Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 1.9e-101 372.5 185 100.0
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 1.2e-100 369.8 185 99.5
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 8.1e-100 367.1 185 98.4
A03p07720 Brassica napus HOM05D004224 ORTHO05D016135 1.5e-93 346.3 186 93.5
C02p16100 Brassica napus HOM05D004224 ORTHO05D016135 1.0e-78 297.0 185 82.7
C06p44760 Brassica napus HOM05D004224 ORTHO05D016135 2.6e-50 202.6 185 63.2
C03p85080 Brassica napus HOM05D004224 ORTHO05D016135 6.7e-38 161.4 125 69.6
BolC7t44656H Brassica oleracea HOM05D004687 ORTHO05D016135 1.5e-34 150.2 185 51.4
BcaC01g00842 Brassica carinata HOM05D018769 ORTHO05D032469 2.6e-29 132.9 125 59.2
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 3.0e-22 109.4 71 80.3
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.7e-20 103.6 73 74.0
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 2.4e-19 99.8 73 71.2
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 2.4e-19 99.8 73 69.9
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 3.1e-19 99.4 73 74.0
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 3.1e-19 99.4 73 74.0
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 3.1e-19 99.4 73 74.0
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 3.1e-19 99.4 73 71.2
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 5.3e-19 98.6 72 69.4
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 5.3e-19 98.6 72 69.4
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 5.3e-19 98.6 72 73.6
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 9.1e-19 97.8 73 69.9
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 1.6e-18 97.1 86 64.0
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 1.6e-18 97.1 86 64.0
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.0e-17 94.4 72 68.1
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 1.0e-17 94.4 72 68.1
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 1.0e-17 94.4 72 68.1
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 6.5e-17 91.7 73 64.4
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 5.5e-16 88.6 75 61.3
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 2.1e-15 86.7 85 54.1
BcaB04g21275 Brassica carinata HOM05D004224 ORTHO05D006437 3.0e-14 82.8 53 71.7
Thhalv10020552m.g Eutrema salsugineum HOM05D004224 ORTHO05D006437 8.8e-14 81.3 53 69.8
BolC1t05538H Brassica oleracea HOM05D004224 ORTHO05D006437 1.5e-13 80.5 52 71.2
BraA01t04368Z Brassica rapa HOM05D004224 ORTHO05D006437 1.5e-13 80.5 46 76.1
Sp3g06610 Schrenkiella parvula HOM05D004224 ORTHO05D006437 4.4e-13 79.0 53 66.0
Carub.0003s0725 Capsella rubella HOM05D004224 ORTHO05D006437 5.7e-13 78.6 53 67.9
AT3G07670 Arabidopsis thaliana HOM05D004224 ORTHO05D006437 7.5e-13 78.2 53 67.9
AL3G19030 Arabidopsis lyrata HOM05D004224 ORTHO05D006437 9.8e-13 77.8 53 66.0
BolC3t20800H Brassica oleracea HOM05D004687 ORTHO05D016135 1.3e-12 77.4 42 92.9
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 1.7e-12 77.0 52 65.4
CARHR082380 Cardamine hirsuta HOM05D004224 ORTHO05D006437 2.2e-12 76.6 53 64.2
BolC7t44176H Brassica oleracea HOM05D004687 ORTHO05D016135 2.8e-12 76.3 42 92.9
Aa31LG5G18250 Aethionema arabicum HOM05D004224 ORTHO05D006437 6.3e-12 75.1 46 67.4
