Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 2.7e-42 174.9 86 100.0
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 6.1e-42 173.7 86 98.8
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 2.2e-31 138.7 74 94.6
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.8e-30 135.6 73 93.2
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 2.2e-28 128.6 70 90.0
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 2.2e-28 128.6 70 87.1
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 3.2e-27 124.8 70 87.1
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 5.5e-27 124.0 71 88.7
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 9.4e-27 123.2 71 88.7
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-26 122.9 71 87.3
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.2e-26 122.9 70 85.7
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 2.3e-25 118.6 72 87.5
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 2.3e-25 118.6 72 87.5
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.7e-23 112.5 71 78.9
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.1e-22 108.2 72 79.2
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.0e-20 103.2 72 70.8
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.2e-20 102.1 73 75.3
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 5.5e-19 97.4 70 70.0
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 6.1e-18 94.0 79 63.3
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.8e-15 85.1 86 53.5
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 8.3e-15 83.6 82 54.9
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 1.1e-14 83.2 73 58.9
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.4e-14 82.8 73 57.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.4e-14 82.8 73 57.5
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 5.4e-14 80.9 70 60.0
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 7.0e-14 80.5 73 57.5
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 7.0e-14 80.5 79 51.9
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 7.0e-14 80.5 69 60.9
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 7.0e-14 80.5 70 55.7
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.2e-13 79.7 70 55.7
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.2e-13 79.7 71 56.3
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 4.5e-13 77.8 70 60.0
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 4.5e-13 77.8 69 58.0
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 5.9e-13 77.4 70 61.4
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 5.9e-13 77.4 70 61.4
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 5.9e-13 77.4 70 57.1
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.7e-13 77.0 73 57.5
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.7e-13 77.0 73 57.5
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 1.7e-12 75.9 69 59.4
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 2.9e-12 75.1 78 53.8
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 3.8e-12 74.7 69 55.1
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.8e-12 74.7 81 50.6
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 3.8e-12 74.7 71 56.3
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 8.6e-12 73.6 78 53.8
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.5e-11 72.8 70 55.7
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.5e-11 72.8 71 56.3
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 1.5e-11 72.8 72 56.9
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 2.5e-11 72.0 78 52.6
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 2.5e-11 72.0 74 51.4
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 3.3e-11 71.6 70 54.3
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 3.3e-11 71.6 73 47.9
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.2e-11 71.2 69 52.2
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 4.2e-11 71.2 80 45.0
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 4.2e-11 71.2 70 51.4
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 4.2e-11 71.2 67 53.7
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 4.2e-11 71.2 74 54.1
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 4.2e-11 71.2 69 56.5
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 5.5e-11 70.9 70 54.3
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.2e-11 70.5 79 50.6
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 7.2e-11 70.5 70 55.7
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.2e-11 70.5 86 46.5
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 7.2e-11 70.5 83 47.0
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 9.5e-11 70.1 69 56.5
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.2e-10 69.7 70 55.7
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.2e-10 69.7 85 49.4
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 1.2e-10 69.7 70 52.9
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.2e-10 69.7 74 51.4
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.6e-10 69.3 77 49.4
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.6e-10 69.3 68 54.4
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.6e-10 69.3 69 53.6
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.6e-10 69.3 73 50.7
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.6e-10 69.3 75 49.3
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 1.6e-10 69.3 70 50.0
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 2.1e-10 68.9 76 51.3
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 2.1e-10 68.9 80 50.0
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.1e-10 68.9 74 50.0
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 2.1e-10 68.9 69 53.6
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 2.1e-10 68.9 75 49.3
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.8e-10 68.6 79 49.4
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 2.8e-10 68.6 68 52.9
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.8e-10 68.6 68 52.9
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.8e-10 68.6 71 49.3
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 2.8e-10 68.6 68 52.9
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.6e-10 68.2 79 49.4
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 3.6e-10 68.2 79 49.4
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 3.6e-10 68.2 70 52.9
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 3.6e-10 68.2 78 50.0
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.6e-10 68.2 68 52.9
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 4.7e-10 67.8 65 58.5
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.7e-10 67.8 80 51.2
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 6.1e-10 67.4 70 52.9
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 6.1e-10 67.4 70 54.3
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 6.1e-10 67.4 81 49.4
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 8.0e-10 67.0 70 52.9
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 8.0e-10 67.0 71 47.9
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 8.0e-10 67.0 75 48.0
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 8.0e-10 67.0 78 48.7
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 8.0e-10 67.0 70 52.9
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 1.0e-09 66.6 72 51.4
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 1.0e-09 66.6 66 54.5
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.4e-09 66.2 75 49.3
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 1.4e-09 66.2 70 51.4
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.8e-09 65.9 75 48.0
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.8e-09 65.9 74 54.1
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.3e-09 65.5 70 52.9
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 2.3e-09 65.5 71 53.5
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 2.3e-09 65.5 69 55.1
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 2.3e-09 65.5 76 47.4
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 3.0e-09 65.1 72 51.4
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 3.0e-09 65.1 71 50.7
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.0e-09 64.7 71 49.3
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.0e-09 64.7 77 53.2
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 5.2e-09 64.3 73 50.7
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 5.2e-09 64.3 76 47.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 6.8e-09 63.9 78 48.7
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 6.8e-09 63.9 75 48.0
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 6.8e-09 63.9 69 55.1
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 8.9e-09 63.5 78 50.0
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.9e-09 63.5 76 46.1
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.2e-08 63.2 68 51.5
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.2e-08 63.2 74 50.0
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 1.2e-08 63.2 79 50.6
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.5e-08 62.8 72 48.6
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.5e-08 62.8 72 48.6
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.0e-08 62.4 87 43.7
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.0e-08 62.4 74 50.0
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 2.0e-08 62.4 71 49.3
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.6e-08 62.0 80 48.8
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.4e-08 61.6 80 48.8
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.4e-08 61.6 80 48.8
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 3.4e-08 61.6 74 48.6
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 3.4e-08 61.6 74 50.0
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.7e-08 60.8 88 40.9
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 7.5e-08 60.5 74 47.3
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 9.8e-08 60.1 69 47.8
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 9.8e-08 60.1 77 41.6
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 9.8e-08 60.1 71 50.7
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.7e-07 59.3 82 45.1
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 2.2e-07 58.9 78 48.7
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 2.8e-07 58.5 80 47.5
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 2.8e-07 58.5 80 46.2
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 2.8e-07 58.5 69 49.3
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.7e-07 58.2 76 46.1
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 3.7e-07 58.2 93 39.8
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 4.9e-07 57.8 92 40.2
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 6.3e-07 57.4 78 44.9
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 8.3e-07 57.0 73 47.9
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 8.3e-07 57.0 80 46.2
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 8.3e-07 57.0 80 46.2
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 8.3e-07 57.0 80 46.2
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.4e-06 56.2 77 46.8
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.4e-06 56.2 77 41.6
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 2.4e-06 55.5 71 47.9
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.1e-06 55.1 71 46.5
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 5.4e-06 54.3 71 47.9
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 5.4e-06 54.3 74 41.9
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 5.4e-06 54.3 71 46.5
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 9.2e-06 53.5 71 47.9


User provided reference genes

Program Settings