Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 7.3e-130 467.2 235 100.0
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 9.8e-127 456.8 235 97.4
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 3.2e-117 425.2 235 91.1
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.4e-112 409.8 226 92.0
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 1.8e-112 409.5 224 93.3
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 1.3e-110 403.3 233 85.8
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.9e-109 399.4 233 85.4
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 9.2e-109 397.1 234 85.0
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 2.1e-108 396.0 233 84.1
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 2.1e-108 396.0 233 84.1
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 2.1e-108 396.0 233 85.0
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 6.0e-108 394.4 228 86.4
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 6.6e-107 391.0 228 86.0
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 1.1e-106 390.2 228 86.0
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.2e-105 386.7 234 82.9
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 1.6e-105 386.3 228 84.6
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 6.2e-105 384.4 233 82.4
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 1.8e-104 382.9 228 83.8
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 2.9e-102 375.6 206 90.3
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 5.1e-99 364.8 229 79.5
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.2e-95 353.6 234 76.9
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 2.8e-89 332.4 235 70.2
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.8e-89 332.4 215 77.7
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.0e-88 328.6 237 72.2
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 6.9e-88 327.8 237 71.3
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 1.5e-87 326.6 232 72.0
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.0e-87 326.2 225 74.2
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 2.6e-87 325.9 229 73.8
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 2.6e-87 325.9 236 71.6
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 3.4e-87 325.5 237 68.8
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 3.4e-87 325.5 211 76.8
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.4e-87 325.5 234 71.4
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 4.5e-87 325.1 234 71.4
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 7.6e-87 324.3 235 72.3
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 2.2e-86 322.8 228 68.9
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.9e-86 322.4 234 71.4
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 3.8e-86 322.0 236 70.8
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 4.9e-86 321.6 213 74.6
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.9e-85 319.7 235 69.8
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 2.4e-85 319.3 228 71.9
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 7.1e-85 317.8 214 73.8
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.6e-84 316.6 224 72.3
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.7e-84 315.8 228 68.4
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 3.5e-84 315.5 224 69.2
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.5e-84 315.5 228 68.9
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 6.0e-84 314.7 209 75.1
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 3.0e-83 312.4 217 72.4
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 5.1e-83 311.6 215 72.6
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 6.7e-83 311.2 224 70.5
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 6.7e-83 311.2 217 72.4
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 6.7e-83 311.2 229 67.7
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 8.7e-83 310.8 224 70.1
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 8.7e-83 310.8 223 73.1
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 1.1e-82 310.5 217 73.3
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.1e-82 310.5 229 67.7
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 1.5e-82 310.1 230 67.4
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 1.9e-82 309.7 259 62.5
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.9e-82 309.7 224 69.2
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 3.3e-82 308.9 229 67.7
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 4.3e-82 308.5 207 74.4
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.3e-82 308.5 226 68.6
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 4.3e-82 308.5 236 67.4
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 4.3e-82 308.5 239 66.1
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 5.6e-82 308.1 226 68.1
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.6e-82 308.1 226 68.1
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 7.4e-82 307.8 221 68.8
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 7.4e-82 307.8 213 74.2
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 9.6e-82 307.4 229 68.6
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 2.1e-81 306.2 229 69.0
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 2.1e-81 306.2 223 70.4
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 2.8e-81 305.8 236 66.9
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 6.2e-81 304.7 234 67.5
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 6.2e-81 304.7 236 67.4
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 8.1e-81 304.3 215 71.6
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.1e-81 304.3 220 69.5
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 8.1e-81 304.3 207 74.4
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.4e-80 303.5 239 64.4
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 1.8e-80 303.1 207 73.4
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 2.4e-80 302.8 236 66.9
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.0e-80 302.0 235 68.1
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 5.3e-80 301.6 293 57.7
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 5.3e-80 301.6 229 65.9
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 6.9e-80 301.2 236 68.2
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 1.2e-79 300.4 255 62.4
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.2e-79 300.4 234 67.1
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.0e-79 299.7 236 65.7
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 3.4e-79 298.9 219 66.2
