Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 4.8e-79 297.7 149 100.0
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 1.1e-78 296.6 149 99.3
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 5.3e-78 294.3 149 99.3
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 5.3e-78 294.3 149 99.3
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 5.3e-78 294.3 149 99.3
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 6.1e-74 280.8 149 94.6
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 6.3e-63 244.2 148 82.4
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 9.2e-62 240.4 148 82.4
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-59 233.4 149 79.2
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 2.8e-58 228.8 150 80.7
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 2.8e-58 228.8 150 80.7
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 2.8e-58 228.8 150 80.7
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.6e-56 222.2 147 76.9
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 7.5e-56 220.7 147 76.9
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 6.4e-55 217.6 149 75.8
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 9.2e-54 213.8 146 77.4
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 2.7e-53 212.2 138 78.3
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 6.0e-53 211.1 148 76.4
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.9e-38 162.9 161 56.5
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 2.4e-38 162.5 131 63.4
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 4.1e-38 161.8 154 56.5
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 7.1e-38 161.0 156 55.8
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 7.1e-38 161.0 153 57.5
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-37 160.2 150 58.0
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.2e-37 160.2 153 57.5
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.2e-37 160.2 132 63.6
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 1.6e-37 159.8 153 56.9
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 1.6e-37 159.8 155 54.8
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.1e-37 159.5 152 55.3
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.7e-37 159.1 153 57.5
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.7e-37 159.1 154 55.2
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 4.6e-37 158.3 150 56.7
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 4.6e-37 158.3 155 54.8
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 7.8e-37 157.5 152 53.9
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 1.3e-36 156.8 154 53.9
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.3e-36 156.8 131 61.8
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.7e-36 156.4 131 62.6
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 2.3e-36 156.0 148 54.7
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.3e-36 156.0 129 60.5
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 2.3e-36 156.0 149 55.0
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 8.6e-36 154.1 127 61.4
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 1.5e-35 153.3 155 55.5
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 1.5e-35 153.3 155 55.5
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 2.5e-35 152.5 144 54.9
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.5e-35 152.5 154 53.2
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 3.3e-35 152.1 151 55.0
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 3.3e-35 152.1 162 51.2
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 3.3e-35 152.1 151 55.0
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 5.6e-35 151.4 144 54.2
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 9.5e-35 150.6 154 51.3
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.6e-34 148.7 129 59.7
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 6.2e-34 147.9 129 57.4
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 8.1e-34 147.5 128 59.4
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.0e-32 142.9 126 56.3
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 6.4e-31 137.9 148 50.7
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 1.4e-25 120.2 114 55.3
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 5.2e-25 118.2 150 45.3
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 5.2e-25 118.2 132 45.5
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.2e-24 117.1 129 45.7
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.0e-24 116.3 133 48.9
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 4.4e-24 115.2 133 48.1
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 2.9e-23 112.5 146 44.5
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 3.8e-23 112.1 129 46.5
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 6.4e-23 111.3 126 44.4
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 6.4e-23 111.3 142 41.5
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 6.4e-23 111.3 133 45.1
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.1e-22 110.5 153 38.6
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 1.4e-22 110.2 151 37.7
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 1.9e-22 109.8 133 42.9
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 1.9e-22 109.8 131 44.3
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 2.4e-22 109.4 138 43.5
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 2.4e-22 109.4 164 41.5
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 3.2e-22 109.0 141 44.0
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 3.2e-22 109.0 138 44.9
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 4.2e-22 108.6 159 39.0
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 4.2e-22 108.6 129 45.0
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 5.4e-22 108.2 131 44.3
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.2e-21 107.1 133 43.6
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.2e-21 107.1 132 45.5
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 1.2e-21 107.1 144 41.7
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.2e-21 107.1 137 41.6
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.1e-21 106.3 136 40.4
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.7e-21 105.9 136 41.2
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 3.5e-21 105.5 136 41.2
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.6e-21 105.1 137 42.3
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 4.6e-21 105.1 131 43.5
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 4.6e-21 105.1 132 43.2
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 6.0e-21 104.8 139 43.9
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 6.0e-21 104.8 132 47.7
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 7.8e-21 104.4 133 42.9
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 1.0e-20 104.0 133 43.6
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.3e-20 103.6 134 41.8