BolC7t41056H Brassica oleracea HOM05D004224 ORTHO05D006437 1.4e-11 73.9 53 66.0
MBI15_g45882_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 3.5e-10 69.3 47 66.0
TWI75G0912 Tripterygium wilfordii HOM05D004224 ORTHO05D006437 3.5e-10 69.3 40 72.5
MBI15_g41427_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 4.5e-10 68.9 40 72.5
MD17G1118300 Malus domestica HOM05D004224 ORTHO05D006437 4.5e-10 68.9 43 65.1
COL.COLO4_19641 Corchorus olitorius HOM05D004224 ORTHO05D006437 5.9e-10 68.6 41 63.4
Thecc.01G198200 Theobroma cacao HOM05D004224 ORTHO05D006437 5.9e-10 68.6 41 65.9
FvH4_6g40490 Fragaria vesca HOM05D004224 ORTHO05D006437 7.7e-10 68.2 43 65.1
FAN10G1506 Fragaria x ananassa HOM05D004224 ORTHO05D006437 7.7e-10 68.2 43 65.1
FAN14G2615 Fragaria x ananassa HOM05D004224 ORTHO05D006437 7.7e-10 68.2 43 65.1
Rhsim06G0178000 Rhododendron simsii HOM05D004224 ORTHO05D006437 7.7e-10 68.2 42 64.3
RcHm_v2.0_Chr2g0155741 Rosa chinensis HOM05D004224 ORTHO05D006437 7.7e-10 68.2 43 67.4
Actinidia09800 Actinidia chinensis HOM05D004224 ORTHO05D006437 1.0e-09 67.8 40 67.5
CSS0035947 Camellia sinensis var. sinensis HOM05D004224 ORTHO05D006437 1.0e-09 67.8 40 65.0
FAN05G1563 Fragaria x ananassa HOM05D004224 ORTHO05D006437 1.0e-09 67.8 40 70.0
FAN09G3807 Fragaria x ananassa HOM05D004224 ORTHO05D006437 1.0e-09 67.8 40 70.0
Nn1g07539 Nelumbo nucifera HOM05D004224 ORTHO05D006437 1.0e-09 67.8 40 67.5
Gohir.D07G171000 Gossypium hirsutum HOM05D004224 ORTHO05D006437 1.3e-09 67.4 41 63.4
Gorai.001G190900 Gossypium raimondii HOM05D004224 ORTHO05D006437 1.3e-09 67.4 41 63.4
Cpa.g.sc136.38 Carica papaya HOM05D004224 ORTHO05D006437 1.7e-09 67.0 40 65.0
Ciclev10014974m.g Citrus clementina HOM05D004224 ORTHO05D006437 1.7e-09 67.0 40 67.5
Lj6g0004652 Lotus japonicus HOM05D004224 ORTHO05D006437 1.7e-09 67.0 42 66.7
Lalb_Chr04g0259131 Lupinus albus HOM05D004224 ORTHO05D006437 1.7e-09 67.0 40 70.0
Haze_12613 Corylus avellana HOM05D004224 ORTHO05D006437 2.9e-09 66.2 50 56.0
Glyma.13G010500 Glycine max HOM05D004224 ORTHO05D006437 2.9e-09 66.2 40 65.0
Lj1A799T35 Lonicera japonica HOM05D004224 ORTHO05D006437 2.9e-09 66.2 40 67.5
QL04p067662 Quercus lobata HOM05D004224 ORTHO05D006437 2.9e-09 66.2 40 65.0
ClCG02G002970 Citrullus lanatus HOM05D004224 ORTHO05D006437 3.8e-09 65.9 43 65.1
Haze_12602 Corylus avellana HOM05D004224 ORTHO05D006437 3.8e-09 65.9 50 54.0
Lsat_1_v5_gn_7_97380 Lactuca sativa HOM05D004224 ORTHO05D006437 3.8e-09 65.9 40 70.0
arahy.Tifrunner.gnm1.ann1.CZ6VEU Arachis hypogaea HOM05D004224 ORTHO05D006437 5.0e-09 65.5 49 57.1
arahy.Tifrunner.gnm1.ann1.ZYNV17 Arachis hypogaea HOM05D004224 ORTHO05D006437 5.0e-09 65.5 49 57.1
MSTRG.14913 Avicennia marina HOM05D004224 ORTHO05D006437 5.0e-09 65.5 42 66.7
EL10Ac9g22662 Beta vulgaris HOM05D004224 ORTHO05D006437 5.0e-09 65.5 40 65.0
Cfa014211 Carpinus fangiana HOM05D004224 ORTHO05D006437 5.0e-09 65.5 48 56.2
Nitab4.5_0004852g0010 Nicotiana tabacum HOM05D004224 ORTHO05D006437 5.0e-09 65.5 43 62.8
Oeu040454.1 Olea europaea HOM05D004224 ORTHO05D006437 5.0e-09 65.5 42 66.7
Phvul.006G005700 Phaseolus vulgaris HOM05D004224 ORTHO05D006437 5.0e-09 65.5 40 65.0
Sed0013057 Sechium edule HOM05D004224 ORTHO05D006437 5.0e-09 65.5 43 67.4
Sc21g0000480 Simmondsia chinensis HOM05D004224 ORTHO05D006437 5.0e-09 65.5 40 65.0
