Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 4.4e-22 107.1 54 100.0
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 4.4e-22 107.1 54 100.0
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 4.4e-22 107.1 54 100.0
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 4.4e-22 107.1 54 100.0
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 4.4e-22 107.1 54 100.0
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 4.4e-22 107.1 54 100.0
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 4.4e-22 107.1 54 100.0
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 4.4e-22 107.1 54 100.0
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 4.4e-22 107.1 54 100.0
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 4.4e-22 107.1 54 100.0
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 4.4e-22 107.1 54 100.0
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 4.4e-22 107.1 54 100.0
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 2.2e-21 104.8 54 98.1
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 1.4e-20 102.1 54 94.4
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 2.4e-20 101.3 54 96.3
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 3.1e-20 100.9 50 100.0
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 7.0e-20 99.8 53 90.6
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 7.0e-20 99.8 53 90.6
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 2.7e-19 97.8 54 87.0
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 4.5e-19 97.1 54 87.0
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 4.5e-19 97.1 54 87.0
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 4.5e-19 97.1 54 87.0
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 7.7e-19 96.3 54 87.0
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 7.7e-19 96.3 54 87.0
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 7.7e-19 96.3 54 87.0
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 7.7e-19 96.3 54 87.0
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 7.7e-19 96.3 54 87.0
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 7.7e-19 96.3 54 87.0
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 7.7e-19 96.3 54 87.0
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 1.3e-18 95.5 54 85.2
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 2.3e-18 94.7 54 85.2
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 83.3
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.9e-18 94.4 54 87.0
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 5.0e-18 93.6 51 88.2
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 5.0e-18 93.6 54 85.2
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 1.5e-17 92.0 54 83.3
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 4.2e-17 90.5 55 83.6
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.2e-17 90.5 54 83.3
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 5.5e-17 90.1 54 81.5
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.5e-17 90.1 54 83.3
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 1.2e-16 89.0 54 79.6
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.6e-16 88.6 54 81.5
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 2.8e-16 87.8 54 79.6
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 3.6e-16 87.4 54 77.8
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 3.6e-16 87.4 54 79.6
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 4.7e-16 87.0 51 80.4
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 4.7e-16 87.0 50 84.0
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 1.4e-15 85.5 54 79.6
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.0e-15 84.3 51 78.4
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 8.9e-15 82.8 49 81.6
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.2e-14 82.4 54 77.8
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 2.6e-14 81.3 44 88.6
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.4e-14 80.9 54 75.9
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 5.7e-14 80.1 44 86.4
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 7.5e-14 79.7 50 76.0
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 2.8e-13 77.8 49 71.4
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.8e-13 77.8 44 84.1
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 2.8e-13 77.8 44 84.1
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 6.3e-13 76.6 50 70.0
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.1e-12 75.9 44 81.8
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 4.5e-11 70.5 43 79.1
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 5.9e-11 70.1 43 79.1
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 5.9e-11 70.1 43 79.1
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 5.9e-11 70.1 43 79.1
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 7.8e-11 69.7 42 81.0
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.0e-10 69.3 52 67.3
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 5.0e-10 67.0 42 76.2
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 1.5e-09 65.5 42 76.2
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 3.3e-09 64.3 38 78.9
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 6.1e-08 60.1 41 70.7
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 6.1e-08 60.1 54 57.4
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 6.1e-08 60.1 54 57.4
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 6.1e-08 60.1 54 57.4
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 1.2e-06 55.8 31 83.9


User provided reference genes

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