Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p52200 Brassica napus HOM05D002343 ORTHO05D004258 7.4e-62 240.4 121 100.0
BraA03t14291Z Brassica rapa HOM05D002343 ORTHO05D004258 3.5e-59 231.5 122 95.9
BcaC06g30622 Brassica carinata HOM05D002343 ORTHO05D004258 2.7e-56 221.9 118 94.9
C07p50580 Brassica napus HOM05D002343 ORTHO05D004258 1.4e-55 219.5 119 95.0
A03p52190 Brassica napus HOM05D002343 ORTHO05D004258 2.3e-55 218.8 118 93.2
BcaNung02545 Brassica carinata HOM05D002343 ORTHO05D004258 5.2e-55 217.6 119 94.1
AT4G19880 Arabidopsis thaliana HOM05D002343 ORTHO05D004258 5.7e-54 214.2 118 90.7
AL7G34160 Arabidopsis lyrata HOM05D002343 ORTHO05D004258 7.5e-54 213.8 118 90.7
CARHR226660 Cardamine hirsuta HOM05D002343 ORTHO05D004258 9.7e-54 213.4 118 92.4
Carub.0007s2133 Capsella rubella HOM05D002343 ORTHO05D004258 1.3e-53 213.0 120 91.7
BolC7t45560H Brassica oleracea HOM05D002343 ORTHO05D004258 3.7e-53 211.5 119 92.4
Aa31LG6G2340 Aethionema arabicum HOM05D002343 ORTHO05D004258 5.7e-46 187.6 121 79.3
Thhalv10027346m.g Eutrema salsugineum HOM05D002343 ORTHO05D004258 1.6e-43 179.5 87 98.9
Sp7g18370 Schrenkiella parvula HOM05D002343 ORTHO05D004258 2.2e-42 175.6 87 97.7
THA.LOC104811533 Tarenaya hassleriana HOM05D002343 ORTHO05D004258 6.1e-40 167.5 93 86.0
Potri.015G121600 Populus trichocarpa HOM05D002343 ORTHO05D004258 5.2e-39 164.5 93 80.6
TWI38G1896 Tripterygium wilfordii HOM05D002343 ORTHO05D004258 6.8e-39 164.1 87 89.7
Sabra15G0138000 Salix brachista HOM05D002343 ORTHO05D004258 2.0e-38 162.5 93 79.6
COL.COLO4_30990 Corchorus olitorius HOM05D002343 ORTHO05D004258 2.8e-37 158.7 87 83.9
Eucgr.D01044 Eucalyptus grandis HOM05D002343 ORTHO05D004258 2.8e-37 158.7 87 87.4
Atru.chr10.496 Acer truncatum HOM05D002343 ORTHO05D004258 3.7e-37 158.3 87 85.1
Duzib160G0399 Durio zibethinus HOM05D002343 ORTHO05D004258 4.9e-37 157.9 90 81.1
Gohir.A05G145300 Gossypium hirsutum HOM05D002343 ORTHO05D004258 4.9e-37 157.9 101 75.2
Gorai.009G151800 Gossypium raimondii HOM05D002343 ORTHO05D004258 8.3e-37 157.1 109 73.4
Gohir.D05G147633 Gossypium hirsutum HOM05D002343 ORTHO05D004258 1.1e-36 156.8 109 73.4
Gohir.D05G147765 Gossypium hirsutum HOM05D002343 ORTHO05D004258 1.1e-36 156.8 109 73.4
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 1.4e-36 156.4 98 76.5
Prupe.4G111700 Prunus persica HOM05D002343 ORTHO05D004258 1.4e-36 156.4 87 86.2
Thecc.06G142500 Theobroma cacao HOM05D002343 ORTHO05D004258 1.4e-36 156.4 90 81.1
Thecc.06G142700 Theobroma cacao HOM05D002343 ORTHO05D004258 1.4e-36 156.4 90 81.1
MD10G1233400 Malus domestica HOM05D002343 ORTHO05D004258 1.8e-36 156.0 87 86.2
Manes.16G057800 Manihot esculenta HOM05D002343 ORTHO05D004258 1.8e-36 156.0 88 84.1
PGR083G0976 Punica granatum HOM05D002343 ORTHO05D004258 1.8e-36 156.0 89 82.0
