Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 1.4e-70 270.8 327 100.0
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 7.6e-69 265.0 327 98.8
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 2.2e-68 263.5 327 98.5
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 2.2e-68 263.5 327 98.5
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 1.4e-67 260.8 336 85.7
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 4.2e-67 259.2 327 97.6
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 9.3e-67 258.1 327 96.6
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.2e-66 257.7 327 97.2
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.1e-66 256.9 327 96.9
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.1e-66 256.9 327 96.6
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.7e-66 256.5 327 97.2
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 3.0e-65 253.1 343 81.6
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 6.7e-65 251.9 326 96.3
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 8.7e-65 251.5 327 96.3
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.1e-64 251.1 326 96.6
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 6.2e-63 245.4 331 94.9
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.5e-61 240.7 327 94.5
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 2.2e-60 236.9 345 78.0
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.0e-60 235.7 327 92.0
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 3.9e-57 226.1 327 90.8
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 1.9e-56 223.8 327 90.8
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.9e-56 223.8 327 88.4
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 4.3e-56 222.6 327 90.2
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-55 220.3 327 89.6
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 3.7e-55 219.5 319 91.2
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.3e-55 218.8 327 89.3
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-54 218.0 321 88.8
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.1e-54 218.0 329 89.7
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.4e-54 216.9 327 88.7
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.1e-54 216.5 327 89.0
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 4.1e-54 216.1 323 87.3
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 6.9e-54 215.3 319 90.9
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.9e-54 215.3 321 88.2
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.2e-53 214.5 315 91.7
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.5e-53 214.2 327 88.7
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 3.4e-53 213.0 321 92.8
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.5e-53 212.6 309 93.5
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 5.9e-53 212.2 320 92.2
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 7.7e-53 211.8 321 90.3
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.0e-52 211.5 319 89.7
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.0e-52 211.5 319 89.0
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.3e-52 211.1 321 92.5
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.3e-52 211.1 321 92.5
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 1.3e-52 211.1 315 87.9
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.2e-52 210.3 321 91.6
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 2.9e-52 209.9 318 91.8
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.9e-52 209.9 319 90.3
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 2.9e-52 209.9 323 90.7
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 3.8e-52 209.5 319 91.2
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 5.0e-52 209.1 320 91.6
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 5.0e-52 209.1 328 89.0
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 6.5e-52 208.8 320 91.6
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 8.5e-52 208.4 321 88.2
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 8.5e-52 208.4 320 90.9
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 8.5e-52 208.4 319 89.7
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.1e-51 208.0 316 91.5
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.1e-51 208.0 324 90.1
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.1e-51 208.0 324 87.7
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.4e-51 207.6 312 91.7
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.9e-51 207.2 321 91.0
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.9e-51 207.2 328 89.0
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.5e-51 206.8 326 89.9
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.5e-51 206.8 327 89.3
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.2e-51 206.5 327 89.0
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 3.2e-51 206.5 320 91.2
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 3.2e-51 206.5 321 91.0
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 3.2e-51 206.5 321 88.8
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 4.2e-51 206.1 325 89.5
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 4.2e-51 206.1 309 92.6
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 4.2e-51 206.1 317 90.9
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 5.5e-51 205.7 323 90.4
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.5e-51 205.7 322 91.0
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.5e-51 205.7 322 91.0
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 7.2e-51 205.3 320 90.0
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 7.2e-51 205.3 320 90.0
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 7.2e-51 205.3 321 90.7
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 7.2e-51 205.3 320 90.6
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 9.4e-51 204.9 322 91.3
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 9.4e-51 204.9 322 91.3
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 9.4e-51 204.9 317 90.9
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 3.6e-50 203.0 317 83.6
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 3.6e-50 203.0 325 80.3
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 4.6e-50 202.6 321 88.8
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 6.1e-50 202.2 319 90.9
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 6.1e-50 202.2 320 90.9
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 7.9e-50 201.8 321 88.5
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.0e-49 201.4 321 76.3
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.0e-49 201.4 331 87.9
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 1.0e-49 201.4 318 90.6
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 1.4e-49 201.1 321 90.0
