Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 1.2e-32 142.5 71 100.0
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 3.4e-30 134.4 68 98.5
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 1.7e-29 132.1 67 94.0
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 1.7e-29 132.1 66 97.0
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 1.7e-29 132.1 66 97.0
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 6.4e-29 130.2 67 94.0
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 8.3e-29 129.8 68 92.6
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 1.1e-28 129.4 67 94.0
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 1.1e-28 129.4 67 91.0
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 1.1e-28 129.4 65 95.4
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 1.4e-28 129.0 69 94.2
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 2.4e-28 128.3 69 94.2
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 2.4e-28 128.3 69 94.2
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 2.4e-28 128.3 69 94.2
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 2.4e-28 128.3 65 95.4
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 3.9e-26 120.9 65 89.2
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 3.3e-25 117.9 69 84.1
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 6.2e-24 113.6 69 84.1
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 6.2e-24 113.6 69 84.1
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 1.8e-23 112.1 69 82.6
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 1.8e-23 112.1 69 82.6
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 1.8e-23 112.1 69 82.6
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.1e-19 98.6 66 68.2
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.1e-19 98.6 66 68.2
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 6.0e-19 97.1 60 73.3
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.3e-18 95.9 66 68.2
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 8.6e-18 93.2 60 70.0
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 1.1e-17 92.8 60 70.0
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.9e-17 92.0 60 68.3
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 4.3e-17 90.9 65 60.0
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 5.6e-17 90.5 69 73.9
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 5.6e-17 90.5 65 63.1
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 7.3e-17 90.1 65 61.5
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 7.3e-17 90.1 65 64.6
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 7.3e-17 90.1 66 62.1
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 9.5e-17 89.7 65 64.6
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 9.5e-17 89.7 66 62.1
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 9.5e-17 89.7 66 63.6
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.2e-16 89.4 66 60.6
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.6e-16 89.0 59 71.2
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 2.1e-16 88.6 65 61.5
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 2.1e-16 88.6 67 59.7
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 3.6e-16 87.8 68 57.4
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 3.6e-16 87.8 66 60.6
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 4.7e-16 87.4 68 60.3
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 4.7e-16 87.4 65 63.1
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 6.2e-16 87.0 59 69.5
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 8.1e-16 86.7 59 67.8
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 8.1e-16 86.7 65 61.5
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 1.1e-15 86.3 65 56.9
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 1.1e-15 86.3 65 56.9
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.4e-15 85.9 59 67.8
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.3e-15 85.1 68 58.8
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.3e-15 85.1 59 69.5
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 2.3e-15 85.1 60 65.0
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 3.1e-15 84.7 60 58.3
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 3.1e-15 84.7 60 58.3
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 4.0e-15 84.3 68 57.4
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.2e-15 84.0 66 54.5
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.2e-15 84.0 69 53.6
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.8e-15 83.6 66 54.5
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 2.6e-14 81.6 60 61.7
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.6e-14 81.6 60 61.7
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.4e-14 81.3 68 55.9
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.4e-14 81.3 68 55.9
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 3.4e-14 81.3 66 56.1
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 5.8e-14 80.5 65 56.9
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 5.8e-14 80.5 68 57.4
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.8e-14 80.5 59 62.7
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 7.5e-14 80.1 68 54.4
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 9.9e-14 79.7 65 55.4
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.3e-13 79.3 69 55.1
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.2e-13 78.6 65 56.9
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.2e-13 78.6 65 56.9
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 3.7e-13 77.8 70 54.3
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.4e-13 77.0 65 56.9
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 8.3e-13 76.6 68 51.5
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 8.3e-13 76.6 58 62.1
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.1e-12 76.3 68 54.4
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 1.1e-12 76.3 66 54.5
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 1.4e-12 75.9 59 59.3
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.9e-12 75.5 59 57.6
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 3.2e-12 74.7 65 53.8