vmacro12069 Vaccinium macrocarpon HOM05D004224 ORTHO05D006437 5.0e-09 65.5 40 62.5
PGR031G1258 Punica granatum HOM05D004224 ORTHO05D006437 6.5e-09 65.1 44 59.1
Sabra14G0129100 Salix brachista HOM05D004224 ORTHO05D006437 6.5e-09 65.1 40 62.5
ATR0751G026 Amborella trichopoda HOM05D004224 ORTHO05D006437 8.6e-09 64.7 45 57.8
CDE05G3447 Ceratophyllum demersum HOM05D004224 ORTHO05D006437 8.6e-09 64.7 44 63.6
Hma1.2p1_0629F.1_g192230 Hydrangea macrophylla HOM05D004224 ORTHO05D006437 8.6e-09 64.7 40 62.5
Peaxi162Scf00612g00137 Petunia axillaris HOM05D004224 ORTHO05D006437 8.6e-09 64.7 42 64.3
TAR629G0565 Trochodendron aralioides HOM05D004224 ORTHO05D006437 8.6e-09 64.7 40 67.5
MELO3C024188.2 Cucumis melo HOM05D004224 ORTHO05D006437 1.1e-08 64.3 40 67.5
ECA236G4771 Erigeron canadensis HOM05D004224 ORTHO05D006437 1.1e-08 64.3 43 67.4
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.5e-08 63.9 80 48.8
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.5e-08 63.9 80 48.8
CAN.G437.10 Capsicum annuum HOM05D004224 ORTHO05D006437 1.5e-08 63.9 41 65.9
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 1.5e-08 63.9 79 46.8
Potri.014G169300 Populus trichocarpa HOM05D004224 ORTHO05D006437 1.5e-08 63.9 40 60.0
Prupe.3G196100 Prunus persica HOM05D004224 ORTHO05D006437 1.5e-08 63.9 40 65.0
SGA_v2.0_scaffold73G24493 Striga asiatica HOM05D004224 ORTHO05D006437 1.5e-08 63.9 40 62.5
Migut.M00055 Erythranthe guttata HOM05D004224 ORTHO05D006437 1.9e-08 63.5 40 62.5
Manes.13G060800 Manihot esculenta HOM05D004224 ORTHO05D006437 1.9e-08 63.5 40 60.0
GSVIVG01030117001 Vitis vinifera HOM05D004224 ORTHO05D006437 1.9e-08 63.5 40 62.5
CANSAT64G1501 Cannabis sativa HOM05D004224 ORTHO05D006437 2.5e-08 63.2 40 62.5
HanXRQChr11g0329421 Helianthus annuus HOM05D004224 ORTHO05D006437 2.5e-08 63.2 40 65.0
Medtr3g082690 Medicago truncatula HOM05D004224 ORTHO05D006437 2.5e-08 63.2 40 65.0
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.5e-08 63.2 70 50.0
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 2.5e-08 63.2 70 47.1
Sopen07g023840 Solanum pennellii HOM05D004224 ORTHO05D006437 4.2e-08 62.4 41 63.4
Aqoxy7G02030 Aquilegia oxysepala HOM05D004224 ORTHO05D006437 5.5e-08 62.0 40 62.5
CsaV3_7G002430 Cucumis sativus L. HOM05D004224 ORTHO05D006437 5.5e-08 62.0 40 65.0
TAR517G0001 Trochodendron aralioides HOM05D004224 ORTHO05D016135 5.5e-08 62.0 40 65.0
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 7.2e-08 61.6 64 51.6
Ca_16340_v3 Cicer arietinum L. HOM05D004224 ORTHO05D006437 9.5e-08 61.2 40 65.0
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 9.5e-08 61.2 62 58.1
PGSC0003DMG400017407 Solanum tuberosum HOM05D004224 ORTHO05D006437 9.5e-08 61.2 41 63.4
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 9.5e-08 61.2 61 52.5
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 1.2e-07 60.8 40 60.0
PSO541G4615 Papaver somniferum HOM05D004224 ORTHO05D006437 1.2e-07 60.8 40 62.5
PSO675G8516 Papaver somniferum HOM05D004224 ORTHO05D006437 1.2e-07 60.8 40 62.5
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.2e-07 60.8 70 47.1
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.2e-07 60.8 70 47.1
TPR.G21510 Trifolium pratense HOM05D004224 ORTHO05D006437 1.2e-07 60.8 40 60.0
AUR62014995 Chenopodium quinoa HOM05D004224 ORTHO05D006437 1.6e-07 60.5 40 65.0
