Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 3.2e-184 648.3 330 100.0
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 3.2e-184 648.3 330 100.0
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 5.9e-162 574.3 335 89.6
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 6.3e-156 554.3 335 87.2
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.2e-146 523.5 339 81.7
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 4.0e-142 508.4 341 79.8
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 1.2e-141 506.9 341 83.0
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 4.6e-138 495.0 340 79.1
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 6.6e-137 491.1 338 77.8
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 7.3e-136 487.6 343 77.3
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 6.2e-135 484.6 339 78.5
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-134 483.8 338 78.7
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.1e-134 483.8 338 78.4
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 3.1e-134 482.3 338 77.5
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 4.0e-134 481.9 343 76.7
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 2.2e-132 476.1 340 78.2
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 3.7e-132 475.3 339 77.9
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 9.9e-117 424.1 339 69.9
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 8.7e-113 411.0 336 69.0
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.5e-112 409.5 337 68.5
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 4.3e-112 408.7 337 69.4
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 4.8e-111 405.2 335 68.4
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 8.1e-111 404.4 340 67.4
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.6e-109 399.4 344 66.0
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 4.2e-107 392.1 316 69.0
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 5.4e-107 391.7 338 67.5
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 7.1e-107 391.3 338 67.5
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.8e-105 386.7 340 66.2
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.8e-105 386.7 340 66.2
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 2.3e-105 386.3 332 66.9
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 1.6e-103 380.2 340 65.9
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 8.1e-103 377.9 330 65.8
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 6.9e-102 374.8 323 63.5
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.0e-100 370.9 338 63.9
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 4.9e-100 368.6 322 62.7
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 7.1e-99 364.8 323 61.9
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 2.1e-98 363.2 324 61.4
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.7e-98 362.8 323 61.0
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.8e-97 360.1 323 61.0
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 2.3e-97 359.8 323 60.7
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 3.9e-97 359.0 343 59.8
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.1e-96 357.5 323 60.7
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 3.3e-96 355.9 342 59.9
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 4.3e-96 355.5 342 60.2
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 4.3e-96 355.5 323 60.1
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 5.7e-96 355.1 342 61.1
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 5.7e-96 355.1 327 59.9
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 6.2e-95 351.7 348 58.0
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.1e-94 349.4 323 60.7
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 5.3e-94 348.6 325 60.6
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 5.3e-94 348.6 323 60.7
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 1.2e-93 347.4 334 58.4
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 4.5e-93 345.5 324 60.8
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 7.6e-93 344.7 326 61.0
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 1.0e-92 344.4 330 59.7
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.0e-92 342.0 323 60.7
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 8.4e-92 341.3 323 60.1
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 3.2e-91 339.3 343 59.8
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.2e-91 339.3 343 57.7
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 5.5e-91 338.6 324 60.2
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 9.3e-91 337.8 343 56.9
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 9.3e-91 337.8 341 56.6
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.2e-90 337.4 323 59.1
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.1e-90 336.7 343 59.5
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.7e-90 336.3 323 60.1
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 6.1e-90 335.1 341 56.9
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 7.9e-90 334.7 323 60.1
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.8e-89 333.6 323 59.8
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 2.3e-89 333.2 326 58.9
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 3.0e-89 332.8 327 57.5
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 7.4e-88 328.2 325 60.0
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 7.4e-88 328.2 330 57.6
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 9.7e-88 327.8 341 55.4
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.3e-87 327.4 326 58.6
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 2.2e-87 326.6 334 57.2
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 2.8e-87 326.2 333 57.4
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 4.8e-87 325.5 334 57.5
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 1.1e-86 324.3 327 58.4
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 5.3e-86 322.0 345 56.5
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 3.4e-85 319.3 326 58.9
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 4.5e-85 318.9 298 59.1
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 4.5e-85 318.9 339 55.5
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 1.0e-84 317.8 329 56.8
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.2e-84 316.6 368 52.4
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 2.9e-84 316.2 340 55.3
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 3.8e-84 315.8 405 49.6
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 6.5e-84 315.1 338 54.7
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 1.4e-83 313.9 326 56.7
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 2.5e-83 313.2 346 56.4
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 5.5e-83 312.0 332 56.3
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 2.7e-82 309.7 325 54.2
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 6.1e-82 308.5 342 55.3
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 6.1e-82 308.5 343 55.1
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 7.9e-82 308.1 394 49.5
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 1.4e-81 307.4 345 56.5
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.8e-81 307.0 342 54.1
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 2.3e-81 306.6 341 55.1
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 5.1e-81 305.4 324 56.8
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 5.1e-81 305.4 327 55.7
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 6.7e-81 305.1 323 53.3
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 6.7e-81 305.1 328 56.1
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 5.7e-80 302.0 324 56.5
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 7.4e-80 301.6 344 53.5
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 9.7e-80 301.2 325 56.3
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.3e-79 300.8 354 54.0
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 8.2e-79 298.1 344 54.7
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 4.1e-78 295.8 317 55.2
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 4.1e-78 295.8 326 55.2
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 6.9e-78 295.0 325 54.8
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 9.1e-78 294.7 373 50.1
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 1.2e-77 294.3 324 54.9
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 2.0e-77 293.5 343 53.4
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 2.6e-77 293.1 319 56.7
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 5.9e-77 292.0 337 54.6
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 5.9e-77 292.0 326 54.6
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 1.0e-76 291.2 329 52.6
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 2.2e-76 290.0 344 52.3
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.9e-76 289.7 200 80.0
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 5.0e-76 288.9 344 52.0
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 6.5e-76 288.5 326 53.4
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 1.9e-75 287.0 343 51.6
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 5.5e-75 285.4 323 52.0
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 4.7e-74 282.3 345 51.0
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 6.1e-74 282.0 324 53.1
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 6.1e-74 282.0 339 51.3
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 1.0e-73 281.2 260 58.5
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 2.6e-72 276.6 294 56.5
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 4.4e-72 275.8 335 51.3
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 7.4e-72 275.0 274 59.5
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 8.2e-71 271.6 243 61.3
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 1.1e-70 271.2 330 53.3
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 3.1e-70 269.6 331 49.5
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 4.1e-70 269.2 342 48.8
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 2.2e-68 263.5 352 46.9
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 5.0e-68 262.3 322 49.4
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.6e-66 257.3 330 48.2
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 2.7e-66 256.5 322 49.4
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 3.0e-65 253.1 329 48.0
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 8.8e-65 251.5 331 48.3
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.1e-64 251.1 321 48.6
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 2.8e-63 246.5 329 47.4
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.6e-61 240.0 329 46.8
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.6e-58 230.7 255 53.7
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.7e-52 210.7 312 48.7
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 1.0e-44 184.9 340 40.3
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 3.8e-44 183.0 239 48.5
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 3.3e-27 126.7 398 30.7
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.2e-26 124.8 253 36.4
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.8e-25 120.9 146 50.7
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 3.4e-24 116.7 327 30.9
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.2e-18 98.2 159 42.1
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 9.9e-16 88.6 89 52.8
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.7e-12 77.8 144 40.3
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 3.1e-09 67.0 65 55.4
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 4.4e-08 63.2 42 78.6
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 2.4e-06 57.4 347 25.4
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 4.2e-06 56.6 153 33.3
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 7.1e-06 55.8 209 26.3


User provided reference genes

Program Settings