Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.4e-259 899.0 438 100.0
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.3e-257 892.5 438 98.9
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.3e-257 892.5 438 98.9
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.3e-257 892.5 438 98.9
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.8e-251 872.1 437 95.9
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.0e-249 866.3 441 95.0
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 2.9e-249 864.8 433 95.6
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 3.8e-249 864.4 433 95.8
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 3.9e-246 854.4 448 92.6
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.1e-245 852.8 437 93.4
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 2.2e-244 848.6 441 93.0
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 2.2e-241 838.6 435 91.3
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 3.2e-240 834.7 439 91.1
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.3e-238 828.6 436 89.9
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 7.4e-237 823.5 437 89.9
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 9.4e-224 780.0 434 85.5
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 6.1e-223 777.3 434 84.3
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 6.1e-223 777.3 433 84.8
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.0e-222 776.5 436 83.0
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 3.0e-222 775.0 437 83.3
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 3.0e-222 775.0 437 82.2
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 6.8e-222 773.9 433 84.1
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.6e-221 771.9 451 81.8
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.6e-221 771.9 436 83.5
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.6e-221 771.9 436 83.7
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.3e-220 769.6 429 83.0
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 1.3e-220 769.6 433 83.1
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 1.7e-220 769.2 436 83.5
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 2.2e-220 768.8 434 83.9
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 6.3e-220 767.3 437 81.9
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 6.3e-220 767.3 429 84.6
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.4e-219 766.1 434 83.2
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.4e-219 766.1 427 83.6
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.4e-219 765.4 429 83.4
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.1e-219 764.6 429 83.0
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 9.1e-219 763.5 429 83.0
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 1.2e-218 763.1 434 82.9
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 1.2e-218 763.1 435 80.9
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.0e-218 762.3 435 81.1
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 3.5e-218 761.5 433 82.2
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 4.5e-218 761.1 434 82.3
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 4.5e-218 761.1 429 83.0
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 5.9e-218 760.8 439 81.8
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 7.7e-218 760.4 437 83.1
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 1.3e-217 759.6 436 81.4
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.7e-217 759.2 429 82.8
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 3.8e-217 758.1 433 81.8
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.0e-217 757.7 429 82.5
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 5.0e-217 757.7 426 84.0
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 8.6e-217 756.9 437 81.5
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.5e-216 756.1 427 83.4
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.5e-216 756.1 433 80.8
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.9e-216 755.7 434 80.2
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 4.2e-216 754.6 433 81.1
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 5.5e-216 754.2 433 81.5
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.6e-215 752.7 433 81.3
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 1.6e-215 752.7 438 80.8
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 2.1e-215 752.3 434 80.9
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.8e-215 751.9 432 81.0
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.8e-215 751.9 432 81.0
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 3.6e-215 751.5 434 80.9
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 3.6e-215 751.5 433 80.4
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 8.0e-215 750.4 432 79.9
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.4e-214 749.6 434 81.6
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.4e-214 749.6 434 80.0
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.4e-214 749.6 446 80.0
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.4e-214 749.6 436 81.2
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 5.2e-214 747.7 434 79.5
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 8.9e-214 746.9 434 80.0
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 8.9e-214 746.9 437 81.7
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 2.0e-213 745.7 438 79.9
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 7.5e-213 743.8 489 72.8
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 1.1e-211 740.0 434 78.3
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 2.4e-211 738.8 465 75.7
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.0e-209 733.4 437 78.7
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.1e-208 729.9 435 79.1
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.1e-208 729.9 520 70.4
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.9e-208 729.2 505 71.1
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.5e-208 728.8 433 79.2
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 9.5e-208 726.9 434 78.3
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.8e-207 725.3 436 77.3
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 4.7e-207 724.5 436 77.8
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 2.7e-202 708.8 434 75.6
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 3.5e-202 708.4 413 81.6
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 4.6e-202 708.0 430 76.0
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 8.6e-201 703.7 427 77.0
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 1.1e-200 703.4 427 78.0
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 9.5e-200 700.3 427 76.6
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.2e-199 699.9 415 80.2
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 3.6e-199 698.4 406 81.0
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.8e-198 696.0 396 82.6
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 7.5e-197 690.6 404 79.7
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.7e-196 689.5 442 73.8
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 7.8e-194 680.6 436 73.9
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.8e-194 680.6 427 76.6
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.0e-193 680.2 441 71.7
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.5e-192 675.6 426 75.6
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 3.3e-192 675.2 390 81.0
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.2e-191 673.3 427 74.5
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 2.3e-190 669.1 427 74.0
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 2.9e-188 662.1 358 90.2
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 5.1e-185 651.4 426 71.6
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 9.5e-184 647.1 437 69.1
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 5.8e-181 637.9 437 66.8
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.2e-179 632.1 436 72.2
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.9e-177 625.2 433 67.2
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.2e-175 620.2 426 68.3
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 4.4e-173 611.7 330 86.1
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.2e-171 605.1 433 65.8
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 7.1e-171 604.4 339 82.6
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 3.5e-170 602.1 337 84.3
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.9e-168 596.3 339 83.5
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 9.6e-168 594.0 435 64.6
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 6.4e-164 581.3 387 72.4
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.3e-160 568.9 430 67.2
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.8e-159 565.1 440 63.0
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 2.0e-157 559.7 425 60.7
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 2.6e-157 559.3 386 74.6
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.8e-157 558.1 438 60.5
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 6.4e-156 554.7 433 60.0
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.5e-149 533.5 337 75.7
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.1e-147 527.3 354 72.0
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.3e-145 520.4 296 82.4
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.5e-144 516.2 431 58.5
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 7.2e-131 471.5 440 53.2
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 9.1e-110 401.4 350 59.1
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.6e-106 390.6 219 85.4
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.0e-105 387.9 243 74.9
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 1.9e-91 340.5 230 70.0
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 1.6e-77 294.3 185 75.1
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.9e-75 287.3 176 76.1
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.4e-73 281.2 157 84.7
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 9.6e-67 258.5 143 82.5
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 4.0e-65 253.1 197 66.5
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.7e-61 240.4 132 85.6
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.9e-57 225.7 227 56.8
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.5e-51 207.2 113 83.2
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 3.3e-51 206.8 139 77.0
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.7e-47 194.5 107 79.4
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.1e-36 156.4 90 82.2
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.1e-33 148.7 93 74.2
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 5.0e-31 139.8 165 46.1
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 4.2e-30 136.7 204 40.2
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 4.6e-29 133.3 82 78.0
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 1.0e-23 115.5 80 66.2
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 5.0e-23 113.2 78 69.2
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.5e-22 109.8 247 32.4
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 3.9e-20 103.6 63 77.8
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 2.5e-19 100.9 57 75.4
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 7.4e-19 99.4 65 61.5
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 2.9e-15 87.4 121 43.0
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 6.5e-15 86.3 96 50.0
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 1.6e-13 81.6 38 89.5
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 2.2e-10 71.2 74 51.4
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 7.0e-09 66.2 45 64.4
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 9.4e-06 55.8 69 47.8


User provided reference genes

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