Psat5g104720 Pisum sativum HOM05D004224 ORTHO05D006437 1.6e-07 60.5 40 62.5
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.6e-07 60.5 72 48.6
Solyc07g045310.4 Solanum lycopersicum HOM05D004224 ORTHO05D006437 1.6e-07 60.5 41 61.0
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 2.8e-07 59.7 70 47.1
Gorai.004G061300 Gossypium raimondii HOM05D004224 ORTHO05D006437 2.8e-07 59.7 46 50.0
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 2.8e-07 59.7 70 45.7
DCAR_019670 Daucus carota HOM05D004224 ORTHO05D006437 3.6e-07 59.3 41 58.5
Os02g0725200 Oryza sativa ssp. japonica HOM05D004224 ORTHO05D006437 3.6e-07 59.3 43 55.8
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 4.7e-07 58.9 70 47.1
AUR62035877 Chenopodium quinoa HOM05D004224 ORTHO05D006437 4.7e-07 58.9 39 64.1
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 4.7e-07 58.9 61 50.8
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 4.7e-07 58.9 70 47.1
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 4.7e-07 58.9 72 47.2
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 4.7e-07 58.9 61 54.1
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 4.7e-07 58.9 78 46.2
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 6.1e-07 58.5 52 55.8
BolC6t36307H Brassica oleracea HOM05D000313 ORTHO05D021935 6.1e-07 58.5 47 59.6
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 8.0e-07 58.2 70 45.7
Gohir.A08G049300 Gossypium hirsutum HOM05D004224 ORTHO05D006437 8.0e-07 58.2 40 55.0
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 8.0e-07 58.2 72 45.8
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 1.0e-06 57.8 72 48.6
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.0e-06 57.8 70 47.1
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.8e-06 57.0 70 45.7
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 1.8e-06 57.0 80 46.2
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 2.3e-06 56.6 70 42.9
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 2.3e-06 56.6 84 39.3
SEGI_13327 Sequoiadendron giganteum HOM05D004224 ORTHO05D006437 2.3e-06 56.6 46 50.0
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.3e-06 56.6 52 61.5
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 2.3e-06 56.6 52 61.5
BolC2t10414H Brassica oleracea HOM05D004224 ORTHO05D021935 3.0e-06 56.2 47 57.4
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.0e-06 56.2 57 52.6
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 3.0e-06 56.2 70 47.1
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 3.0e-06 56.2 52 51.9
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 3.0e-06 56.2 70 44.3
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 4.0e-06 55.8 64 46.9
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 5.2e-06 55.5 69 52.2
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 6.8e-06 55.1 70 47.1
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 6.8e-06 55.1 41 70.7
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 6.8e-06 55.1 72 48.6
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 8.8e-06 54.7 68 47.1
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 8.8e-06 54.7 104 34.6
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 8.8e-06 54.7 58 48.3


User provided reference genes

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