Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 1.5e-63 246.1 134 100.0
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 1.3e-59 233.0 134 95.5
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 1.4e-56 223.0 124 98.4
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 4.4e-55 218.0 124 96.8
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 4.4e-55 218.0 124 96.8
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 8.5e-51 203.8 123 83.7
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 1.9e-50 202.6 122 87.7
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 4.2e-50 201.4 122 86.9
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 1.6e-49 199.5 129 84.5
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 2.1e-49 199.1 129 83.7
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 2.3e-48 195.7 123 86.2
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 3.0e-48 195.3 126 89.7
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 1.7e-46 189.5 125 87.2
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 2.8e-46 188.7 122 82.0
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 2.8e-46 188.7 122 82.0
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 1.1e-42 176.8 125 84.0
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 1.8e-40 169.5 124 79.8
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 4.4e-39 164.9 133 70.7
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 9.8e-39 163.7 134 73.1
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 7.0e-37 157.5 82 89.0
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 2.0e-31 139.4 83 71.1
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 2.0e-31 139.4 88 69.3
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 2.6e-31 139.0 79 74.7
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 3.4e-31 138.7 79 74.7
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 3.4e-31 138.7 83 71.1
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 1.7e-30 136.3 79 72.2
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 1.7e-30 136.3 79 73.4
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 1.7e-30 136.3 79 73.4
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 3.7e-30 135.2 77 72.7
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 4.9e-30 134.8 79 70.9
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 4.9e-30 134.8 84 65.5
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 6.4e-30 134.4 79 72.2
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 8.3e-30 134.0 77 71.4
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 1.4e-29 133.3 77 72.7
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 1.4e-29 133.3 80 67.5
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 1.9e-29 132.9 119 53.8
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 2.4e-29 132.5 77 70.1
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.2e-29 132.1 75 73.3
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 3.2e-29 132.1 79 70.9
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 4.1e-29 131.7 74 74.3
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 4.1e-29 131.7 77 70.1
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 4.1e-29 131.7 76 72.4
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 4.1e-29 131.7 83 67.5
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 5.4e-29 131.3 115 54.8
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 7.0e-29 131.0 77 72.7
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 7.0e-29 131.0 77 72.7
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 7.0e-29 131.0 77 70.1
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 7.0e-29 131.0 77 68.8
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 7.0e-29 131.0 78 70.5
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 7.0e-29 131.0 75 72.0
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 1.2e-28 130.2 77 70.1
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 1.2e-28 130.2 74 74.3
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 1.6e-28 129.8 77 68.8
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 1.6e-28 129.8 77 71.4
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 2.0e-28 129.4 75 72.0
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 2.0e-28 129.4 76 69.7
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 2.7e-28 129.0 79 70.9
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 2.7e-28 129.0 74 74.3
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 2.7e-28 129.0 74 73.0
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 2.7e-28 129.0 77 70.1
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 3.5e-28 128.6 76 71.1
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 3.5e-28 128.6 78 67.9
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 6.0e-28 127.9 75 72.0
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 6.0e-28 127.9 79 65.8
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 6.0e-28 127.9 77 67.5
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 7.8e-28 127.5 73 74.0
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 7.8e-28 127.5 79 69.6
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 7.8e-28 127.5 79 69.6
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 1.7e-27 126.3 81 67.9
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 2.3e-27 125.9 79 68.4
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 3.0e-27 125.6 76 67.1
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 3.0e-27 125.6 74 73.0
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 5.0e-27 124.8 79 64.6
