Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 8.3e-244 846.7 441 100.0
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 6.1e-231 803.9 441 96.6
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 2.6e-144 516.2 519 63.0
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.8e-129 466.8 519 59.0
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 4.0e-129 465.7 458 63.5
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 4.8e-127 458.8 497 58.8
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.5e-123 447.2 510 58.2
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 2.1e-122 443.4 478 59.4
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 2.1e-122 443.4 478 59.4
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 1.4e-121 440.7 491 57.6
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.8e-113 413.7 515 54.6
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 4.6e-109 399.1 513 54.6
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 1.5e-96 357.5 512 49.8
C07p46840 Brassica napus HOM05D006793 ORTHO05D003476 4.9e-87 325.9 311 63.3
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 3.5e-85 319.7 490 45.3
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 6.0e-61 239.2 547 38.0
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 4.2e-38 163.3 462 32.9
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 5.5e-38 162.9 455 33.2
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 9.4e-38 162.2 497 34.4
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 2.1e-37 161.0 508 32.7
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.1e-37 161.0 455 33.4
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 3.9e-36 156.8 458 33.6
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 6.7e-36 156.0 466 33.0
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 1.1e-35 155.2 502 30.7
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 5.7e-35 152.9 463 31.3
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 7.4e-35 152.5 497 32.0
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.8e-34 150.6 482 30.3
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 3.7e-34 150.2 495 31.9
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 8.2e-34 149.1 470 31.7
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 2.4e-33 147.5 472 30.7
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 3.1e-33 147.1 461 33.8
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 7.0e-33 146.0 462 32.3
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 9.1e-33 145.6 465 32.9
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 1.5e-32 144.8 457 31.3
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 1.5e-32 144.8 520 30.6
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 2.0e-32 144.4 506 29.8
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 2.0e-32 144.4 464 30.8
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 3.5e-32 143.7 466 32.0
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 3.5e-32 143.7 531 30.7
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 3.5e-32 143.7 477 30.8
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 4.5e-32 143.3 507 29.0
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 5.9e-32 142.9 498 29.3
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 7.7e-32 142.5 560 30.5
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 7.7e-32 142.5 481 31.0
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 1.3e-31 141.7 461 33.8
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 2.2e-31 141.0 520 29.0
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 2.9e-31 140.6 481 29.3
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 3.8e-31 140.2 518 31.1
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 3.8e-31 140.2 501 29.9
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 6.5e-31 139.4 549 28.6
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 8.5e-31 139.0 491 33.2
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 8.5e-31 139.0 486 29.6
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.5e-30 138.3 517 31.3
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 1.5e-30 138.3 452 31.4
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 3.2e-30 137.1 461 30.2
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 4.2e-30 136.7 447 31.8
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 4.2e-30 136.7 462 29.7
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 7.2e-30 136.0 481 31.6
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 9.4e-30 135.6 480 31.2
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.6e-29 134.8 514 28.8
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 4.7e-29 133.3 514 28.6
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 4.7e-29 133.3 500 30.2
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 4.7e-29 133.3 454 29.3
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 6.1e-29 132.9 501 29.5
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.0e-28 132.1 461 30.8
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 2.3e-28 131.0 507 29.0
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 8.8e-28 129.0 475 30.1
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.1e-27 128.6 503 30.8
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 2.0e-27 127.9 482 31.3
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 1.7e-26 124.8 103 63.1
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 2.2e-26 124.4 520 27.9
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 2.2e-26 124.4 160 46.9
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 6.3e-26 122.9 519 28.7
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 1.1e-25 122.1 124 54.0
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 1.4e-25 121.7 538 28.4
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 1.4e-25 121.7 506 28.1
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 1.4e-25 121.7 508 29.3
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 1.4e-25 121.7 525 29.1
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.8e-25 121.3 500 27.8
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 1.8e-25 121.3 521 28.0
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.8e-25 121.3 502 28.9
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 4.1e-25 120.2 95 64.2
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 2.0e-24 117.9 86 68.6
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 2.0e-24 117.9 89 66.3
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 1.3e-23 115.2 149 49.7
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 1.3e-23 115.2 98 60.2
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 2.9e-23 114.0 505 28.3
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 5.0e-23 113.2 505 26.5
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 1.1e-22 112.1 353 32.9
