Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 1.5e-43 179.1 90 100.0
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 5.0e-39 164.1 90 94.4
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 5.0e-39 164.1 90 94.4
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 1.4e-36 156.0 92 89.1
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 7.5e-35 150.2 90 86.7
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 6.4e-34 147.1 90 84.4
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 2.7e-32 141.7 90 81.1
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 6.0e-32 140.6 90 78.9
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 7.8e-32 140.2 90 78.9
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 1.7e-31 139.0 90 78.9
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 1.7e-31 139.0 90 78.9
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 5.1e-31 137.5 90 78.9
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 5.1e-31 137.5 90 78.9
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 2.5e-30 135.2 90 75.6
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 2.1e-29 132.1 90 75.6
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 6.2e-29 130.6 90 76.7
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 6.2e-29 130.6 90 76.7
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 6.2e-29 130.6 90 76.7
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 6.2e-29 130.6 90 76.7
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 6.2e-29 130.6 90 76.7
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 9.9e-27 123.2 90 73.3
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 2.0e-19 99.0 90 60.0
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 2.0e-11 72.4 92 46.7
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 3.4e-11 71.6 95 46.3
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 7.6e-11 70.5 95 45.3
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.3e-10 69.7 102 46.1
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 1.3e-10 69.7 95 45.3
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 1.7e-10 69.3 95 46.3
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 1.7e-10 69.3 95 45.3
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 2.2e-10 68.9 96 45.8
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 4.9e-10 67.8 93 44.1
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 4.9e-10 67.8 103 41.7
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 6.4e-10 67.4 95 44.2
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 6.4e-10 67.4 98 41.8
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 6.4e-10 67.4 95 44.2
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 8.4e-10 67.0 97 45.4
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 8.4e-10 67.0 103 41.7
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 8.4e-10 67.0 98 41.8
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 1.1e-09 66.6 95 43.2
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 1.4e-09 66.2 100 46.0
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 1.9e-09 65.9 90 37.8
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 3.2e-09 65.1 96 45.8
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 3.2e-09 65.1 96 45.8
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 5.4e-09 64.3 95 42.1
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 7.1e-09 63.9 95 38.9
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 9.3e-09 63.5 101 41.6
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 1.2e-08 63.2 99 40.4
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 1.6e-08 62.8 94 41.5
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 1.6e-08 62.8 95 38.9
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 1.6e-08 62.8 102 39.2
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 2.1e-08 62.4 98 45.9
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 2.1e-08 62.4 86 43.0
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 2.1e-08 62.4 100 46.0
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 2.7e-08 62.0 99 40.4
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 2.7e-08 62.0 94 41.5
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 3.5e-08 61.6 98 45.9
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.5e-08 61.6 95 41.1
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 4.6e-08 61.2 98 42.9
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 4.6e-08 61.2 91 39.6
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 6.0e-08 60.8 105 37.1
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 6.0e-08 60.8 111 38.7
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.3e-07 59.7 95 37.9
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.3e-07 59.7 86 41.9
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 1.7e-07 59.3 96 37.5
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 1.7e-07 59.3 95 40.0
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 1.7e-07 59.3 95 40.0
unitig_699.g19386 Utricularia gibba HOM05D004838 ORTHO05D005373 1.7e-07 59.3 93 40.9
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 2.3e-07 58.9 95 40.0
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 2.3e-07 58.9 96 40.6
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 3.0e-07 58.5 96 39.6
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 3.0e-07 58.5 95 41.1
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.9e-07 58.2 98 38.8
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 3.9e-07 58.2 95 41.1
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 3.9e-07 58.2 85 45.9
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 3.9e-07 58.2 100 38.0
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 3.9e-07 58.2 100 38.0
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 5.1e-07 57.8 95 42.1
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 6.6e-07 57.4 95 38.9
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 1.9e-06 55.8 96 41.7
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 2.5e-06 55.5 95 40.0
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 2.5e-06 55.5 94 40.4
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 3.3e-06 55.1 94 39.4
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 4.3e-06 54.7 93 37.6
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 4.3e-06 54.7 91 38.5
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 7.3e-06 53.9 92 39.1
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 7.3e-06 53.9 93 37.6
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 7.3e-06 53.9 96 36.5
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 9.6e-06 53.5 94 38.3


User provided reference genes

Program Settings