QL06p029638 Quercus lobata HOM05D002343 ORTHO05D004258 1.8e-36 156.0 114 71.1
AL8G14400 Arabidopsis lyrata HOM05D002343 ORTHO05D004258 2.4e-36 155.6 86 86.0
Cfa000713 Carpinus fangiana HOM05D002343 ORTHO05D004258 2.4e-36 155.6 90 82.2
GSVIVG01012071001 Vitis vinifera HOM05D002343 ORTHO05D004258 2.4e-36 155.6 98 75.5
arahy.Tifrunner.gnm1.ann1.I4Y26E Arachis hypogaea HOM05D002343 ORTHO05D004258 3.1e-36 155.2 116 66.4
Thhalv10000959m.g Eutrema salsugineum HOM05D002343 ORTHO05D004258 3.1e-36 155.2 86 86.0
CARHR177710 Cardamine hirsuta HOM05D002343 ORTHO05D004258 4.1e-36 154.8 86 83.7
Medtr4g084040 Medicago truncatula HOM05D002343 ORTHO05D004258 4.1e-36 154.8 112 67.9
CANSAT35G1115 Cannabis sativa HOM05D002343 ORTHO05D004258 5.4e-36 154.5 113 69.0
AT5G45020 Arabidopsis thaliana HOM05D002343 ORTHO05D004258 7.0e-36 154.1 86 84.9
Lalb_Chr16g0385231 Lupinus albus HOM05D002343 ORTHO05D004258 7.0e-36 154.1 87 81.6
PSO675G4376 Papaver somniferum HOM05D002343 ORTHO05D004258 7.0e-36 154.1 87 81.6
Actinidia33708 Actinidia chinensis HOM05D002343 ORTHO05D004258 9.2e-36 153.7 93 78.5
Thecc.06G142200 Theobroma cacao HOM05D002343 ORTHO05D004258 9.2e-36 153.7 87 82.8
MSTRG.7594 Avicennia marina HOM05D002343 ORTHO05D004258 1.2e-35 153.3 89 79.8
Lj1A1145T22 Lonicera japonica HOM05D002343 ORTHO05D004258 1.2e-35 153.3 87 81.6
Ciclev10015774m.g Citrus clementina HOM05D002343 ORTHO05D004258 2.7e-35 152.1 111 68.5
DCAR_003781 Daucus carota HOM05D002343 ORTHO05D004258 2.7e-35 152.1 87 79.3
FvH4_3g12250 Fragaria vesca HOM05D002343 ORTHO05D004258 2.7e-35 152.1 87 82.8
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.7e-35 152.1 87 82.8
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.7e-35 152.1 87 82.8
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.7e-35 152.1 87 82.8
HanXRQChr15g0487361 Helianthus annuus HOM05D002343 ORTHO05D004258 2.7e-35 152.1 92 78.3
Dinv01672 Davidia involucrata HOM05D002343 ORTHO05D004258 3.5e-35 151.8 90 78.9
Psat7g130560 Pisum sativum HOM05D002343 ORTHO05D004258 3.5e-35 151.8 87 82.8
RhsimUnG0242200 Rhododendron simsii HOM05D000046 ORTHO05D004258 3.5e-35 151.8 93 76.3
RcHm_v2.0_Chr5g0020071 Rosa chinensis HOM05D002343 ORTHO05D004258 3.5e-35 151.8 87 82.8
SalBow6G5040 Salvia bowleyana HOM05D002343 ORTHO05D004258 3.5e-35 151.8 94 74.5
SalBow8G3202 Salvia bowleyana HOM05D002343 ORTHO05D004258 3.5e-35 151.8 94 74.5
Lsat_1_v5_gn_8_117141 Lactuca sativa HOM05D002343 ORTHO05D004258 4.5e-35 151.4 107 71.0
QL11p016333 Quercus lobata HOM05D002343 ORTHO05D004258 4.5e-35 151.4 89 80.9
unitig_32.g10989 Utricularia gibba HOM05D002343 ORTHO05D004258 5.9e-35 151.0 89 76.4
arahy.Tifrunner.gnm1.ann1.Q8EGAM Arachis hypogaea HOM05D002343 ORTHO05D004258 7.8e-35 150.6 86 81.4
Carub.0008s0330 Capsella rubella HOM05D002343 ORTHO05D004258 7.8e-35 150.6 86 82.6
