Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p45520 Brassica napus HOM05D003638 ORTHO05D003202 3.3e-56 221.5 110 100.0
BraA03t13684Z Brassica rapa HOM05D003638 ORTHO05D003202 3.3e-56 221.5 110 100.0
C03p56460 Brassica napus HOM05D003638 ORTHO05D003202 2.6e-53 211.8 110 96.4
BolC3t17933H Brassica oleracea HOM05D003638 ORTHO05D003202 2.6e-53 211.8 110 96.4
A03p45490 Brassica napus HOM05D003638 ORTHO05D003202 2.8e-52 208.4 110 95.5
BraA03t13679Z Brassica rapa HOM05D003638 ORTHO05D003202 2.8e-52 208.4 110 95.5
BcaB08g34596 Brassica carinata HOM05D003638 ORTHO05D003202 1.7e-49 199.1 112 91.1
BcaC01g03063 Brassica carinata HOM05D011508 ORTHO05D017548 4.3e-48 194.5 98 98.0
A07p05140 Brassica napus HOM05D003638 ORTHO05D003202 3.7e-44 181.4 100 92.0
C07p08290 Brassica napus HOM05D003638 ORTHO05D003202 3.7e-44 181.4 100 92.0
BolC7t41242H Brassica oleracea HOM05D003638 ORTHO05D003202 3.7e-44 181.4 100 92.0
BraA07t28311Z Brassica rapa HOM05D003638 ORTHO05D003202 3.7e-44 181.4 100 92.0
BcaC06g36068 Brassica carinata HOM05D003638 ORTHO05D003202 4.9e-44 181.0 100 92.0
BcaB03g16305 Brassica carinata HOM05D003638 ORTHO05D003202 3.5e-42 174.9 100 89.0
BcaB03g16307 Brassica carinata HOM05D003638 ORTHO05D003202 3.5e-42 174.9 100 89.0
Sp3g28870 Schrenkiella parvula HOM05D003638 ORTHO05D003202 4.6e-42 174.5 100 89.0
Thhalv10022864m.g Eutrema salsugineum HOM05D003638 ORTHO05D003202 2.1e-39 165.6 101 85.1
CARHR105850 Cardamine hirsuta HOM05D003638 ORTHO05D003202 2.8e-39 165.2 100 84.0
BcaC01g03061 Brassica carinata HOM05D003638 ORTHO05D003202 1.1e-38 163.3 89 89.9
C03p56510 Brassica napus HOM05D003638 ORTHO05D003202 1.1e-38 163.3 89 89.9
BolC3t17937H Brassica oleracea HOM05D003638 ORTHO05D003202 1.1e-38 163.3 89 89.9
AT2G15580 Arabidopsis thaliana HOM05D003638 ORTHO05D003202 1.5e-37 159.5 99 81.8
AL3G47340 Arabidopsis lyrata HOM05D003638 ORTHO05D003202 4.4e-37 157.9 100 82.0
Carub.0003s2935 Capsella rubella HOM05D003638 ORTHO05D003202 3.2e-35 151.8 100 77.0
Aa31LG8G12110 Aethionema arabicum HOM05D003638 ORTHO05D003202 3.3e-32 141.7 111 70.3
THA.LOC104808922 Tarenaya hassleriana HOM05D003638 ORTHO05D003202 1.2e-21 106.7 99 58.6
CSS0017335 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 6.6e-17 90.9 99 54.5
ClCG02G017240 Citrullus lanatus HOM05D003638 ORTHO05D003202 1.9e-16 89.4 106 53.8
Duzib168G1473 Durio zibethinus HOM05D003638 ORTHO05D003202 1.6e-15 86.3 99 51.5
Manes.06G041300 Manihot esculenta HOM05D003638 ORTHO05D003202 1.6e-15 86.3 101 50.5
Thecc.09G141300 Theobroma cacao HOM05D003638 ORTHO05D003202 1.6e-15 86.3 99 50.5
Cpa.g.sc46.85 Carica papaya HOM05D003638 ORTHO05D003202 2.1e-15 85.9 111 50.5
MELO3C004441.2 Cucumis melo HOM05D003638 ORTHO05D003202 2.8e-15 85.5 97 53.6
Potri.006G190300 Populus trichocarpa HOM05D003638 ORTHO05D003202 4.7e-15 84.7 107 46.7
GSVIVG01012890001 Vitis vinifera HOM05D003638 ORTHO05D003202 4.7e-15 84.7 100 54.0
Gohir.D13G208400 Gossypium hirsutum HOM05D003638 ORTHO05D003202 6.2e-15 84.3 98 55.1
Gohir.A13G203100 Gossypium hirsutum HOM05D003638 ORTHO05D003202 8.1e-15 84.0 98 55.1
TAR626G0601 Trochodendron aralioides HOM05D003638 ORTHO05D003202 1.4e-14 83.2 97 53.6
