Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 4.9e-87 324.3 152 100.0
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 4.2e-38 161.8 79 93.7
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 2.4e-33 146.0 117 65.0
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 3.1e-33 145.6 117 64.1
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 1.6e-32 143.3 117 65.0
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.6e-32 143.3 117 64.1
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 2.0e-32 142.9 117 63.2
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 2.0e-32 142.9 117 66.7
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 3.5e-32 142.1 117 63.2
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 4.5e-32 141.7 117 65.0
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 4.5e-32 141.7 117 65.8
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 2.9e-31 139.0 116 62.9
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 8.0e-29 131.0 122 57.4
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 5.2e-28 128.3 117 58.1
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 6.8e-28 127.9 107 62.6
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 5.7e-27 124.8 107 60.7
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 1.1e-25 120.6 115 54.8
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 1.4e-25 120.2 115 54.8
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.4e-25 120.2 115 55.7
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 1.4e-25 120.2 111 57.7
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 1.8e-25 119.8 115 55.7
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.8e-25 119.8 115 55.7
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 3.1e-25 119.0 112 57.1
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 4.1e-25 118.6 115 57.4
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 4.1e-25 118.6 115 57.4
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 5.4e-25 118.2 113 56.6
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 5.4e-25 118.2 112 58.0
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 7.0e-25 117.9 112 57.1
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 7.0e-25 117.9 110 58.2
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 7.0e-25 117.9 110 58.2
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 9.1e-25 117.5 112 56.2
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 1.2e-24 117.1 112 58.0
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 1.2e-24 117.1 111 57.7
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 1.2e-24 117.1 114 54.4
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 1.6e-24 116.7 115 56.5
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 1.6e-24 116.7 113 57.5
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 1.6e-24 116.7 115 56.5
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 2.0e-24 116.3 115 56.5
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 3.5e-24 115.5 114 54.4
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 3.5e-24 115.5 111 55.9
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 3.5e-24 115.5 115 53.0
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 4.5e-24 115.2 111 55.9
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 5.9e-24 114.8 112 56.2
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.0e-23 114.0 113 54.0
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.0e-23 114.0 113 54.0
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 1.0e-23 114.0 114 55.3
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 1.0e-23 114.0 114 55.3
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 1.0e-23 114.0 116 52.6
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 1.3e-23 113.6 119 56.3
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.3e-23 113.6 110 55.5
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 1.3e-23 113.6 111 55.0
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.3e-23 113.6 123 50.4
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 1.7e-23 113.2 110 54.5
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 2.2e-23 112.8 115 53.9
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 2.2e-23 112.8 114 52.6
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 2.9e-23 112.5 115 53.9
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 2.9e-23 112.5 115 52.2
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.9e-23 112.5 114 55.3
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 2.9e-23 112.5 114 52.6
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 2.9e-23 112.5 114 52.6
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 2.9e-23 112.5 115 53.0
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 2.9e-23 112.5 115 51.3
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 2.9e-23 112.5 115 51.3
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 2.9e-23 112.5 115 53.9
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.9e-23 112.5 115 52.2
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 3.8e-23 112.1 114 52.6
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 3.8e-23 112.1 115 51.3
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 3.8e-23 112.1 112 54.5
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 6.5e-23 111.3 114 51.8
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 6.5e-23 111.3 112 50.9
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 8.5e-23 110.9 115 53.0
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 1.1e-22 110.5 114 54.4
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 1.1e-22 110.5 134 47.8
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 1.1e-22 110.5 112 51.8
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 1.1e-22 110.5 113 52.2
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 1.5e-22 110.2 115 53.0
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 1.5e-22 110.2 118 50.8
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 1.9e-22 109.8 115 52.2
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 4.2e-22 108.6 115 51.3
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 5.5e-22 108.2 111 52.3
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 7.2e-22 107.8 116 51.7
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 9.5e-22 107.5 122 48.4
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.2e-21 107.1 113 52.2
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.2e-21 107.1 112 50.0
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 1.6e-21 106.7 134 47.0
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 2.1e-21 106.3 114 50.9
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 3.6e-21 105.5 115 51.3
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 6.1e-21 104.8 115 52.2
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 1.0e-20 104.0 115 49.6
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 1.4e-20 103.6 114 50.0
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 2.3e-20 102.8 110 50.9
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 3.0e-20 102.4 116 50.0
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 4.0e-20 102.1 70 68.6
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 6.8e-20 101.3 107 51.4
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.5e-19 100.1 114 48.2
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 2.6e-19 99.4 89 58.4
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 2.6e-19 99.4 110 50.9
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 4.4e-19 98.6 70 67.1
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 4.4e-19 98.6 111 48.6
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 1.7e-18 96.7 70 67.1
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 1.7e-18 96.7 70 67.1
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 4.9e-18 95.1 108 49.1
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 6.3e-18 94.7 70 65.7
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 8.3e-18 94.4 107 50.5
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.8e-17 93.2 70 65.7
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 2.4e-17 92.8 70 65.7
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 5.4e-17 91.7 107 45.8
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 1.6e-16 90.1 115 44.3
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 2.0e-16 89.7 110 45.5
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 2.0e-16 89.7 111 47.7
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 2.7e-16 89.4 114 45.6
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 4.5e-16 88.6 109 46.8
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.0e-15 87.4 70 61.4
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 2.3e-15 86.3 70 58.6
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 1.8e-12 76.6 66 57.6
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 2.2e-10 69.7 68 55.9
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.2e-10 69.7 87 47.1
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.8e-09 66.6 90 46.7
C07p51700 Brassica napus HOM05D005176 ORTHO05D099902 2.4e-09 66.2 30 96.7
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 7.0e-09 64.7 66 54.5
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 7.0e-09 64.7 79 49.4
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 9.2e-09 64.3 109 39.4
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.6e-08 63.5 85 44.7
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 2.7e-08 62.8 47 63.8
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 3.9e-07 58.9 47 57.4
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 5.0e-07 58.5 68 50.0
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 6.6e-07 58.2 81 44.4
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 6.6e-07 58.2 47 55.3
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 2.5e-06 56.2 55 54.5


User provided reference genes

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