Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p56510 Brassica napus HOM05D000939 ORTHO05D000745 3.7e-47 191.0 87 100.0
A01p31330 Brassica napus HOM05D000939 ORTHO05D000745 4.9e-15 84.3 41 100.0
A06p16650 Brassica napus HOM05D000939 ORTHO05D000745 4.9e-15 84.3 41 100.0
BraA01t03258Z Brassica rapa HOM05D000939 ORTHO05D000745 4.9e-15 84.3 41 100.0
BraA06t24772Z Brassica rapa HOM05D000939 ORTHO05D000745 4.9e-15 84.3 41 100.0
BcaB04g17560 Brassica carinata HOM05D000939 ORTHO05D000745 1.0e-12 76.6 41 92.7
BcaB07g33868 Brassica carinata HOM05D000939 ORTHO05D000745 1.3e-12 76.3 41 92.7
A10p06770 Brassica napus HOM05D000939 ORTHO05D000745 1.3e-12 76.3 41 92.7
BraA10t42937Z Brassica rapa HOM05D000939 ORTHO05D000745 1.3e-12 76.3 41 92.7
BolC4t23537H Brassica oleracea HOM05D000939 ORTHO05D000745 3.0e-12 75.1 41 90.2
BraA07t28250Z Brassica rapa HOM05D000939 ORTHO05D000745 3.9e-12 74.7 39 92.3
BcaC07g37256 Brassica carinata HOM05D000939 ORTHO05D000745 5.1e-12 74.3 41 90.2
A08p06080 Brassica napus HOM05D000939 ORTHO05D000745 5.1e-12 74.3 41 90.2
C08p06860 Brassica napus HOM05D000939 ORTHO05D000745 5.1e-12 74.3 41 90.2
BolC8t47528H Brassica oleracea HOM05D000939 ORTHO05D000745 5.1e-12 74.3 41 90.2
BraA08t32608Z Brassica rapa HOM05D000939 ORTHO05D000745 5.1e-12 74.3 41 90.2
Sp1g34160 Schrenkiella parvula HOM05D000939 ORTHO05D000745 5.1e-12 74.3 41 87.8
BcaC08g42915 Brassica carinata HOM05D000939 ORTHO05D000745 8.7e-12 73.6 41 90.2
C06p01540 Brassica napus HOM05D000939 ORTHO05D000745 1.9e-11 72.4 41 87.8
BolC6t35283H Brassica oleracea HOM05D000939 ORTHO05D000745 1.9e-11 72.4 41 87.8
BolC7t44004H Brassica oleracea HOM05D000939 ORTHO05D000745 5.6e-11 70.9 37 91.9
Carub.0001s3577 Capsella rubella HOM05D000939 ORTHO05D000745 5.6e-11 70.9 41 85.4
CARHR036510 Cardamine hirsuta HOM05D000939 ORTHO05D000745 5.6e-11 70.9 41 85.4
Aa31LG9G12920 Aethionema arabicum HOM05D000939 ORTHO05D000745 7.3e-11 70.5 41 80.5
Thhalv10011627m.g Eutrema salsugineum HOM05D000939 ORTHO05D000745 9.6e-11 70.1 41 82.9
Aa31sc1464G10 Aethionema arabicum HOM05D000939 ORTHO05D000745 1.6e-10 69.3 41 80.5
AL1G53110 Arabidopsis lyrata HOM05D000939 ORTHO05D000745 1.6e-10 69.3 41 82.9
AT1G45688 Arabidopsis thaliana HOM05D000939 ORTHO05D000745 1.6e-10 69.3 41 82.9
C07p34730 Brassica napus HOM05D000939 ORTHO05D000745 3.1e-09 65.1 38 86.8
Gohir.D05G206800 Gossypium hirsutum HOM05D000939 ORTHO05D000745 5.3e-09 64.3 41 70.7
Gorai.009G213300 Gossypium raimondii HOM05D000939 ORTHO05D000745 5.3e-09 64.3 41 70.7
Gohir.A05G203700 Gossypium hirsutum HOM05D000939 ORTHO05D000745 1.2e-08 63.2 41 70.7
Gohir.D02G091000 Gossypium hirsutum HOM05D000939 ORTHO05D000745 1.2e-08 63.2 41 73.2
Atru.chr13.716 Acer truncatum HOM05D000939 ORTHO05D000745 1.5e-08 62.8 41 70.7
MSTRG.1355 Avicennia marina HOM05D000939 ORTHO05D000745 1.5e-08 62.8 41 70.7
Duzib116G0133 Durio zibethinus HOM05D000939 ORTHO05D000745 1.5e-08 62.8 41 70.7
Gohir.A03G076300 Gossypium hirsutum HOM05D000939 ORTHO05D000745 1.5e-08 62.8 41 73.2
Gorai.005G101900 Gossypium raimondii HOM05D000939 ORTHO05D000745 1.5e-08 62.8 41 70.7
QL02p004444 Quercus lobata HOM05D000939 ORTHO05D000745 2.6e-08 62.0 41 73.2