CsaV3_2G003550 Cucumis sativus L. HOM05D003638 ORTHO05D003202 3.1e-14 82.0 100 52.0
Potri.018G114500 Populus trichocarpa HOM05D003638 ORTHO05D003202 4.0e-14 81.6 104 46.2
Solyc07g007160.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 5.2e-14 81.3 94 54.3
PGSC0003DMG401030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 5.2e-14 81.3 94 54.3
Sabra18G0097400 Salix brachista HOM05D003638 ORTHO05D003202 6.9e-14 80.9 103 46.6
CiPaw.15G182800 Carya illinoinensis HOM05D003638 ORTHO05D003202 1.2e-13 80.1 99 52.5
Sopen07g003210 Solanum pennellii HOM05D003638 ORTHO05D003202 1.2e-13 80.1 94 53.2
Gorai.013G237500 Gossypium raimondii HOM05D003638 ORTHO05D003202 1.5e-13 79.7 99 52.5
TAR383G0618 Trochodendron aralioides HOM05D003638 ORTHO05D003202 1.5e-13 79.7 97 51.5
Sed0014564 Sechium edule HOM05D003638 ORTHO05D003202 2.0e-13 79.3 97 53.6
TWI63G0270 Tripterygium wilfordii HOM05D003638 ORTHO05D003202 3.4e-13 78.6 97 48.5
Cfa020896 Carpinus fangiana HOM05D003638 ORTHO05D003202 5.8e-13 77.8 97 49.5
Gohir.A08G095362 Gossypium hirsutum HOM05D003638 ORTHO05D003202 7.6e-13 77.4 99 47.5
Lalb_Chr23g0275841 Lupinus albus HOM05D003638 ORTHO05D003202 7.6e-13 77.4 95 51.6
CANSAT11G2120 Cannabis sativa HOM05D003638 ORTHO05D003202 1.7e-12 76.3 99 49.5
Duzib150G0024 Durio zibethinus HOM05D003638 ORTHO05D003202 1.7e-12 76.3 97 51.5
Hma1.2p1_0182F.1_g080450 Hydrangea macrophylla HOM05D003638 ORTHO05D003202 2.2e-12 75.9 93 50.5
Duzib187G0526 Durio zibethinus HOM05D003638 ORTHO05D003202 2.9e-12 75.5 99 50.5
QL02p091197 Quercus lobata HOM05D003638 ORTHO05D003202 3.8e-12 75.1 99 49.5
Nitab4.5_0001555g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 6.4e-12 74.3 94 48.9
Lalb_Chr08g0233781 Lupinus albus HOM05D003638 ORTHO05D003202 8.4e-12 73.9 104 44.2
Nitab4.5_0001751g0040 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.4e-11 73.2 92 47.8
CiPaw.16G118000 Carya illinoinensis HOM05D003638 ORTHO05D003202 1.9e-11 72.8 99 48.5
arahy.Tifrunner.gnm1.ann1.ZD4V4J Arachis hypogaea HOM05D003638 ORTHO05D003202 2.4e-11 72.4 99 42.4
Haze_19323 Corylus avellana HOM05D003638 ORTHO05D003202 2.4e-11 72.4 90 50.0
Glyma.09G096300 Glycine max HOM05D003638 ORTHO05D003202 2.4e-11 72.4 96 46.9
Ciclev10009499m.g Citrus clementina HOM05D003638 ORTHO05D003202 4.2e-11 71.6 99 45.5
Lalb_Chr08g0233671 Lupinus albus HOM05D003638 ORTHO05D003202 4.2e-11 71.6 101 43.6
Dinv41427 Davidia involucrata HOM05D003638 ORTHO05D003202 5.4e-11 71.2 97 49.5
MD02G1013200 Malus domestica HOM05D003638 ORTHO05D003202 5.4e-11 71.2 99 47.5
Phvul.009G209800 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 7.1e-11 70.9 96 47.9
Aqoxy7G03537 Aquilegia oxysepala HOM05D003638 ORTHO05D003202 9.3e-11 70.5 99 50.5
Oeu055917.1 Olea europaea HOM05D003638 ORTHO05D003202 9.3e-11 70.5 94 47.9
PSO170G3167 Papaver somniferum HOM05D003638 ORTHO05D003202 9.3e-11 70.5 101 43.6
Cfa020895 Carpinus fangiana HOM05D003638 ORTHO05D003202 1.2e-10 70.1 100 42.0
Dinv22136 Davidia involucrata HOM05D003638 ORTHO05D003202 1.2e-10 70.1 95 48.4
Dinv42915 Davidia involucrata HOM05D003638 ORTHO05D003202 1.2e-10 70.1 95 48.4
