 270.8 497 32.4
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.9e-68 261.9 457 33.5
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.9e-67 259.6 457 33.3
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-54 218.4 451 31.0
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-54 218.4 451 31.0
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 3.8e-51 206.8 512 28.3
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 3.7e-46 190.3 265 40.0
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.4e-44 183.7 526 27.8
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.5e-43 179.1 374 31.6
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.9e-42 177.9 520 28.3
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.9e-40 170.2 526 25.9
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.8e-37 161.4 454 27.1
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 9.1e-37 159.1 307 32.9
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 4.5e-36 156.8 172 45.9
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 5.9e-36 156.4 159 49.7
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 3.9e-32 143.7 144 46.5
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.9e-32 143.7 403 26.8
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 9.7e-31 139.0 435 24.1
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 1.1e-26 125.6 480 24.8
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 2.8e-22 110.9 495 24.6
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 5.0e-19 100.1 379 25.6
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.9e-18 98.2 79 51.9
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 2.5e-18 97.8 440 21.6
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.7e-14 84.0 289 28.0
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 9.1e-13 79.3 92 38.0
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.7e-11 75.1 121 31.4
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.5e-10 72.0 69 44.9
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 5.5e-10 70.1 85 38.8
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 5.5e-10 70.1 73 41.1
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.2e-09 68.9 59 52.5
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.7e-09 67.8 87 44.8
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 4.0e-08 63.9 63 39.7
BcaC07g38319 Brassica carinata HOM05D001805 ORTHO05D001734 1.2e-07 62.4 38 73.7
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 1.2e-07 62.4 207 25.6
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 1.5e-07 62.0 207 25.6


User provided reference genes

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