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 1.3e-20 103.6 168 40.5
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.3e-20 103.6 162 40.7
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 2.3e-20 102.8 134 47.0
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 2.3e-20 102.8 132 40.9
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 3.0e-20 102.4 140 43.6
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 3.9e-20 102.1 133 41.4
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 3.9e-20 102.1 134 41.8
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 3.9e-20 102.1 158 38.6
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 5.1e-20 101.7 133 42.1
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 5.1e-20 101.7 133 42.1
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 5.1e-20 101.7 133 41.4
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 6.6e-20 101.3 125 44.0
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 6.6e-20 101.3 124 43.5
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 6.6e-20 101.3 136 40.4
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 8.7e-20 100.9 135 40.7
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 8.7e-20 100.9 133 42.1
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 8.7e-20 100.9 158 38.6
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 1.1e-19 100.5 134 41.8
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 1.1e-19 100.5 134 38.8
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.1e-19 100.5 132 40.2
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.5e-19 100.1 123 44.7
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.5e-19 100.1 135 38.5
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.9e-19 99.8 167 35.3
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.9e-19 99.8 128 42.2
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 3.3e-19 99.0 132 40.2
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 3.3e-19 99.0 129 39.5
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 3.3e-19 99.0 163 36.2
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.3e-19 98.6 136 42.6
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 4.3e-19 98.6 155 36.1
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 4.3e-19 98.6 157 35.7
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.3e-19 98.6 132 41.7
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.3e-19 98.6 132 41.7
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 5.6e-19 98.2 168 35.1
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 5.6e-19 98.2 138 41.3
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 9.6e-19 97.4 81 58.0
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 9.6e-19 97.4 140 41.4
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 1.3e-18 97.1 123 40.7
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 1.3e-18 97.1 130 40.8
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.3e-18 97.1 137 40.1
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.1e-18 96.3 133 40.6
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 2.1e-18 96.3 132 39.4
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 2.1e-18 96.3 137 42.3
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 2.8e-18 95.9 169 32.5
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 2.8e-18 95.9 132 40.9
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 2.8e-18 95.9 130 43.8
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 3.6e-18 95.5 144 38.2
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 3.6e-18 95.5 154 37.0
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.6e-18 95.5 130 43.8
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 8.1e-18 94.4 132 40.9
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 1.8e-17 93.2 133 36.8
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 2.4e-17 92.8 126 42.1
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 4.0e-17 92.0 142 35.2
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 5.3e-17 91.7 126 37.3
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 5.3e-17 91.7 133 41.4
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 6.9e-17 91.3 139 41.0
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 9.0e-17 90.9 124 41.9
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 3.4e-16 89.0 139 40.3
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 3.4e-16 89.0 151 39.7
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 7.6e-16 87.8 151 39.7
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 9.9e-16 87.4 136 36.0
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.3e-15 87.0 135 40.0
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.3e-15 87.0 136 36.0
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.3e-15 87.0 172 32.6
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.7e-15 86.7 130 42.3
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.2e-15 86.3 136 40.4
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.2e-15 86.3 136 40.4
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.9e-15 85.9 150 38.7
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.9e-15 85.1 121 41.3
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 6.4e-15 84.7 136 39.0
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.9e-14 83.2 136 38.2
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.9e-14 83.2 135 36.3
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 2.4e-14 82.8 137 35.0
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 4.2e-14 82.0 169 36.7
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 7.1e-14 81.3 136 38.2
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 7.1e-14 81.3 127 36.2
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 9.3e-14 80.9 132 33.3
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 2.1e-13 79.7 130 34.6
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.7e-13 79.3 88 44.3
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 4.6e-13 78.6 130 39.2
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.8e-12 76.6 93 43.0
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.3e-12 76.3 136 34.6
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 3.0e-12 75.9 191 28.8
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 3.0e-12 75.9 152 34.9
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 5.1e-12 75.1 123 34.1
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 1.3e-10 70.5 90 38.9
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 6.9e-09 64.7 91 35.2
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 4.9e-07 58.5 65 49.2
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 8.4e-07 57.8 96 38.5
Solyc02g089250.4 Solanum lycopersicum HOM05D003328 ORTHO05D003722 4.2e-06 55.5 96 34.4
PGSC0003DMG400001380 Solanum tuberosum HOM05D003328 ORTHO05D003722 5.5e-06 55.1 96 34.4
Sopen02g034040 Solanum pennellii HOM05D003328 ORTHO05D003722 7.1e-06 54.7 96 34.4


User provided reference genes

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