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 3.2e-12 74.7 61 62.3
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.2e-12 74.7 66 54.5
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 4.1e-12 74.3 61 55.7
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 4.1e-12 74.3 64 56.2
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 5.4e-12 73.9 58 60.3
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.4e-12 73.9 65 53.8
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 5.4e-12 73.9 61 59.0
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 5.4e-12 73.9 61 59.0
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 7.1e-12 73.6 68 52.9
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 7.1e-12 73.6 59 55.9
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 7.1e-12 73.6 66 54.5
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 7.1e-12 73.6 66 54.5
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 9.2e-12 73.2 65 55.4
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 9.2e-12 73.2 58 58.6
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.2e-11 72.8 70 54.3
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 2.1e-11 72.0 57 59.6
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.7e-11 71.6 68 52.9
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 2.7e-11 71.6 64 53.1
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.5e-11 71.2 65 53.8
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.6e-11 70.9 60 53.3
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.6e-11 70.9 60 53.3
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 6.0e-11 70.5 65 49.2
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 6.0e-11 70.5 65 52.3
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 6.0e-11 70.5 61 54.1
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 7.8e-11 70.1 66 53.0
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 7.8e-11 70.1 57 57.9
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 1.3e-10 69.3 58 55.2
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 1.3e-10 69.3 59 57.6
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.3e-10 68.6 62 53.2
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.3e-10 68.6 63 55.6
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.0e-10 68.2 63 52.4
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 3.0e-10 68.2 58 58.6
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 3.9e-10 67.8 62 53.2
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 3.9e-10 67.8 49 59.2
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 5.1e-10 67.4 59 55.9
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 6.6e-10 67.0 66 48.5
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 6.6e-10 67.0 69 46.4
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 1.1e-09 66.2 58 53.4
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-09 65.9 64 54.7
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-09 65.9 64 54.7
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 1.5e-09 65.9 68 47.1
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 1.9e-09 65.5 58 56.9
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 2.5e-09 65.1 58 55.2
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.5e-09 65.1 63 49.2
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.5e-09 65.1 57 54.4
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 3.3e-09 64.7 58 56.9
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.3e-09 64.7 56 57.1
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.3e-09 64.7 56 57.1
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.3e-09 64.3 57 54.4
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.3e-09 64.3 57 54.4
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 5.6e-09 63.9 59 50.8
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 7.3e-09 63.5 67 52.2
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 1.2e-08 62.8 57 54.4
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 1.2e-08 62.8 59 52.5
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.8e-08 61.6 58 55.2
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 3.6e-08 61.2 66 48.5
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 3.6e-08 61.2 51 52.9
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 3.6e-08 61.2 68 47.1
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 6.2e-08 60.5 59 50.8
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 6.2e-08 60.5 57 49.1
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 6.2e-08 60.5 51 52.9
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 6.2e-08 60.5 68 47.1
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 1.1e-07 59.7 62 46.8
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 1.1e-07 59.7 62 46.8
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 1.1e-07 59.7 70 47.1
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 1.1e-07 59.7 58 51.7
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 1.4e-07 59.3 62 50.0
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.8e-07 58.9 66 48.5
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 1.8e-07 58.9 58 51.7
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 2.4e-07 58.5 58 51.7
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 4.0e-07 57.8 58 53.4
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 5.2e-07 57.4 65 44.6
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 5.2e-07 57.4 58 50.0
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 6.8e-07 57.0 53 54.7
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 6.8e-07 57.0 38 68.4
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 6.8e-07 57.0 63 52.4
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 6.8e-07 57.0 58 51.7
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 8.9e-07 56.6 55 52.7
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 1.5e-06 55.8 64 50.0
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 2.0e-06 55.5 58 50.0
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 2.6e-06 55.1 59 45.8
Actinidia24523 Actinidia chinensis HOM05D004166 ORTHO05D004992 4.4e-06 54.3 38 63.2
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 7.6e-06 53.5 58 50.0


User provided reference genes

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