THA.LOC104802214 Tarenaya hassleriana HOM05D000939 ORTHO05D000745 2.6e-08 62.0 41 70.7
THA.LOC104814169 Tarenaya hassleriana HOM05D000939 ORTHO05D000745 2.6e-08 62.0 41 70.7
GSVIVG01009475001 Vitis vinifera HOM05D000939 ORTHO05D000745 2.6e-08 62.0 41 70.7
Thecc.08G004600 Theobroma cacao HOM05D000939 ORTHO05D000745 4.4e-08 61.2 41 68.3
COL.COLO4_26534 Corchorus olitorius HOM05D000939 ORTHO05D000745 7.6e-08 60.5 41 70.7
Haze_18032 Corylus avellana HOM05D000939 ORTHO05D000745 7.6e-08 60.5 41 68.3
Potri.002G124600 Populus trichocarpa HOM05D000939 ORTHO05D000745 7.6e-08 60.5 41 70.7
Potri.014G026800 Populus trichocarpa HOM05D000939 ORTHO05D000745 7.6e-08 60.5 41 70.7
Sabra14G0018300 Salix brachista HOM05D000939 ORTHO05D000745 7.6e-08 60.5 41 70.7
Duzib041G0442 Durio zibethinus HOM05D000939 ORTHO05D000745 9.9e-08 60.1 41 65.9
Lj4A770T65 Lonicera japonica HOM05D000939 ORTHO05D000745 9.9e-08 60.1 41 70.7
Manes.18G038901 Manihot esculenta HOM05D000939 ORTHO05D000745 9.9e-08 60.1 41 65.9
CARHR181280 Cardamine hirsuta HOM05D000939 ORTHO05D000745 1.3e-07 59.7 42 73.8
Sabra02G0097800 Salix brachista HOM05D000939 ORTHO05D000745 1.3e-07 59.7 41 68.3
CiPaw.15G054900 Carya illinoinensis HOM05D000939 ORTHO05D000745 1.7e-07 59.3 41 70.7
PGR083G2614 Punica granatum HOM05D000939 ORTHO05D000745 1.7e-07 59.3 41 65.9
CSS0021830 Camellia sinensis var. sinensis HOM05D000939 ORTHO05D000745 2.2e-07 58.9 40 67.5
Cfa018080 Carpinus fangiana HOM05D000939 ORTHO05D000745 2.2e-07 58.9 41 68.3
FvH4_2g34240 Fragaria vesca HOM05D000939 ORTHO05D000745 2.2e-07 58.9 41 65.9
FAN15G1814 Fragaria x ananassa HOM05D000939 ORTHO05D000745 2.2e-07 58.9 41 65.9
FAN24G1977 Fragaria x ananassa HOM05D000939 ORTHO05D000745 2.2e-07 58.9 41 65.9
BcaB07g31040 Brassica carinata HOM05D000939 ORTHO05D000745 2.9e-07 58.5 42 71.4
Ciclev10001851m.g Citrus clementina HOM05D000939 ORTHO05D000745 2.9e-07 58.5 41 68.3
TWI56G0664 Tripterygium wilfordii HOM05D000939 ORTHO05D000745 2.9e-07 58.5 41 68.3
Gohir.A06G019600 Gossypium hirsutum HOM05D000939 ORTHO05D000745 3.8e-07 58.2 41 63.4
Gohir.D06G018000 Gossypium hirsutum HOM05D000939 ORTHO05D000745 3.8e-07 58.2 41 63.4
Gorai.010G020900 Gossypium raimondii HOM05D000939 ORTHO05D000745 3.8e-07 58.2 41 63.4
AT5G42860 Arabidopsis thaliana HOM05D000939 ORTHO05D000745 4.9e-07 57.8 42 71.4
CDE08G1466 Ceratophyllum demersum HOM05D000939 ORTHO05D000745 4.9e-07 57.8 41 63.4
Dinv39302 Davidia involucrata HOM05D000939 ORTHO05D000745 4.9e-07 57.8 41 65.9
Manes.05G175200 Manihot esculenta HOM05D000939 ORTHO05D000745 4.9e-07 57.8 41 63.4
RcHm_v2.0_Chr6g0308181 Rosa chinensis HOM05D000939 ORTHO05D000745 4.9e-07 57.8 41 65.9
MELO3C010846.2 Cucumis melo HOM05D000939 ORTHO05D000745 6.4e-07 57.4 41 63.4
Sc15g0006020 Simmondsia chinensis HOM05D000939 ORTHO05D000745 6.4e-07 57.4 41 63.4
AL8G18090 Arabidopsis lyrata HOM05D000939 ORTHO05D000745 8.4e-07 57.0 42 71.4
CANSAT25G2585 Cannabis sativa HOM05D000939 ORTHO05D000745 8.4e-07 57.0 41 63.4
DCAR_012783 Daucus carota HOM05D000939 ORTHO05D000745 8.4e-07 57.0 41 65.9
THA.LOC104812578 Tarenaya hassleriana HOM05D000939 ORTHO05D000745 1.1e-06 56.6 41 65.9
