Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 4.9e-246 854.0 419 100.0
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 2.4e-224 781.9 405 95.6
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 2.1e-220 768.8 384 99.2
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 2.8e-217 758.4 382 98.4
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 1.4e-213 746.1 390 94.9
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 3.1e-208 728.4 378 94.4
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 7.7e-207 723.8 377 93.6
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 1.3e-206 723.0 385 92.5
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 9.4e-205 716.8 377 92.8
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 3.7e-201 704.9 369 93.2
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 3.1e-200 701.8 377 92.3
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 3.1e-200 701.8 378 91.5
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 7.0e-200 700.7 377 90.2
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 4.0e-195 684.9 347 96.5
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 1.5e-194 682.9 347 96.0
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 1.2e-186 656.8 395 84.1
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 8.3e-185 650.6 367 86.9
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 1.6e-183 646.4 407 81.6
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 5.0e-182 641.3 381 81.1
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 1.4e-179 633.3 379 79.7
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 5.2e-179 631.3 381 80.6
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 1.5e-178 629.8 381 79.8
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.0e-178 629.4 342 87.7
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 1.3e-177 626.7 373 81.8
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.7e-177 626.3 378 79.9
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 2.2e-177 625.9 380 81.1
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 3.7e-177 625.2 381 81.1
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 4.9e-177 624.8 377 80.4
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 4.9e-177 624.8 377 80.1
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 8.3e-177 624.0 344 85.5
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 4.1e-176 621.7 353 83.6
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 5.4e-176 621.3 377 79.0
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 7.0e-176 620.9 347 85.6
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.2e-175 620.2 381 78.2
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 2.7e-175 619.0 398 74.1
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 5.9e-175 617.8 352 83.5
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 1.0e-174 617.1 374 77.5
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.0e-174 617.1 343 84.8
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 1.0e-174 617.1 381 78.5
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.7e-174 616.3 378 79.1
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 5.0e-174 614.8 378 77.8
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 1.1e-173 613.6 397 77.3
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 1.9e-173 612.8 344 84.3
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 1.9e-173 612.8 344 84.9
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 2.5e-173 612.5 427 70.3
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 2.5e-173 612.5 344 84.6
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 3.3e-173 612.1 346 83.5
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 3.3e-173 612.1 343 83.7
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 4.3e-173 611.7 381 77.4
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 5.6e-173 611.3 381 77.7
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 9.5e-173 610.5 343 84.0
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 2.1e-172 609.4 388 75.5
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 4.7e-172 608.2 380 78.2
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 4.7e-172 608.2 380 78.2
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 4.7e-172 608.2 387 75.2
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 6.1e-172 607.8 344 82.6
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 1.4e-171 606.7 347 81.6
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 2.0e-170 602.8 388 75.8
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 2.6e-170 602.4 342 82.2
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 9.8e-170 600.5 343 81.3
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 2.2e-169 599.4 383 74.9
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 6.4e-169 597.8 378 74.9
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 1.1e-168 597.0 342 81.6
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 1.1e-168 597.0 342 81.6
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 1.1e-168 597.0 373 76.7
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 1.8e-168 596.3 347 80.4
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 4.1e-168 595.1 342 80.7
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 4.1e-168 595.1 344 80.8
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 5.4e-168 594.7 343 81.0
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 5.4e-168 594.7 342 81.0
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 9.2e-168 594.0 342 81.6
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 1.2e-167 593.6 351 78.9
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 5.9e-167 591.3 389 73.0
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 5.9e-167 591.3 377 74.3
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 5.9e-167 591.3 344 80.5
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 7.8e-167 590.9 344 80.8
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 7.8e-167 590.9 357 80.1
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 7.8e-167 590.9 378 74.1
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 1.0e-166 590.5 373 75.9
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 1.3e-166 590.1 345 79.7
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 1.7e-166 589.7 382 73.0
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 3.9e-166 588.6 342 80.7
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 3.9e-166 588.6 351 80.1
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 5.0e-166 588.2 347 79.3
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 6.6e-166 587.8 344 80.2
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 1.9e-165 586.3 345 80.0
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 3.3e-165 585.5 343 78.4
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 1.6e-164 583.2 352 77.0
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 2.8e-164 582.4 344 80.2
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.4e-163 580.1 345 81.2
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 6.8e-163 577.8 344 80.2
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.2e-162 577.0 394 71.3
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 1.5e-162 576.6 371 73.9
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 2.0e-162 576.2 359 78.3
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 2.6e-162 575.9 390 73.3
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 9.8e-162 573.9 395 71.9
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 1.7e-161 573.2 352 79.0
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 4.1e-160 568.5 344 77.0
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 2.0e-159 566.2 344 77.9
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 1.4e-155 553.5 441 63.3
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 2.9e-153 545.8 480 58.8
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 1.7e-150 536.6 341 73.6
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 2.1e-148 529.6 354 73.4
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 8.9e-147 524.2 305 81.0
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 5.8e-146 521.5 339 72.0
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 6.4e-145 518.1 341 72.1
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 4.6e-143 511.9 339 72.9
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 3.0e-142 509.2 355 70.7
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 4.6e-135 485.3 276 85.1
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 2.5e-133 479.6 329 68.4
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 4.9e-129 465.3 378 63.0
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 1.9e-128 463.4 236 94.9
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 7.4e-125 451.4 258 82.2
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.3e-124 450.7 256 82.4
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 1.3e-121 440.7 339 63.1
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 2.1e-116 423.3 393 58.3
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 7.6e-114 414.8 312 65.7
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 7.6e-114 414.8 312 66.0
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 3.5e-111 406.0 228 85.1
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 4.3e-109 399.1 340 56.2
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 8.5e-105 384.8 355 57.2
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 6.1e-103 378.6 245 72.7
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.7e-101 372.1 354 56.2
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 2.4e-99 366.7 349 52.7
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 4.5e-98 362.5 358 52.0
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 7.9e-95 351.7 254 69.3
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 6.7e-94 348.6 223 77.6
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 4.7e-87 325.9 193 79.8
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 3.3e-77 293.1 219 68.0
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 1.3e-76 291.2 173 79.2
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 2.6e-61 240.4 157 72.0
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 2.4e-59 233.8 174 67.8
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 3.3e-48 196.8 344 37.5
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 4.3e-48 196.4 115 76.5
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 7.3e-48 195.7 114 78.9
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 1.2e-42 178.3 94 87.2
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.1e-40 171.8 276 42.4
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.2e-39 168.3 99 80.8
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 1.9e-35 154.5 357 32.5
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 1.2e-29 135.2 255 39.2
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 1.3e-25 121.7 81 75.3
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.2e-22 109.8 171 41.5
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.9e-20 104.0 95 55.8
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 9.3e-19 99.0 87 55.2
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 5.8e-13 79.7 45 82.2
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.3e-09 68.6 47 68.1


User provided reference genes

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