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.4e-49 201.1 329 88.1
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.4e-49 201.1 320 87.5
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 2.3e-49 200.3 318 89.9
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 2.3e-49 200.3 321 89.4
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.9e-49 199.5 325 87.7
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 3.9e-49 199.5 316 89.6
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 5.1e-49 199.1 306 92.2
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 1.1e-48 198.0 318 89.0
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.5e-48 197.6 319 89.7
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 3.3e-48 196.4 319 81.8
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 4.3e-48 196.1 321 90.0
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 9.7e-48 194.9 341 61.3
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 2.2e-47 193.7 319 89.0
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 2.2e-47 193.7 241 89.2
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 6.3e-47 192.2 319 89.0
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.1e-46 191.4 241 87.6
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 1.4e-46 191.0 296 92.9
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-46 191.0 329 80.2
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-46 191.0 329 80.2
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 2.4e-46 190.3 238 89.5
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 2.4e-46 190.3 319 88.7
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.1e-46 189.9 348 64.1
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 6.9e-46 188.7 361 65.9
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 9.1e-46 188.3 326 87.7
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 2.0e-45 187.2 296 90.9
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 3.8e-44 183.0 323 86.4
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 5.0e-44 182.6 315 87.6
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 8.5e-44 181.8 326 83.7
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 2.5e-43 180.3 327 53.5
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 3.2e-43 179.9 101 85.1
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.5e-43 179.1 320 84.4
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 7.2e-43 178.7 315 87.6
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.9e-42 175.3 322 83.5
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 7.9e-42 175.3 322 83.5
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 7.9e-42 175.3 340 83.5
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 7.9e-42 175.3 241 68.9
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 6.7e-41 172.2 316 85.1
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 8.8e-41 171.8 316 87.7
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.5e-40 171.0 321 86.9
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.5e-40 171.0 340 75.3
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 2.6e-40 170.2 101 81.2
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 4.4e-40 169.5 320 85.9
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 5.7e-40 169.1 95 87.4
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 5.7e-40 169.1 95 85.3
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 5.7e-40 169.1 95 85.3
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 7.4e-40 168.7 310 73.9
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 9.7e-40 168.3 93 86.0
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 9.7e-40 168.3 93 87.1
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 9.7e-40 168.3 93 87.1
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 9.7e-40 168.3 94 87.2
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 1.3e-39 167.9 319 84.3
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.3e-39 167.9 343 79.6
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.7e-39 167.5 314 71.0
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.2e-39 167.2 101 80.2
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.1e-38 164.9 104 78.8
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.8e-38 164.1 321 82.2
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 4.1e-38 162.9 104 77.9
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 7.0e-38 162.2 318 82.1
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 7.0e-38 162.2 95 82.1
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.0e-37 160.6 221 91.0
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 3.5e-37 159.8 318 83.6
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 5.9e-37 159.1 318 81.4
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.0e-36 158.3 99 77.8
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 9.4e-35 151.8 238 82.4
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.8e-31 140.2 73 89.0
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.4e-30 137.9 241 78.0
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.6e-29 133.7 86 69.8
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 1.1e-27 128.3 303 79.5
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 3.0e-25 120.2 328 74.4
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 6.8e-25 119.0 74 81.1
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.1e-22 109.8 275 79.3
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 6.5e-20 102.4 87 60.9
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.5e-19 99.4 65 73.8
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.0e-17 95.1 50 82.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.8e-17 94.4 64 64.1
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 6.8e-17 92.4 88 51.1
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 1.5e-16 91.3 100 56.0
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.3e-15 88.2 100 54.0
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 7.0e-14 82.4 117 87.2
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 5.9e-13 79.3 50 74.0
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 7.7e-13 79.0 75 53.3
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.3e-12 78.2 48 81.2
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.9e-12 77.0 178 88.8
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 1.1e-11 75.1 45 84.4
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 9.5e-11 72.0 240 68.8
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 2.8e-10 70.5 117 47.9
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 3.0e-09 67.0 40 77.5
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.6e-08 63.9 40 77.5
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 2.2e-07 60.8 40 75.0
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 2.2e-07 60.8 40 72.5


User provided reference genes

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