CiPaw.09G077700 Carya illinoinensis HOM05D002343 ORTHO05D004258 7.8e-35 150.6 87 82.8
Nitab4.5_0013428g0010 Nicotiana tabacum HOM05D002343 ORTHO05D004258 7.8e-35 150.6 107 71.0
Ca_18764_v3 Cicer arietinum L. HOM05D002343 ORTHO05D004258 1.0e-34 150.2 87 80.5
MBI10_g36385_MAGBIO Magnolia biondii HOM05D002343 ORTHO05D004258 1.0e-34 150.2 93 75.3
CAN.G149.51 Capsicum annuum HOM05D002343 ORTHO05D004258 1.3e-34 149.8 90 76.7
CiPaw.09G077500 Carya illinoinensis HOM05D002343 ORTHO05D004258 1.3e-34 149.8 89 76.4
ClCG01G009460 Citrullus lanatus HOM05D002343 ORTHO05D004258 1.3e-34 149.8 87 80.5
MELO3C021757.2 Cucumis melo HOM05D002343 ORTHO05D004258 1.3e-34 149.8 87 80.5
CsaV3_1G046320 Cucumis sativus L. HOM05D002343 ORTHO05D004258 1.3e-34 149.8 87 79.3
Nitab4.5_0001288g0060 Nicotiana tabacum HOM05D002343 ORTHO05D004258 1.3e-34 149.8 87 80.5
TPR.G20988 Trifolium pratense HOM05D002343 ORTHO05D004258 1.3e-34 149.8 117 65.8
TAR626G1712 Trochodendron aralioides HOM05D001622 ORTHO05D002989 1.3e-34 149.8 111 70.3
CiPaw.09G077600 Carya illinoinensis HOM05D002343 ORTHO05D004258 1.7e-34 149.4 87 80.5
SGA_v2.0_scaffold175G39364 Striga asiatica HOM05D002343 ORTHO05D004258 1.7e-34 149.4 112 67.9
Migut.M01979 Erythranthe guttata HOM05D002343 ORTHO05D004258 2.3e-34 149.1 87 79.3
Nn7g38152 Nelumbo nucifera HOM05D002343 ORTHO05D004258 2.3e-34 149.1 103 72.8
vmacro03518 Vaccinium macrocarpon HOM05D002343 ORTHO05D004258 2.9e-34 148.7 87 80.5
Aqoxy1G01450 Aquilegia oxysepala HOM05D002343 ORTHO05D004258 3.8e-34 148.3 90 77.8
Sp2g09800 Schrenkiella parvula HOM05D002343 ORTHO05D004258 3.8e-34 148.3 86 82.6
PGSC0003DMG400010333 Solanum tuberosum HOM05D002343 ORTHO05D004258 3.8e-34 148.3 87 80.5
ECA232G4481 Erigeron canadensis HOM05D002343 ORTHO05D004258 5.0e-34 147.9 87 79.3
Rhsim03G0086200 Rhododendron simsii HOM05D002343 ORTHO05D004258 5.0e-34 147.9 98 73.5
Sed0022561 Sechium edule HOM05D002343 ORTHO05D004258 8.6e-34 147.1 87 79.3
Sopen02g018000 Solanum pennellii HOM05D002343 ORTHO05D004258 8.6e-34 147.1 87 79.3
Peaxi162Scf00149g00610 Petunia axillaris HOM05D002343 ORTHO05D004258 1.1e-33 146.7 98 74.5
Solyc02g068900.3 Solanum lycopersicum HOM05D002343 ORTHO05D004258 1.5e-33 146.4 89 76.4
EL10Ac8g18838 Beta vulgaris HOM05D002343 ORTHO05D004258 2.5e-33 145.6 113 67.3
Sc17g0004430 Simmondsia chinensis HOM05D002343 ORTHO05D004258 5.6e-33 144.4 111 66.7
CSS0015569 Camellia sinensis var. sinensis HOM05D002343 ORTHO05D004258 7.3e-33 144.1 109 67.9
CiPaw.10G064800 Carya illinoinensis HOM05D002343 ORTHO05D004258 9.5e-33 143.7 87 77.0
BolC2t10626H Brassica oleracea HOM05D002343 ORTHO05D004258 1.2e-32 143.3 86 77.9
MD10G1233200 Malus domestica HOM05D002343 ORTHO05D004258 1.2e-32 143.3 79 86.1
BcaC03g16717 Brassica carinata HOM05D002343 ORTHO05D004258 1.6e-32 142.9 86 77.9