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 1.5e-22 111.7 123 52.8
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 2.5e-22 110.9 505 26.5
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 7.2e-22 109.4 498 27.3
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 9.4e-22 109.0 128 50.0
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 3.6e-21 107.1 465 27.7
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 6.1e-21 106.3 538 26.6
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.0e-20 105.5 413 30.3
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 1.0e-20 105.5 134 47.0
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 1.4e-20 105.1 448 28.3
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 2.3e-20 104.4 90 58.9
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 5.2e-20 103.2 514 26.8
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 1.3e-18 98.6 474 28.5
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 3.7e-18 97.1 86 59.3
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.8e-17 94.7 434 26.5
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 2.4e-17 94.4 84 54.8
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 3.5e-16 90.5 454 26.2
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.0e-15 89.0 467 26.6
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 1.3e-15 88.6 407 26.5
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 2.2e-15 87.8 404 26.5
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 8.5e-15 85.9 79 53.2
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 2.5e-14 84.3 59 69.5
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 3.2e-14 84.0 130 37.7
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.0e-12 79.0 249 30.1
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 2.3e-12 77.8 428 25.7
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 1.5e-11 75.1 207 30.9
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 2.0e-11 74.7 79 40.5
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 7.5e-11 72.8 75 41.3
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 9.8e-11 72.4 85 41.2
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 9.8e-11 72.4 82 42.7
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 1.7e-10 71.6 70 45.7
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 3.7e-10 70.5 76 39.5
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 3.7e-10 70.5 115 36.5
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 6.3e-10 69.7 75 40.0
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 8.3e-10 69.3 82 39.0
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 1.1e-09 68.9 338 27.5
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 1.8e-09 68.2 85 37.6
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.4e-09 67.8 75 38.7
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 3.1e-09 67.4 88 35.2
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 7.0e-09 66.2 425 27.3
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 7.0e-09 66.2 58 46.6
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 7.0e-09 66.2 75 37.3
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 9.2e-09 65.9 74 43.2
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 1.2e-08 65.5 80 47.5
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 1.6e-08 65.1 68 42.6
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 2.0e-08 64.7 77 40.3
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 2.7e-08 64.3 87 34.5
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 2.7e-08 64.3 59 47.5
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 3.5e-08 63.9 76 38.2
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 3.5e-08 63.9 170 25.3
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 3.5e-08 63.9 88 34.1
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 4.5e-08 63.5 106 33.0
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 4.5e-08 63.5 60 41.7
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 4.5e-08 63.5 81 38.3
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 5.9e-08 63.2 81 39.5
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 5.9e-08 63.2 75 38.7
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 7.7e-08 62.8 58 43.1
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.0e-07 62.4 54 48.1
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 1.0e-07 62.4 303 25.4
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.0e-07 62.4 59 45.8
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 1.3e-07 62.0 54 44.4
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 1.7e-07 61.6 232 26.7
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 1.7e-07 61.6 79 38.0
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 1.7e-07 61.6 123 30.9
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 2.3e-07 61.2 85 31.8
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 3.8e-07 60.5 78 38.5
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 3.8e-07 60.5 54 48.1
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 3.8e-07 60.5 86 32.6
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 5.0e-07 60.1 73 37.0
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 5.0e-07 60.1 214 28.5
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 5.0e-07 60.1 85 30.6
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 5.0e-07 60.1 113 33.6
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 5.0e-07 60.1 219 26.0
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.1e-06 58.9 54 46.3
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 1.5e-06 58.5 56 41.1
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 1.5e-06 58.5 64 39.1
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 1.9e-06 58.2 83 32.5
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 1.9e-06 58.2 249 25.7
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 2.5e-06 57.8 82 32.9
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 2.5e-06 57.8 87 36.8
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 2.5e-06 57.8 91 36.3
Zm00001eb248340 Zea mays HOM05D046263 ORTHO05D003476 2.5e-06 57.8 79 36.7
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 4.3e-06 57.0 50 42.0
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 5.6e-06 56.6 75 32.0
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 5.6e-06 56.6 122 25.4
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 7.3e-06 56.2 61 36.1
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 9.5e-06 55.8 50 42.0
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 9.5e-06 55.8 50 42.0
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 9.5e-06 55.8 84 39.3
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 9.5e-06 55.8 55 36.4


User provided reference genes

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