Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 1.0e-99 367.1 238 100.0
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 1.7e-94 349.7 238 95.8
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 1.2e-92 343.6 239 94.1
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 7.0e-88 327.8 239 87.4
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 5.5e-85 318.2 239 90.0
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 6.7e-83 311.2 244 86.5
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 6.7e-83 311.2 244 86.5
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 6.7e-83 311.2 244 86.5
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-79 300.4 244 85.7
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 2.2e-78 296.2 250 84.0
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 1.2e-74 283.9 232 84.9
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 7.0e-72 274.6 246 78.0
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 1.6e-71 273.5 245 79.2
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 2.7e-71 272.7 179 91.1
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 3.5e-71 272.3 239 77.4
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 1.2e-68 263.8 243 74.9
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 1.2e-68 263.8 243 75.7
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 2.0e-63 246.5 244 70.1
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 1.2e-52 210.7 232 62.5
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 6.0e-47 191.8 148 69.6
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 2.5e-45 186.4 178 68.0
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 5.6e-45 185.3 148 64.2
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 9.5e-45 184.5 152 63.2
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 2.8e-44 183.0 133 72.9
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 3.6e-44 182.6 148 64.2
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 3.4e-42 176.0 141 63.8
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 2.9e-41 172.9 190 55.3
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 3.7e-41 172.6 231 47.2
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 6.4e-41 171.8 150 59.3
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 8.3e-41 171.4 140 62.1
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 1.1e-40 171.0 138 63.0
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 1.1e-40 171.0 126 68.3
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 1.1e-40 171.0 157 59.2
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 1.4e-40 170.6 143 62.2
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 1.9e-40 170.2 137 65.0
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 1.9e-40 170.2 141 63.8
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 2.4e-40 169.9 140 67.1
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 5.4e-40 168.7 143 64.3
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 7.1e-40 168.3 149 62.4
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 9.2e-40 167.9 138 60.1
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 9.2e-40 167.9 148 61.5
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 1.2e-39 167.5 140 61.4
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 1.2e-39 167.5 140 61.4
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.2e-39 167.5 144 62.5
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.6e-39 167.2 142 62.0
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 1.6e-39 167.2 148 62.2
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 1.6e-39 167.2 151 61.6
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 1.6e-39 167.2 133 66.2
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 3.5e-39 166.0 195 54.9
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 3.5e-39 166.0 135 63.0
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 4.6e-39 165.6 155 65.2
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 4.6e-39 165.6 155 65.2
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 6.0e-39 165.2 195 54.4
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 6.0e-39 165.2 195 54.9
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 6.0e-39 165.2 195 54.9
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 6.0e-39 165.2 150 58.0
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 7.8e-39 164.9 140 60.7
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 1.0e-38 164.5 193 50.3
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 1.3e-38 164.1 149 59.1
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 1.7e-38 163.7 195 54.4
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 2.3e-38 163.3 142 59.9
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 2.3e-38 163.3 130 64.6
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 3.0e-38 162.9 209 54.5
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 3.9e-38 162.5 182 52.2
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 5.1e-38 162.2 147 60.5
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 8.6e-38 161.4 135 62.2
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 8.6e-38 161.4 143 58.0
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-37 161.0 274 46.4
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 1.1e-37 161.0 274 46.4
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 1.1e-37 161.0 274 46.4
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.1e-37 161.0 133 60.9
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 1.1e-37 161.0 151 57.0
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 1.5e-37 160.6 149 57.7
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.9e-37 160.2 139 59.7
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 1.9e-37 160.2 235 44.7
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 2.5e-37 159.8 151 58.3
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 3.3e-37 159.5 238 43.3
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 4.3e-37 159.1 152 59.2
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 4.3e-37 159.1 152 59.2
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 5.6e-37 158.7 148 58.8
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 9.5e-37 157.9 192 50.0
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.2e-36 157.5 152 58.6
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 2.1e-36 156.8 132 62.9
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.1e-36 156.8 139 60.4
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.1e-36 156.8 152 58.6
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 2.1e-36 156.8 134 63.4
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 2.8e-36 156.4 135 60.0
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 2.8e-36 156.4 139 61.2
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 4.7e-36 155.6 155 62.6
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 4.7e-36 155.6 138 59.4
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 8.1e-36 154.8 151 55.0
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 8.1e-36 154.8 190 48.4
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 1.1e-35 154.5 152 55.3
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.8e-35 153.7 135 59.3
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 4.0e-35 152.5 175 50.9
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 5.2e-35 152.1 155 61.3
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 6.8e-35 151.8 140 55.7
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 8.9e-35 151.4 130 59.2
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 8.9e-35 151.4 148 54.7
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 2.0e-34 150.2 144 57.6
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 2.0e-34 150.2 130 60.0
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 7.6e-34 148.3 250 43.6
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 7.6e-34 148.3 130 58.5
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 7.6e-34 148.3 149 55.7
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 9.9e-34 147.9 135 58.5
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 9.9e-34 147.9 131 61.1
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 1.7e-33 147.1 135 59.3
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 1.7e-33 147.1 147 55.1
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 2.2e-33 146.7 130 60.0
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.2e-33 146.7 148 52.0
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 4.9e-33 145.6 130 56.9
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 8.4e-33 144.8 152 56.6
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.4e-32 144.1 135 58.5
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 7.1e-32 141.7 126 58.7
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 1.6e-31 140.6 135 55.6
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 2.1e-31 140.2 134 58.2
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 3.5e-31 139.4 148 52.0
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 4.6e-31 139.0 138 53.6
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 6.0e-31 138.7 148 52.0
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 7.8e-31 138.3 209 49.8
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 1.3e-30 137.5 209 49.8
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.1e-29 134.4 167 49.7
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 9.6e-29 131.3 130 53.1
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 6.2e-28 128.6 143 52.4
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 4.4e-26 122.5 135 51.1
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 9.9e-26 121.3 138 47.8
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 8.4e-25 118.2 130 47.7
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.9e-24 117.1 104 59.6
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 7.1e-24 115.2 135 49.6
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 4.6e-23 112.5 148 48.6
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 3.0e-22 109.8 131 51.1
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 8.7e-22 108.2 149 47.0
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 2.1e-20 103.6 110 54.5
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.4e-19 100.9 111 51.4
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 4.6e-15 85.9 67 67.2
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 3.7e-12 76.3 135 40.7
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 3.1e-11 73.2 83 51.8
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 7.1e-08 62.0 78 53.8


User provided reference genes

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