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 5.0e-27 124.8 71 76.1
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 6.6e-27 124.4 76 68.4
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 1.1e-26 123.6 74 68.9
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 1.1e-26 123.6 73 71.2
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 1.5e-26 123.2 74 70.3
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 2.5e-26 122.5 75 65.3
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 3.3e-26 122.1 76 68.4
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 3.3e-26 122.1 74 66.2
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 4.3e-26 121.7 74 67.6
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 4.3e-26 121.7 75 65.3
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 9.5e-26 120.6 73 67.1
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 9.5e-26 120.6 74 68.9
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 1.2e-25 120.2 74 67.6
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 1.6e-25 119.8 106 50.9
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 2.8e-25 119.0 79 62.0
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 3.6e-25 118.6 74 68.9
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 8.1e-25 117.5 74 64.9
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 1.1e-24 117.1 75 68.0
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 1.4e-24 116.7 75 68.0
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 1.8e-24 116.3 66 75.8
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 3.1e-24 115.5 73 64.4
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 4.0e-24 115.2 74 63.5
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 4.0e-24 115.2 126 46.8
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 6.8e-24 114.4 75 62.7
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 8.9e-24 114.0 75 61.3
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 8.9e-24 114.0 75 61.3
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 8.9e-24 114.0 75 61.3
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 8.9e-24 114.0 75 61.3
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 8.9e-24 114.0 74 63.5
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 2.0e-23 112.8 76 63.2
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 3.4e-23 112.1 75 58.7
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 3.4e-23 112.1 75 58.7
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 3.4e-23 112.1 75 58.7
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 4.4e-23 111.7 75 60.0
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 2.9e-22 109.0 75 57.3
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 2.9e-22 109.0 75 57.3
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 2.1e-20 102.8 74 56.8
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 1.7e-19 99.8 74 54.1
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 3.0e-19 99.0 74 51.4
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 6.6e-19 97.8 75 50.7
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 8.6e-19 97.4 59 66.1
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 1.1e-18 97.1 54 77.8
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 4.3e-18 95.1 66 60.6
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 4.3e-18 95.1 66 60.6
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 1.8e-16 89.7 60 60.0
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 8.9e-16 87.4 78 47.4
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 3.5e-12 75.5 69 50.7
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 8.1e-09 64.3 69 43.5
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 1.1e-08 63.9 69 43.5
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 1.8e-08 63.2 69 43.5
arahy.Tifrunner.gnm1.ann1.0X4CPT Arachis hypogaea HOM05D001848 ORTHO05D001295 3.1e-08 62.4 69 42.0
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 3.1e-08 62.4 68 44.1
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 3.1e-08 62.4 66 43.9
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 8.9e-08 60.8 120 33.3
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 8.9e-08 60.8 70 44.3
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 2.6e-07 59.3 81 35.8
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 4.4e-07 58.5 77 35.1
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 5.8e-07 58.2 69 37.7
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 5.8e-07 58.2 70 40.0
MD11G1207300 Malus domestica HOM05D001848 ORTHO05D001295 7.6e-07 57.8 68 44.1
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 9.9e-07 57.4 65 38.5
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 1.7e-06 56.6 65 38.5
FvH4_3g30320 Fragaria vesca HOM05D001848 ORTHO05D001295 2.2e-06 56.2 63 42.9
Prupe.4G228100 Prunus persica HOM05D001848 ORTHO05D001295 2.2e-06 56.2 68 41.2
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 2.2e-06 56.2 66 42.4
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 2.2e-06 56.2 66 43.9
arahy.Tifrunner.gnm1.ann1.FN75LP Arachis hypogaea HOM05D001848 ORTHO05D001295 3.8e-06 55.5 64 43.8
FAN21G1579 Fragaria x ananassa HOM05D001848 ORTHO05D001295 3.8e-06 55.5 63 42.9
arahy.Tifrunner.gnm1.ann1.04HYJ8 Arachis hypogaea HOM05D001848 ORTHO05D001295 6.4e-06 54.7 60 43.3
CAN.G862.20 Capsicum annuum HOM05D001848 ORTHO05D001295 6.4e-06 54.7 58 44.8
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 8.4e-06 54.3 64 42.2
Cpa.g.sc1200.2 Carica papaya HOM05D001848 ORTHO05D001295 8.4e-06 54.3 65 41.5


User provided reference genes

Program Settings