BolC2t10634H Brassica oleracea HOM05D002343 ORTHO05D004258 2.1e-32 142.5 86 77.9
BraA02t07910Z Brassica rapa HOM05D002343 ORTHO05D004258 2.1e-32 142.5 86 77.9
Cc09_g06130 Coffea canephora HOM05D002343 ORTHO05D004258 2.1e-32 142.5 90 75.6
PSO541G1548 Papaver somniferum HOM05D002343 ORTHO05D004258 2.1e-32 142.5 78 82.1
PSO675G5936 Papaver somniferum HOM05D002343 ORTHO05D004258 2.1e-32 142.5 78 82.1
Phvul.002G098300 Phaseolus vulgaris HOM05D002343 ORTHO05D004258 2.8e-32 142.1 86 77.9
A02p28780 Brassica napus HOM05D002343 ORTHO05D004258 3.6e-32 141.7 86 77.9
Hund22371 Selenicereus undatus HOM05D002343 ORTHO05D004258 3.6e-32 141.7 88 77.3
BcaB07g30484 Brassica carinata HOM05D002343 ORTHO05D004258 6.1e-32 141.0 86 76.7
C02p45730 Brassica napus HOM05D002343 ORTHO05D004258 8.0e-32 140.6 86 76.7
GSVIVG01012072001 Vitis vinifera HOM05D002343 ORTHO05D004258 1.0e-31 140.2 89 71.9
MSTRG.16345 Avicennia marina HOM05D002343 ORTHO05D004258 1.4e-31 139.8 87 75.9
ATR1152G053 Amborella trichopoda HOM05D002343 ORTHO05D004258 3.0e-31 138.7 87 75.9
Glyma.20G020300 Glycine max HOM05D002343 ORTHO05D004258 3.0e-31 138.7 86 75.6
MD05G1251900 Malus domestica HOM05D002343 ORTHO05D004258 4.0e-31 138.3 80 80.0
AUR62033030 Chenopodium quinoa HOM05D002343 ORTHO05D004258 5.2e-31 137.9 91 74.7
Glyma.07G222400 Glycine max HOM05D002343 ORTHO05D004258 8.9e-31 137.1 86 74.4
Lj4g0013141 Lotus japonicus HOM05D002343 ORTHO05D004258 8.9e-31 137.1 87 75.9
MD05G1252400 Malus domestica HOM05D002343 ORTHO05D004258 9.8e-30 133.7 80 77.5
HPP92_027395 Vanilla planifolia HOM05D002343 ORTHO05D004258 2.2e-29 132.5 86 70.9
AUR62040763 Chenopodium quinoa HOM05D002343 ORTHO05D004258 2.9e-29 132.1 91 72.5
PSO675G1120 Papaver somniferum HOM05D002343 ORTHO05D004258 2.9e-29 132.1 78 73.1
Eucgr.L02304 Eucalyptus grandis HOM05D002343 ORTHO05D004258 1.1e-28 130.2 98 62.2
CARHR177730 Cardamine hirsuta HOM05D002343 ORTHO05D004258 2.4e-28 129.0 87 71.3
A06p46810 Brassica napus HOM05D002343 ORTHO05D004258 1.2e-27 126.7 87 67.8
BraA06t27553Z Brassica rapa HOM05D002343 ORTHO05D004258 1.2e-27 126.7 87 67.8
Cpa.g.sc135.12 Carica papaya HOM05D002343 ORTHO05D004258 1.6e-27 126.3 71 83.1
Cc09_g06140 Coffea canephora HOM05D002343 ORTHO05D004258 1.6e-27 126.3 87 66.7
Eucgr.E01874 Eucalyptus grandis HOM05D002343 ORTHO05D004258 1.6e-27 126.3 98 60.2
SEGI_31756 Sequoiadendron giganteum HOM05D002343 ORTHO05D004258 2.0e-27 125.9 113 57.5
AL8G14450 Arabidopsis lyrata HOM05D002343 ORTHO05D004258 2.7e-27 125.6 89 68.5
BcaC06g31577 Brassica carinata HOM05D002343 ORTHO05D004258 2.7e-27 125.6 87 67.8
CAN.G685.2 Capsicum annuum HOM05D002343 ORTHO05D004258 2.7e-27 125.6 114 58.8
AUR62033029 Chenopodium quinoa HOM05D002343 ORTHO05D004258 3.5e-27 125.2 93 65.6
Zm00001eb363840 Zea mays HOM05D002343 ORTHO05D004258 3.5e-27 125.2 86 68.6
