Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 0.0e+00 1640.6 834 100.0
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 0.0e+00 1627.5 834 99.0
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 0.0e+00 1562.4 834 95.1
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 0.0e+00 1558.1 835 95.7
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 0.0e+00 1558.1 835 95.7
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 0.0e+00 1499.2 835 93.1
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 0.0e+00 1454.5 801 90.0
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 0.0e+00 1439.1 840 87.9
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 0.0e+00 1431.8 840 87.3
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 0.0e+00 1430.2 840 86.8
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 0.0e+00 1391.3 840 85.1
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 0.0e+00 1379.0 844 83.1
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 0.0e+00 1217.2 875 73.8
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 2.2e-293 1012.3 851 62.9
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 8.2e-293 1010.4 824 64.3
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 5.9e-291 1004.2 857 62.0
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 5.0e-290 1001.1 854 62.6
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 4.2e-289 998.0 854 62.4
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 9.4e-289 996.9 857 61.7
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 1.6e-288 996.1 851 62.7
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 2.7e-288 995.3 857 61.8
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 3.6e-288 995.0 851 62.5
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 3.3e-286 988.4 862 61.6
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 2.4e-284 982.2 854 61.7
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 3.1e-284 981.9 855 61.1
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 4.1e-284 981.5 854 61.6
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 1.5e-283 979.5 849 61.4
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.7e-282 976.1 855 60.9
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 8.5e-282 973.8 855 60.6
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 4.2e-281 971.5 852 59.5
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 5.5e-281 971.1 855 60.6
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 3.6e-280 968.4 853 60.7
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 2.3e-279 965.7 857 60.3
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 3.9e-279 964.9 859 60.8
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 2.6e-278 962.2 857 60.4
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 3.1e-276 955.3 827 61.5
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 7.0e-276 954.1 856 60.2
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 2.9e-274 948.7 852 59.5
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 5.0e-274 948.0 853 60.4
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 3.2e-273 945.3 831 59.8
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 4.2e-273 944.9 833 60.6
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 5.5e-273 944.5 903 57.4
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 7.2e-273 944.1 857 58.5
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 1.6e-272 943.0 833 60.6
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.6e-272 943.0 895 57.9
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 1.8e-271 939.5 845 59.6
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 2.3e-271 939.1 826 60.5
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 2.3e-271 939.1 813 61.1
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 3.9e-271 938.3 853 58.9
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 1.5e-270 936.4 854 59.0
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 4.4e-270 934.9 844 60.0
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 2.2e-269 932.6 844 59.5
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 4.8e-269 931.4 835 59.2
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 8.2e-269 930.6 850 58.7
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 1.8e-268 929.5 851 58.4
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 2.4e-268 929.1 849 59.4
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 3.5e-267 925.2 830 60.1
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 4.5e-267 924.9 868 58.9
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 5.9e-267 924.5 868 58.9
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 1.0e-266 923.7 820 60.4
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 8.5e-266 920.6 846 59.3
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 1.9e-265 919.5 815 61.2
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 3.2e-265 918.7 832 58.5
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 1.4e-263 913.3 850 58.5
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 2.3e-263 912.5 849 59.5
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 4.4e-262 908.3 794 61.2
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 4.4e-262 908.3 849 58.7
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 7.5e-262 907.5 848 57.9
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 3.7e-261 905.2 840 58.8
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 6.3e-261 904.4 853 58.3
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 8.3e-261 904.0 845 58.5
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 4.1e-260 901.7 1007 51.3
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 1.6e-259 899.8 877 56.6
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 2.7e-259 899.0 837 57.7
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 2.9e-258 895.6 860 56.0
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 3.8e-258 895.2 840 58.9
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 2.5e-257 892.5 816 59.1
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 4.1e-252 875.2 816 56.7
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 9.1e-252 874.0 853 56.5
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 2.0e-251 872.8 910 54.6
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 2.5e-249 865.9 814 58.8
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 2.5e-249 865.9 921 52.9
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 2.1e-248 862.8 863 54.7
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 3.4e-246 855.5 831 56.4
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 7.5e-246 854.4 851 55.7
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 5.6e-241 838.2 771 59.8
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 1.8e-239 833.2 811 56.0
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 4.9e-237 825.1 808 55.2
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 4.6e-235 818.5 812 55.4
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.0e-234 817.4 835 54.7
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 1.4e-231 807.0 829 53.8
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.4e-230 802.4 831 54.5
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 1.1e-217 760.8 723 58.0
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 1.3e-210 737.3 756 54.5
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 9.3e-188 661.4 750 51.9
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.2e-181 640.2 911 43.9
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.4e-180 637.5 893 45.0
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 3.6e-171 606.3 697 51.6
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.2e-166 591.3 491 63.7
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 7.7e-158 562.0 817 44.4
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 6.5e-157 558.9 840 43.1
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.0e-138 498.4 401 63.8
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 4.1e-135 486.5 400 62.0
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 1.7e-128 464.5 621 46.2
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 1.1e-127 461.8 372 64.8
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 4.7e-115 419.9 462 51.9
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 4.0e-114 416.8 311 67.8
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.3e-109 401.7 379 57.5
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.8e-98 364.8 440 49.3
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 4.9e-88 330.1 214 73.4
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 5.8e-81 306.6 808 30.7
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.8e-75 287.7 175 76.0
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.9e-71 275.0 150 84.7
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.2e-71 274.2 233 60.1
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.5e-71 273.5 544 37.9
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.5e-71 273.5 544 37.9
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 6.3e-67 260.0 388 42.5
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 9.3e-63 246.1 137 83.2
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 7.9e-62 243.0 293 47.4
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.2e-59 235.0 268 51.9
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 6.3e-59 233.4 145 76.6
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.4e-55 222.2 137 73.7
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.3e-50 203.8 230 44.3
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.9e-48 198.0 117 74.4
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 1.0e-45 189.5 426 29.8
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 6.1e-38 163.7 161 52.8
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 4.1e-34 151.0 129 59.7
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 1.4e-29 136.0 264 33.7
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 1.2e-22 112.8 129 48.1
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 1.0e-21 109.8 61 82.0
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 4.4e-20 104.4 58 82.8
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 2.8e-19 101.7 145 43.4
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 3.7e-19 101.3 173 42.2
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 1.9e-15 89.0 213 27.2
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 2.0e-12 79.0 60 61.7
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 1.3e-11 76.3 57 63.2
BraA04t17647Z Brassica rapa HOM05D005283 ORTHO05D006769 1.1e-10 73.2 43 76.7
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 5.4e-10 70.9 33 87.9
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 7.3e-07 60.5 37 75.7
Cre13.g580450 Chlamydomonas reinhardtii HOM05D005283 ORTHO05D006769 1.2e-06 59.7 197 26.4
C05p44590 Brassica napus HOM05D005283 ORTHO05D021637 4.7e-06 57.8 37 73.0


User provided reference genes

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