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.3e-78 297.0 224 68.8
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 2.2e-78 296.2 213 70.0
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 2.9e-78 295.8 214 72.0
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 2.9e-78 295.8 218 66.1
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 3.8e-78 295.4 240 62.1
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.4e-78 294.3 231 67.5
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.4e-78 294.3 231 67.5
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 8.4e-78 294.3 241 63.1
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 1.4e-77 293.5 213 70.0
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 9.3e-77 290.8 237 63.7
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 1.2e-76 290.4 216 69.0
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.6e-76 290.0 209 67.9
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 4.6e-76 288.5 218 67.4
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 6.0e-76 288.1 222 65.8
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 6.0e-76 288.1 240 63.3
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 7.9e-76 287.7 207 67.1
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.8e-75 286.6 213 70.0
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 1.8e-75 286.6 255 59.6
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 3.0e-75 285.8 223 65.5
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 5.1e-75 285.0 217 68.7
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 3.7e-73 278.9 236 63.1
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 4.8e-73 278.5 208 64.4
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.8e-72 276.6 216 63.9
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.8e-72 276.6 206 67.5
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 6.9e-72 274.6 247 60.3
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.2e-71 273.9 255 58.4
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.3e-70 270.4 168 79.8
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.3e-70 270.4 216 62.5
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.9e-69 266.5 319 48.0
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 7.2e-69 264.6 228 61.0
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 4.6e-68 261.9 229 60.3
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 4.6e-68 261.9 229 59.8
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 3.0e-67 259.2 236 60.6
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.1e-66 257.3 204 63.2
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 5.7e-66 255.0 170 72.9
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-65 253.8 162 75.9
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 9.4e-61 237.7 225 60.0
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 1.6e-60 236.9 235 55.7
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 2.3e-59 233.0 225 52.9
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 2.3e-59 233.0 214 60.3
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.5e-58 230.3 223 57.8
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 4.3e-58 228.8 228 55.7
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 2.4e-56 223.0 174 60.3
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 6.9e-56 221.5 131 80.2
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.0e-55 219.9 212 57.5
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 4.5e-55 218.8 162 66.0
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.0e-54 217.6 217 51.6
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 6.5e-54 214.9 119 85.7
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 6.1e-52 208.4 264 44.3
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.8e-51 206.8 145 72.4
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 2.3e-51 206.5 104 96.2
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 6.7e-51 204.9 116 80.2
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 1.5e-50 203.8 170 65.3
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 3.3e-50 202.6 145 72.4
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 3.7e-49 199.1 156 64.1
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.9e-45 186.8 119 73.1
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 2.1e-44 183.3 204 50.0
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 9.7e-42 174.5 224 47.8
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 3.2e-37 159.5 146 57.5
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 4.2e-37 159.1 186 46.8
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 1.2e-36 157.5 302 36.4
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 3.6e-36 156.0 223 45.7
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.7e-33 147.1 177 48.0
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 8.5e-30 134.8 81 79.0
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.6e-26 123.2 124 58.1
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 3.1e-24 116.3 74 75.7
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 2.7e-23 113.2 108 59.3
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.3e-22 110.2 166 41.6
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 2.3e-22 110.2 67 77.6
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 5.0e-22 109.0 150 46.7
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.1e-21 107.8 114 52.6
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 2.5e-21 106.7 98 59.2
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 1.2e-20 104.4 81 66.7
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 8.0e-20 101.7 98 56.1
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 1.4e-19 100.9 66 74.2
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.8e-19 100.5 59 81.4
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.3e-19 100.1 209 35.9
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 2.6e-18 96.7 167 38.9
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 1.7e-14 84.0 158 36.7
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.1e-13 81.3 89 50.6
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.9e-13 80.5 97 50.5
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.8e-11 73.9 80 48.8
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 2.0e-10 70.5 172 31.4
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 1.7e-09 67.4 52 71.2
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 2.9e-09 66.6 46 67.4
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 7.8e-07 58.5 75 44.0
Cre16.g667701 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 8.6e-06 55.1 44 65.9


User provided reference genes

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