PSO170G2516 Papaver somniferum HOM05D000939 ORTHO05D000745 1.4e-06 56.2 41 63.4
PSO210G7754 Papaver somniferum HOM05D000939 ORTHO05D000745 1.4e-06 56.2 41 63.4
Peaxi162Scf00503g00112 Petunia axillaris HOM05D000939 ORTHO05D000745 1.4e-06 56.2 41 68.3
Sp2g07560 Schrenkiella parvula HOM05D000939 ORTHO05D000745 1.4e-06 56.2 42 71.4
Hund24041 Selenicereus undatus HOM05D000939 ORTHO05D000745 1.4e-06 56.2 41 65.9
Carub.0008s0606 Capsella rubella HOM05D000939 ORTHO05D000745 1.9e-06 55.8 42 69.0
Oeu057276.1 Olea europaea HOM05D000939 ORTHO05D000745 1.9e-06 55.8 41 61.0
Cc07_g06090 Coffea canephora HOM05D000939 ORTHO05D000745 2.4e-06 55.5 40 70.0
Cc10_g04560 Coffea canephora HOM05D000939 ORTHO05D000745 2.4e-06 55.5 41 65.9
Phvul.002G326000 Phaseolus vulgaris HOM05D000939 ORTHO05D000745 2.4e-06 55.5 41 63.4
Sopen04g032350 Solanum pennellii HOM05D000939 ORTHO05D000745 2.4e-06 55.5 41 63.4
PGSC0003DMG400007960 Solanum tuberosum HOM05D000939 ORTHO05D000745 2.4e-06 55.5 41 63.4
VMungo0251G2920 Vigna mungo HOM05D000939 ORTHO05D000745 2.4e-06 55.5 41 63.4
BcaC04g21966 Brassica carinata HOM05D000939 ORTHO05D000745 3.2e-06 55.1 41 68.3
A09p20020 Brassica napus HOM05D000939 ORTHO05D000745 3.2e-06 55.1 41 68.3
C09p25400 Brassica napus HOM05D000939 ORTHO05D000745 3.2e-06 55.1 41 68.3
BolC9t55439H Brassica oleracea HOM05D000939 ORTHO05D000745 3.2e-06 55.1 41 68.3
BraA09t37611Z Brassica rapa HOM05D000939 ORTHO05D000745 3.2e-06 55.1 41 68.3
CAN.G370.52 Capsicum annuum HOM05D000939 ORTHO05D000745 3.2e-06 55.1 40 67.5
CDE02G0648 Ceratophyllum demersum HOM05D000939 ORTHO05D000745 3.2e-06 55.1 41 61.0
Dinv29995 Davidia involucrata HOM05D000939 ORTHO05D000745 3.2e-06 55.1 41 68.3
Migut.K00769 Erythranthe guttata HOM05D000939 ORTHO05D000745 3.2e-06 55.1 40 67.5
Solyc02g091000.4 Solanum lycopersicum HOM05D000939 ORTHO05D000745 3.2e-06 55.1 40 67.5
Solyc04g078750.3 Solanum lycopersicum HOM05D000939 ORTHO05D000745 3.2e-06 55.1 41 61.0
Sopen02g035650 Solanum pennellii HOM05D000939 ORTHO05D000745 3.2e-06 55.1 40 67.5
Cpa.g.sc49.34 Carica papaya HOM05D000939 ORTHO05D000745 4.2e-06 54.7 41 61.0
ClCG08G016040 Citrullus lanatus HOM05D000939 ORTHO05D000745 4.2e-06 54.7 41 61.0
CsaV3_2G026590 Cucumis sativus L. HOM05D000939 ORTHO05D000745 4.2e-06 54.7 41 61.0
Nitab4.5_0002029g0020 Nicotiana tabacum HOM05D000939 ORTHO05D000745 4.2e-06 54.7 40 67.5
Nitab4.5_0003519g0010 Nicotiana tabacum HOM05D000939 ORTHO05D000745 4.2e-06 54.7 40 67.5
Rhsim10G0116100 Rhododendron simsii HOM05D000939 ORTHO05D000745 4.2e-06 54.7 40 65.0
vmacro04443 Vaccinium macrocarpon HOM05D000939 ORTHO05D000745 5.4e-06 54.3 41 68.3
Psat7g005720 Pisum sativum HOM05D000939 ORTHO05D000745 7.1e-06 53.9 41 63.4
vmacro05304 Vaccinium macrocarpon HOM05D000939 ORTHO05D000745 7.1e-06 53.9 40 62.5
AUR62022488 Chenopodium quinoa HOM05D000939 ORTHO05D000745 9.3e-06 53.5 41 61.0
AUR62036630 Chenopodium quinoa HOM05D000939 ORTHO05D000745 9.3e-06 53.5 41 61.0
MBI16_g18336_MAGBIO Magnolia biondii HOM05D000939 ORTHO05D000745 9.3e-06 53.5 41 58.5
Phvul.004G153000 Phaseolus vulgaris HOM05D000939 ORTHO05D000745 9.3e-06 53.5 41 63.4


User provided reference genes

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