Rhsim12G0131300 Rhododendron simsii HOM05D000046 ORTHO05D004258 1.0e-26 123.6 74 79.7
Carub.0008s0331 Capsella rubella HOM05D002343 ORTHO05D004258 6.6e-26 120.9 73 74.0
AUR62040764 Chenopodium quinoa HOM05D002343 ORTHO05D004258 1.9e-25 119.4 87 65.5
Zm00001eb284930 Zea mays HOM05D002343 ORTHO05D004258 2.5e-25 119.0 86 67.4
SEGI_16350 Sequoiadendron giganteum HOM05D002343 ORTHO05D004258 3.3e-25 118.6 77 71.4
Zm00001eb270730 Zea mays HOM05D002343 ORTHO05D004258 3.3e-25 118.6 86 65.1
Zm00001eb048240 Zea mays HOM05D002343 ORTHO05D004258 7.3e-25 117.5 87 64.4
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 1.6e-24 116.3 87 63.2
Zm00001eb132220 Zea mays HOM05D002343 ORTHO05D004258 3.6e-24 115.2 85 68.2
CBR_g19102 Chara braunii HOM05D002343 ORTHO05D004258 6.2e-24 114.4 88 58.0
CDE02G0085 Ceratophyllum demersum HOM05D002343 ORTHO05D004258 1.4e-23 113.2 87 63.2
SMO358G0163 Selaginella moellendorffii HOM05D002343 ORTHO05D004258 8.9e-23 110.5 87 57.5
Zm00001eb132230 Zea mays HOM05D002343 ORTHO05D004258 1.2e-22 110.2 85 65.9
MD05G1252100 Malus domestica HOM05D002343 ORTHO05D004258 1.5e-22 109.8 80 67.5
SMO358G0446 Selaginella moellendorffii HOM05D002343 ORTHO05D004258 2.6e-22 109.0 86 57.0
SMO358G0526 Selaginella moellendorffii HOM05D002343 ORTHO05D004258 2.6e-22 109.0 86 57.0
Mapoly0016s0180 Marchantia polymorpha HOM05D002343 ORTHO05D004258 3.4e-22 108.6 89 55.1
Pp3c14_3240 Physcomitrium patens HOM05D002343 ORTHO05D004258 4.4e-22 108.2 87 58.6
vmacro03517 Vaccinium macrocarpon HOM05D002343 ORTHO05D004258 9.8e-22 107.1 100 52.0
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 1.9e-20 102.8 87 62.1
AagrBONN_evm.TU.Sc2ySwM_368.765 Anthoceros agrestis HOM05D002343 ORTHO05D004258 3.5e-19 98.6 88 50.0
Eucgr.E01814 Eucalyptus grandis HOM05D002343 ORTHO05D004258 5.0e-18 94.7 84 54.8
BcaC06g34494 Brassica carinata HOM05D002343 ORTHO05D004258 1.9e-17 92.8 87 55.2
Cre12.g538100 Chlamydomonas reinhardtii HOM05D002343 ORTHO05D004258 4.3e-17 91.7 83 53.0
PRCOL_00005140 Prasinoderma coloniale HOM05D002343 ORTHO05D004258 2.3e-15 85.9 88 51.1
MCO15G436 Micromonas commoda HOM05D002343 ORTHO05D004258 2.0e-14 82.8 81 50.6
SMO358G0501 Selaginella moellendorffii HOM05D002343 ORTHO05D004258 3.4e-14 82.0 52 67.3
Cfa027191 Carpinus fangiana HOM05D002343 ORTHO05D004258 4.9e-13 78.2 62 54.8
Ca_29218_v3 Cicer arietinum L. HOM05D002343 ORTHO05D004258 2.7e-11 72.4 73 47.9
BolC7t43319H Brassica oleracea HOM05D002343 ORTHO05D004258 5.6e-09 64.7 37 70.3
Cre03.g154950 Chlamydomonas reinhardtii HOM05D002343 ORTHO05D004258 2.1e-08 62.8 67 46.3
Zm00001eb202530 Zea mays HOM05D002343 ORTHO05D004258 6.2e-08 61.2 130 35.4
CBR_g495 Chara braunii HOM05D002343 ORTHO05D009170 5.8e-06 54.7 72 38.9


User provided reference genes

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