Dinv43185 Davidia involucrata HOM05D003638 ORTHO05D003202 1.2e-10 70.1 95 48.4
Gohir.A06G050200 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.6e-10 69.7 98 46.9
Oeu051707.1 Olea europaea HOM05D003638 ORTHO05D003202 1.6e-10 69.7 94 46.8
RcHm_v2.0_Chr2g0086711 Rosa chinensis HOM05D003638 ORTHO05D003202 1.6e-10 69.7 99 48.5
VMungo1309G1330 Vigna mungo HOM05D003638 ORTHO05D003202 1.6e-10 69.7 96 46.9
arahy.Tifrunner.gnm1.ann1.8W4I3Q Arachis hypogaea HOM05D003638 ORTHO05D003202 2.7e-10 68.9 98 42.9
Medtr2g461020 Medicago truncatula HOM05D003638 ORTHO05D003202 2.7e-10 68.9 101 45.5
Cc06_g07440 Coffea canephora HOM05D003638 ORTHO05D003202 3.5e-10 68.6 93 47.3
vmacro21884 Vaccinium macrocarpon HOM05D003638 ORTHO05D003202 3.5e-10 68.6 101 48.5
Actinidia21912 Actinidia chinensis HOM05D003638 ORTHO05D003202 4.6e-10 68.2 93 46.2
CiPaw.15G182700 Carya illinoinensis HOM05D003638 ORTHO05D003202 4.6e-10 68.2 95 49.5
QL02p091214 Quercus lobata HOM05D003638 ORTHO05D003202 4.6e-10 68.2 103 47.6
MBI15_g25866_MAGBIO Magnolia biondii HOM05D003638 ORTHO05D003202 6.0e-10 67.8 98 45.9
Manes.14G138300 Manihot esculenta HOM05D003638 ORTHO05D003202 6.0e-10 67.8 98 44.9
Nitab4.5_0005330g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 6.0e-10 67.8 92 47.8
Psat1g023080 Pisum sativum HOM05D003638 ORTHO05D003202 6.0e-10 67.8 96 45.8
Rhsim01G0052400 Rhododendron simsii HOM05D003638 ORTHO05D003202 6.0e-10 67.8 94 48.9
TPR.G25664 Trifolium pratense HOM05D003638 ORTHO05D003202 6.0e-10 67.8 98 42.9
Glyma.15G201800 Glycine max HOM05D003638 ORTHO05D003202 7.8e-10 67.4 96 45.8
Glyma.17G105300 Glycine max HOM05D003638 ORTHO05D003202 7.8e-10 67.4 90 46.7
Sc14g0000080 Simmondsia chinensis HOM05D003638 ORTHO05D003202 7.8e-10 67.4 102 45.1
Actinidia04244 Actinidia chinensis HOM05D003638 ORTHO05D003202 1.0e-09 67.0 98 45.9
ClCG06G012030 Citrullus lanatus HOM05D003638 ORTHO05D003202 1.0e-09 67.0 102 44.1
PSO017G4113 Papaver somniferum HOM05D003638 ORTHO05D003202 1.3e-09 66.6 101 41.6
PGSC0003DMG402030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 1.3e-09 66.6 94 47.9
DCAR_014923 Daucus carota HOM05D003638 ORTHO05D003202 1.7e-09 66.2 100 44.0
Peaxi162Scf00108g00110 Petunia axillaris HOM05D003638 ORTHO05D003202 1.7e-09 66.2 93 47.3
FvH4_1g01750 Fragaria vesca HOM05D003638 ORTHO05D003202 2.3e-09 65.9 100 45.0
FAN19G2555 Fragaria x ananassa HOM05D003638 ORTHO05D003202 2.3e-09 65.9 100 45.0
FAN28G0590 Fragaria x ananassa HOM05D003638 ORTHO05D003202 2.3e-09 65.9 100 45.0
Nitab4.5_0001021g0080 Nicotiana tabacum HOM05D003638 ORTHO05D003202 2.3e-09 65.9 89 47.2
PGR102G3190 Punica granatum HOM05D003638 ORTHO05D003202 2.3e-09 65.9 98 44.9
Lj6g0008260 Lotus japonicus HOM05D003638 ORTHO05D003202 3.0e-09 65.5 96 46.9
FAN23G0723 Fragaria x ananassa HOM05D003638 ORTHO05D003202 3.9e-09 65.1 100 45.0
FAN26G1151 Fragaria x ananassa HOM05D003638 ORTHO05D003202 3.9e-09 65.1 100 45.0
Sopen06g024020 Solanum pennellii HOM05D003638 ORTHO05D003202 3.9e-09 65.1 94 45.7
Haze_19322 Corylus avellana HOM05D003638 ORTHO05D003202 6.6e-09 64.3 97 43.3
Nitab4.5_0001021g0070 Nicotiana tabacum HOM05D003638 ORTHO05D003202 6.6e-09 64.3 94 45.7
Solyc07g007170.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 6.6e-09 64.3 94 45.7
Sopen07g003220 Solanum pennellii HOM05D003638 ORTHO05D003202 6.6e-09 64.3 94 45.7
Gorai.010G056400 Gossypium raimondii HOM05D003638 ORTHO05D003202 8.7e-09 63.9 99 43.4
MD15G1160000 Malus domestica HOM05D003638 ORTHO05D003202 8.7e-09 63.9 100 47.0
Lsat_1_v5_gn_8_63100 Lactuca sativa HOM05D003638 ORTHO05D003202 1.1e-08 63.5 93 47.3
Nn2g12242 Nelumbo nucifera HOM05D003638 ORTHO05D003202 1.1e-08 63.5 87 43.7
CSS0018942 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 1.9e-08 62.8 96 42.7
Nitab4.5_0007535g0020 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.9e-08 62.8 92 44.6
arahy.Tifrunner.gnm1.ann1.S7JRIG Arachis hypogaea HOM05D003638 ORTHO05D003202 2.5e-08 62.4 104 44.2
EL10Ac8g18824 Beta vulgaris HOM05D003638 ORTHO05D003202 2.5e-08 62.4 93 47.3
MELO3C010264.2 Cucumis melo HOM05D003638 ORTHO05D003202 2.5e-08 62.4 103 43.7
arahy.Tifrunner.gnm1.ann1.V8YXJU Arachis hypogaea HOM05D003638 ORTHO05D003202 3.3e-08 62.0 104 44.2
arahy.Tifrunner.gnm1.ann1.Y03F6U Arachis hypogaea HOM05D003638 ORTHO05D003202 3.3e-08 62.0 103 43.7
Peaxi162Scf00391g00019 Petunia axillaris HOM05D003638 ORTHO05D003202 3.3e-08 62.0 94 44.7
Duzib187G0899 Durio zibethinus HOM05D003638 ORTHO05D003202 4.3e-08 61.6 96 41.7
CSS0003684 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 5.6e-08 61.2 96 42.7
Migut.K00380 Erythranthe guttata HOM05D003638 ORTHO05D003202 7.3e-08 60.8 96 46.9
Eucgr.C04088 Eucalyptus grandis HOM05D003638 ORTHO05D003202 7.3e-08 60.8 94 45.7
MSTRG.26319 Avicennia marina HOM05D003638 ORTHO05D003202 9.6e-08 60.5 100 43.0
arahy.Tifrunner.gnm1.ann1.80FEVW Arachis hypogaea HOM05D003638 ORTHO05D003202 1.3e-07 60.1 104 41.3
Ah.14g078720 Amaranthus hybridus HOM05D003638 ORTHO05D003202 1.6e-07 59.7 101 42.6
ECA236G1572 Erigeron canadensis HOM05D003638 ORTHO05D003202 1.6e-07 59.7 95 44.2
SGA_v2.0_scaffold278G46736 Striga asiatica HOM05D003638 ORTHO05D003202 1.6e-07 59.7 102 42.2
Manes.14G138400 Manihot esculenta HOM05D003638 ORTHO05D003202 2.8e-07 58.9 96 42.7
COL.COLO4_24107 Corchorus olitorius HOM05D003638 ORTHO05D003202 3.6e-07 58.5 62 50.0
Nn8g39712 Nelumbo nucifera HOM05D003638 ORTHO05D003202 3.6e-07 58.5 96 41.7
Sed0026668 Sechium edule HOM05D003638 ORTHO05D003202 3.6e-07 58.5 99 41.4
SEGI_35833 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 3.6e-07 58.5 98 42.9
SEGI_39004 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 3.6e-07 58.5 98 42.9
CsaV3_1G028490 Cucumis sativus L. HOM05D003638 ORTHO05D003202 4.8e-07 58.2 99 43.4
HanXRQChr05g0137981 Helianthus annuus HOM05D003638 ORTHO05D003202 1.4e-06 56.6 93 45.2
MSTRG.26318 Avicennia marina HOM05D003638 ORTHO05D003202 1.8e-06 56.2 101 40.6
Phvul.003G174500 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 2.4e-06 55.8 92 44.6
Os02g0798200 Oryza sativa ssp. japonica HOM05D003638 ORTHO05D003202 4.0e-06 55.1 100 40.0
Hund09319 Selenicereus undatus HOM05D003638 ORTHO05D003202 5.3e-06 54.7 104 39.4
HanXRQChr05g0137971 Helianthus annuus HOM05D003638 ORTHO05D003202 6.9e-06 54.3 93 41.9


User provided reference genes

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